HEADER OXIDOREDUCTASE 23-APR-02 1GYC TITLE CRYSTAL STRUCTURE DETERMINATION AT ROOM TEMPERATURE OF A LACCASE FROM TITLE 2 TRAMETES VERSICOLOR IN ITS OXIDISED FORM CONTAINING A FULL COMPLEMENT TITLE 3 OF COPPER IONS COMPND MOL_ID: 1; COMPND 2 MOLECULE: LACCASE 2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BENZENEDIOL\:OXYGEN OXIDOREDUCTASE, URISHIOL OXIDASE, COMPND 5 DIPHENOL OXIDASE, LACCASE I; COMPND 6 EC: 1.10.3.2 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRAMETES VERSICOLOR; SOURCE 3 ORGANISM_COMMON: WHITE-ROT FUNGUS; SOURCE 4 ORGANISM_TAXID: 5325; SOURCE 5 ATCC: 20869 KEYWDS LACCASE, OXIDOREDUCTASE, DIPHENOL OXIDASE, LIGNIN DEGRADATION EXPDTA X-RAY DIFFRACTION AUTHOR T.CHOINOWSKI,M.ANTORINI,K.PIONTEK REVDAT 7 13-DEC-23 1GYC 1 HETSYN REVDAT 6 29-JUL-20 1GYC 1 COMPND REMARK HETNAM LINK REVDAT 6 2 1 SITE ATOM REVDAT 5 24-JUL-19 1GYC 1 REMARK REVDAT 4 07-SEP-11 1GYC 1 REMARK HETSYN FORMUL SITE REVDAT 3 24-FEB-09 1GYC 1 VERSN REVDAT 2 20-DEC-06 1GYC 1 JRNL REVDAT 1 22-AUG-02 1GYC 0 JRNL AUTH K.PIONTEK,M.ANTORINI,T.CHOINOWSKI JRNL TITL CRYSTAL STRUCTURE OF A LACCASE FROM THE FUNGUS TRAMETES JRNL TITL 2 VERSICOLOR AT 1.90-A RESOLUTION CONTAINING A FULL COMPLEMENT JRNL TITL 3 OF COPPERS. JRNL REF J.BIOL.CHEM. V. 277 37663 2002 JRNL REFN ISSN 0021-9258 JRNL PMID 12163489 JRNL DOI 10.1074/JBC.M204571200 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.ANTORINI,I.HERPOEL-GIMBERTCHOINOWSKI,J.SIGOILLOT-C, REMARK 1 AUTH 2 M.ASTHER,K.WINTERHALTER REMARK 1 TITL PURIFICCATION, CRYSTALLISATION AND X-RAY DIFFRACTION STUDY REMARK 1 TITL 2 OF FULLY FUNCTIONAL LACCASES FROM TWO LIGNINOLYTIC FUNGI REMARK 1 REF BIOCHIM.BIOPHYS.ACTA V.1594 109 2002 REMARK 1 REFN ISSN 0006-3002 REMARK 1 PMID 11825613 REMARK 1 DOI 10.1016/S0167-4838(01)00289-8 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 17.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 51746 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2632 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3802 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 138 REMARK 3 SOLVENT ATOMS : 590 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NONE REMARK 4 REMARK 4 1GYC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-APR-02. REMARK 100 THE DEPOSITION ID IS D_1290009722. