HEADER TRANSFERASE 21-MAY-02 1GZF TITLE STRUCTURE OF THE CLOSTRIDIUM BOTULINUM C3 EXOENZYME TITLE 2 (WILD-TYPE) IN COMPLEX WITH NAD COMPND MOL_ID: 1; COMPND 2 MOLECULE: MONO-ADP-RIBOSYLTRANSFERASE C3; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: CATALYTIC DOMAIN, RESIDUES 41-251; COMPND 5 SYNONYM: EXOENZYME C3; COMPND 6 EC: 2.4.2.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM BOTULINUM; SOURCE 3 ORGANISM_TAXID: 1491; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSFERASE, ADP-RIBOSYLTRANSFERASE, BACTERIAL TOXIN, C3 KEYWDS 2 EXOENZYME EXPDTA X-RAY DIFFRACTION AUTHOR J.MENETREY,G.FLATAU,E.A.STURA,J.B.CHARBONNIER,F.GAS, AUTHOR 2 J.M.TEULON,M.H.LE DU,P.BOQUET,A.MENEZ REVDAT 2 24-FEB-09 1GZF 1 VERSN REVDAT 1 29-AUG-02 1GZF 0 JRNL AUTH J.MENETREY,G.FLATAU,E.A.STURA,J.B.CHARBONNIER, JRNL AUTH 2 F.GAS,J.M.TEULON,M.H.LE DU,P.BOQUET,A.MENEZ JRNL TITL NAD BINDING INDUCES CONFORMATIONAL CHANGES IN RHO JRNL TITL 2 ADP-RIBOSYLATING CLOSTRIDIUM BOTULINUM C3 JRNL TITL 3 EXOENZYME JRNL REF J.BIOL.CHEM. V. 277 30950 2002 JRNL REFN ISSN 0021-9258 JRNL PMID 12029083 JRNL DOI 10.1074/JBC.M201844200 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.0 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 62950 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.234 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.1 REMARK 3 FREE R VALUE TEST SET COUNT : 3195 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6486 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 169 REMARK 3 SOLVENT ATOMS : 570 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.2 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.027 REMARK 3 BOND ANGLES (DEGREES) : 1.8 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 PARAMETER FILE 2 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: DISORDERED N- AND C-TERMINII WERE REMARK 3 NOT MODELED REMARK 4 REMARK 4 1GZF COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-MAY-02. REMARK 100 THE PDBE ID CODE IS EBI-9210. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAR-01 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 3.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM30A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.009 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62950 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 200 DATA REDUNDANCY : 2.500 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.5 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22.5 % PEG 3350 W/W, 100MM LI2SO4, REMARK 280 80 MM ACID CITRIC PH 3 ADDED WITH 20MM NAD FOR 60MN REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 51.97350 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.09550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 51.97350 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 37.09550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 41 REMARK 465 TYR A 42 REMARK 465 SER A 43 REMARK 465 ASN A 44 REMARK 465 ILE A 248 REMARK 465 ASN A 249 REMARK 465 PRO A 250 REMARK 465 LYS A 251 REMARK 465 ALA C 41 REMARK 465 TYR C 42 REMARK 465 SER C 43 REMARK 465 ALA D 41 REMARK 465 TYR D 42 REMARK 465 SER D 43 REMARK 465 ALA D 247 REMARK 465 ILE D 248 REMARK 465 ASN D 249 REMARK 465 PRO D 250 REMARK 465 LYS D 251 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG B 229 CD ARG B 229 NE -0.153 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 229 CD - NE - CZ ANGL. DEV. = 20.0 DEGREES REMARK 500 ARG B 229 NE - CZ - NH1 ANGL. DEV. = 13.8 DEGREES REMARK 500 ARG B 229 NE - CZ - NH2 ANGL. DEV. = -12.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 213 44.66 38.78 REMARK 500 THR A 246 -154.00 -111.75 REMARK 500 THR B 45 4.91 81.46 REMARK 500 GLN B 182 -33.45 -38.90 REMARK 500 PHE B 183 -1.84 -140.22 REMARK 500 SER C 146 -72.71 -28.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 91 0.29 SIDE CHAIN REMARK 500 ARG A 128 0.10 SIDE CHAIN REMARK 500 ARG B 229 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1249 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B1253 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A1248 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD B1252 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NIR C1252 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP C1253 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP D1247 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1G24 RELATED DB: PDB REMARK 900 THE CRYSTAL STRUCTURE OF EXOENZYME C3 FROM REMARK 900 CLOSTRIDIUMBOTULINUM REMARK 900 RELATED ID: 1GZE RELATED DB: PDB REMARK 900 STRUCTURE OF THE CLOSTRIDIUM BOTULINUM C3 REMARK 900 EXOENZYME (L177C MUTANT) DBREF 1GZF A 41 251 UNP P15879 ARC3_CBDP 41 251 DBREF 1GZF B 41 251 UNP P15879 ARC3_CBDP 41 251 DBREF 1GZF C 41 251 UNP P15879 ARC3_CBDP 41 251 DBREF 1GZF D 41 251 UNP P15879 ARC3_CBDP 41 251 SEQRES 1 A 211 ALA TYR SER ASN THR TYR GLN GLU PHE THR ASN ILE ASP SEQRES 2 A 211 GLN ALA LYS ALA TRP GLY ASN ALA GLN TYR LYS LYS TYR SEQRES 3 A 211 GLY LEU SER LYS SER GLU LYS GLU ALA ILE VAL SER TYR SEQRES 4 A 211 THR LYS SER ALA SER GLU ILE ASN GLY LYS LEU ARG GLN SEQRES 5 A 211 ASN LYS GLY VAL ILE ASN GLY PHE PRO SER ASN LEU ILE SEQRES 6 A 211 LYS GLN VAL GLU LEU LEU ASP LYS SER PHE ASN LYS MET SEQRES 7 A 211 LYS THR PRO GLU ASN ILE MET LEU PHE ARG GLY ASP ASP SEQRES 8 A 211 PRO ALA TYR LEU GLY THR GLU PHE GLN ASN THR LEU LEU SEQRES 9 A 211 ASN SER ASN GLY THR ILE ASN LYS THR ALA PHE GLU LYS SEQRES 10 A 211 ALA LYS ALA LYS PHE LEU ASN LYS ASP ARG LEU GLU TYR SEQRES 11 A 211 GLY TYR ILE SER THR SER LEU MET ASN VAL SER GLN PHE SEQRES 12 A 211 ALA GLY ARG PRO ILE ILE THR LYS PHE LYS VAL ALA LYS SEQRES 13 A