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-APR-99 REMARK 200 TEMPERATURE (KELVIN) : 287.0 REMARK 200 PH : 5.60 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : BW7B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.847 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52154 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1A65 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% (W/V) PEG8000, 20% (V/V) REMARK 280 ISOPROPANOL, 100 MM SODIUM CITRATE PH 5.6, PH 5.60 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 41.84050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.90500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.48850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 45.90500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 41.84050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.48850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1709 O HOH A 2074 2555 1.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 96 CB - CG - OD2 ANGL. DEV. = 6.9 DEGREES REMARK 500 TYR A 116 CA - CB - CG ANGL. DEV. = 13.8 DEGREES REMARK 500 ARG A 195 CD - NE - CZ ANGL. DEV. = 13.2 DEGREES REMARK 500 ARG A 195 NE - CZ - NH1 ANGL. DEV. = 4.9 DEGREES REMARK 500 ARG A 195 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ASP A 224 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 HIS A 400 CE1 - NE2 - CD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP A 444 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 58 128.88 74.26 REMARK 500 PHE A 106 -166.88 -126.23 REMARK 500 SER A 113 -134.63 44.93 REMARK 500 LEU A 164 34.05 -95.49 REMARK 500 ASP A 206 -71.26 -158.44 REMARK 500 ALA A 241 -7.42 78.37 REMARK 500 ASN A 418 -76.92 -94.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 LEU A 300 10.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2186 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH A2187 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH A2188 DISTANCE = 6.00 ANGSTROMS REMARK 525 HOH A2189 DISTANCE = 6.15 ANGSTROMS REMARK 525 HOH A2190 DISTANCE = 6.35 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A1502 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 64 NE2 REMARK 620 2 HIS A 398 NE2 174.3 REMARK 620 3 HOH A1892 O 90.1 94.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A1500 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 66 ND1 REMARK 620 2 HIS A 109 NE2 125.4 REMARK 620 3 HIS A 454 NE2 107.1 111.5 REMARK 620 4 HOH A1632 O 140.9 86.0 76.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A1501 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 111 NE2 REMARK 620 2 HIS A 400 NE2 102.0 REMARK 620 3 HIS A 452 NE2 106.0 101.3 REMARK 620 4 HOH A1632 O 96.9 142.3 104.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A1503 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 395 ND1 REMARK 620 2 CYS A 453 SG 126.2 REMARK 620 3 HIS A 458 ND1 104.4 129.0 REMARK 620 N 1 2 REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 999 REMARK 999 SEQUENCE REMARK 999 SWISS-PROT ENTRY Q12178 HAS THE CLOSEST AGREEMENT WITH REMARK 999 THE SEQUENCE OF THE CRYSTALLIZED STRUCTURE. HOWEVER, THE REMARK 999 SEQUENCE OF THE STRUCTURE DIFFERS FROM THE SWISS-PROT ENTRY REMARK 999 IS SEVERAL PLACES, AND THESE VARIATIONS ARE NOT LISTED IN REMARK 999 ENTRY Q12178: V5A, V31F, V259I, T343S, D460E DBREF 1GYC A 1 499 UNP Q12718 LAC2_TRAVE 21 519 SEQADV 1GYC ALA A 5 UNP Q12718 VAL 25 SEE REMARK 999 SEQADV 1GYC PHE A 31 UNP Q12718 VAL 51 SEE REMARK 999 SEQADV 1GYC VAL A 49 UNP Q12718 ASP 69 VARIANT SEQADV 1GYC THR A 56 UNP Q12718 SER 76 SEE REMARK 999 SEQADV 1GYC ILE A 259 UNP Q12718 VAL 279 SEE REMARK 999 SEQADV 1GYC SER A 343 UNP Q12718 THR 363 SEE REMARK 999 SEQADV 1GYC GLU A 460 UNP Q12718 ASP 480 SEE REMARK 999 SEQRES 1 A 499 ALA ILE GLY PRO ALA ALA SER LEU VAL VAL ALA ASN ALA SEQRES 2 A 499 PRO VAL SER PRO ASP GLY PHE LEU ARG ASP ALA ILE VAL SEQRES 3 A 499 VAL ASN GLY VAL PHE PRO SER PRO LEU ILE THR GLY LYS SEQRES 4 A 499 LYS GLY ASP ARG PHE GLN LEU ASN VAL VAL ASP THR LEU SEQRES 5 A 499 THR ASN HIS THR MET LEU LYS SER THR SER ILE HIS TRP SEQRES 6 A 499 HIS GLY PHE PHE GLN ALA GLY THR ASN TRP ALA ASP GLY SEQRES 7 A 499 PRO ALA PHE VAL ASN GLN CYS PRO ILE ALA SER GLY HIS SEQRES 8 A 499 SER PHE LEU TYR ASP PHE HIS VAL PRO ASP GLN ALA GLY SEQRES 9 A 499 THR PHE TRP TYR HIS SER HIS LEU SER THR GLN TYR CYS SEQRES 10 A 499 ASP GLY LEU ARG GLY PRO PHE VAL VAL TYR ASP PRO LYS SEQRES 11 A 499 ASP PRO HIS ALA SER ARG TYR ASP VAL ASP ASN GLU SER SEQRES 12 A 499 THR VAL ILE THR LEU THR ASP TRP TYR HIS THR ALA ALA SEQRES 13 A 499 ARG LEU GLY PRO ARG PHE PRO LEU GLY ALA ASP ALA THR SEQRES 14 A 499 LEU ILE ASN GLY LEU GLY ARG SER ALA SER THR PRO THR SEQRES 15 A 499 ALA ALA LEU ALA VAL ILE ASN VAL GLN HIS GLY LYS ARG SEQRES 16 A 499 TYR ARG PHE ARG LEU VAL SER ILE SER CYS ASP PRO ASN SEQRES 17 A 499 TYR THR PHE SER ILE ASP GLY HIS ASN LEU THR VAL ILE SEQRES 18 A 499 GLU VAL ASP GLY ILE ASN SER GLN PRO LEU LEU VAL ASP SEQRES 19 A 499 SER ILE GLN ILE PHE ALA ALA GLN ARG TYR SER PHE VAL SEQRES 20 A 499 LEU ASN ALA ASN GLN THR VAL GLY ASN TYR TRP ILE ARG SEQRES 21 A 499 ALA ASN PRO ASN PHE GLY THR VAL GLY PHE ALA GLY GLY SEQRES 22 A 499 ILE ASN SER ALA ILE LEU ARG TYR GLN GLY ALA PRO VAL SEQRES 23 A 499 ALA GLU PRO THR THR THR GLN THR THR SER VAL ILE PRO SEQRES 24 A 499 LEU ILE GLU THR ASN LEU HIS PRO LEU ALA ARG MET PRO SEQRES 25 A 499 VAL PRO GLY SER PRO THR PRO GLY GLY VAL ASP LYS ALA SEQRES 26 A 499 LEU ASN LEU ALA PHE ASN PHE ASN GLY THR ASN PHE PHE SEQRES 27 A 499 ILE ASN ASN ALA SER PHE THR PRO PRO THR VAL PRO VAL SEQRES 28 A 499 LEU LEU GLN ILE LEU SER GLY ALA GLN THR ALA GLN ASP SEQRES 29 A 499 LEU LEU PRO ALA GLY SER VAL TYR PRO LEU PRO ALA HIS SEQRES 30 A 499 SER THR ILE GLU ILE THR LEU PRO ALA THR ALA LEU ALA SEQRES 31 A 499 PRO GLY ALA PRO HIS PRO PHE HIS LEU HIS GLY HIS ALA SEQRES 32 A 499 PHE ALA VAL VAL ARG SER ALA GLY SER THR THR TYR ASN SEQRES 33 A 499 TYR ASN ASP PRO ILE PHE ARG ASP VAL VAL SER THR GLY SEQRES 34 A 499 THR PRO ALA ALA GLY ASP ASN VAL THR ILE ARG PHE GLN SEQRES 35 A 499 THR ASP ASN PRO GLY PRO TRP PHE LEU HIS CYS HIS ILE SEQRES 36 A 499 ASP PHE HIS LEU GLU ALA GLY PHE ALA ILE VAL PHE ALA SEQRES 37 A 499 GLU ASP VAL ALA ASP VAL LYS ALA ALA ASN PRO VAL PRO SEQRES 38 A 499 LYS ALA TRP SER ASP LEU CYS PRO ILE TYR ASP GLY LEU SEQRES 39 A 499 SER GLU ALA ASN GLN MODRES 1GYC ASN A 54 ASN GLYCOSYLATION SITE MODRES 1GYC ASN A 217 ASN GLYCOSYLATION SITE MODRES 1GYC ASN A 251 ASN GLYCOSYLATION SITE MODRES 1GYC ASN A 333 ASN GLYCOSYLATION SITE MODRES 1GYC ASN A 341 ASN GLYCOSYLATION SITE MODRES 1GYC ASN A 436 ASN GLYCOSYLATION SITE HET NAG B 1 14 HET NAG B 2 14 HET NAG C 1 14 HET NAG C 2 14 HET NAG D 1 14 HET NAG D 2 14 HET CU A1500 1 HET CU A1501 1 HET CU A1502 1 HET CU A1503 1 HET NAG A1508 14 HET NAG A1509 14 HET NAG A1512 14 HET IPA A1513 4 HET IPA A1514 4 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM CU COPPER (II) ION HETNAM IPA ISOPROPYL ALCOHOL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN IPA 2-PROPANOL FORMUL 2 NAG 9(C8 H15 N O6) FORMUL 5 CU 4(CU 2+) FORMUL 12 IPA 2(C3 H8 O) FORMUL 14 HOH *590(H2 O) HELIX 1 AA1 ASN A 54 LEU A 58 5 5 HELIX 2 AA2 THR A 73 ASP A 77 5 5 HELIX 3 AA3 THR A 114 GLY A 119 5 6 HELIX 4 AA4 HIS A 133 TYR A 137 5 5 HELIX 5 AA5 ASN A 141 SER A 143 5 3 HELIX 6 AA6 PHE A 270 ILE A 274 5 5 HELIX 7 AA7 ILE A 301 LEU A 305 5 5 HELIX 8 AA8 PRO A 350 SER A 357 1 8 HELIX 9 AA9 THR A 430 GLY A 434 5 5 HELIX 10 AB1 ILE A 455 ALA A 461 1 7 HELIX 11 AB2 ASP A 473 ASN A 478 1 6 HELIX 12 AB3 PRO A 481 GLY A 493 1 13 HELIX 13 AB4 LEU A 494 GLN A 499 5 6 SHEET 1 AA1 4 ARG A 22 VAL A 27 0 SHEET 2 AA1 4 ALA A 5 VAL A 15 -1 N ALA A 11 O VAL A 26 SHEET 3 AA1 4 ARG A 43 ASP A 50 1 O ASN A 47 N LEU A 8 SHEET 4 AA1 4 HIS A 91 HIS A 98 -1 O PHE A 97 N PHE A 44 SHEET 1 AA2 4 ILE A 36 LYS A 39 0 SHEET 2 AA2 4 ARG A 121 TYR A 127 1 O TYR A 127 N GLY A 38 SHEET 3 AA2 4 GLY A 104 SER A 110 -1 N PHE A 106 O PHE A 124 SHEET 4 AA2 4 ILE A 63 HIS A 66 -1 N HIS A 64 O HIS A 109 SHEET 1 AA3 6 ALA A 168 ILE A 171 0 SHEET 2 AA3 6 VAL A 145 TRP A 151 -1 N THR A 149 O LEU A 170 SHEET 3 AA3 6 ARG A 195 SER A 202 1 O VAL A 201 N ILE A 146 SHEET 4 AA3 6 ARG A 243 ASN A 249 -1 O TYR A 244 N LEU A 200 SHEET 5 AA3 6 LEU A 218 VAL A 223 -1 N THR A 219 O VAL A 247 SHEET 6 AA3 6 ILE A 226 VAL A 233 -1 O LEU A 231 N VAL A 220 SHEET 1 AA4 5 VAL A 187 VAL A 190 0 SHEET 2 AA4 5 SER A 276 TYR A 281 1 O ILE A 278 N ILE A 188 SHEET 3 AA4 5 ASN A 256 PRO A 263 -1 N TYR A 257 O LEU A 279 SHEET 4 AA4 5 TYR A 209 ILE A 213 -1 N SER A 212 O ARG A 260 SHEET 5 AA4 5 ILE A 236 ILE A 238 -1 O ILE A 236 N PHE A 211 SHEET 1 AA5 5 LYS A 324 ASN A 327 0 SHEET 2 AA5 5 THR A 379 PRO A 385 1 O GLU A 381 N LEU A 326 SHEET 3 AA5 5 ASN A 436 GLN A 442 -1 O PHE A 441 N ILE A 380 SHEET 4 AA5 5 PHE A 404 ARG A 408 -1 N ALA A 405 O ARG A 440 SHEET 5 AA5 5 PHE A 422 ARG A 423 -1 O ARG A 423 N PHE A 404 SHEET 1 AA6 2 PHE A 330 PHE A 332 0 SHEET 2 AA6 2 PHE A 337 ILE A 339 -1 O PHE A 338 N ASN A 331 SHEET 1 AA7 5 VAL A 371 LEU A 374 0 SHEET 2 AA7 5 ALA A 464 GLU A 469 1 O VAL A 466 N TYR A 372 SHEET 3 AA7 5 GLY A 447 CYS A 453 -1 N TRP A 449 O PHE A 467 SHEET 4 AA7 5 PRO A 396 LEU A 399 -1 N HIS A 398 O HIS A 452 SHEET 5 AA7 5 VAL A 425 SER A 427 -1 O VAL A 426 N PHE A 397 SSBOND 1 CYS A 85 CYS A 488 1555 1555 1.98 SSBOND 2 CYS A 117 CYS A 205 1555 1555 2.04 LINK ND2 ASN A 54 C1 NAG B 1 1555 1555 1.42 LINK ND2 ASN A 217 C1 NAG C 1 1555 1555 1.41 LINK ND2 ASN A 251 C1 NAG A1508 1555 1555 1.40 LINK ND2 ASN A 333 C1 NAG A1509 1555 1555 1.39 LINK ND2 ASN A 341 C1 NAG A1512 1555 1555 1.43 LINK ND2 ASN A 436 C1 NAG D 1 1555 1555 1.42 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.40 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.41 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.41 LINK NE2 HIS A 64 CU CU A1502 1555 1555 2.01 LINK ND1 HIS A 66 CU CU A1500 1555 1555 2.15 LINK NE2 HIS A 109 CU CU A1500 1555 1555 2.12 LINK NE2 HIS A 111 CU CU A1501 1555 1555 2.23 LINK ND1 HIS A 395 CU CU A1503 1555 1555 2.02 LINK NE2 HIS A 398 CU CU A1502 1555 1555 1.97 LINK NE2 HIS A 400 CU CU A1501 1555 1555 2.12 LINK NE2 HIS A 452 CU CU A1501 1555 1555 2.16 LINK SG CYS A 453 CU CU A1503 1555 1555 2.19 LINK NE2 HIS A 454 CU CU A1500 1555 1555 2.17 LINK ND1 HIS A 458 CU CU A1503 1555 1555 2.04 LINK CU CU A1500 O HOH A1632 1555 1555 2.08 LINK CU CU A1501 O HOH A1632 1555 1555 2.19 LINK CU CU A1502 O HOH A1892 1555 1555 2.35 CISPEP 1 GLY A 3 PRO A 4 0 3.35 CISPEP 2 PHE A 31 PRO A 32 0 -2.03 CISPEP 3 LEU A 366 PRO A 367 0 1.43 CISPEP 4 ALA A 393 PRO A 394 0 0.22 CRYST1 83.681 84.977 91.810 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011950 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011768 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010892 0.00000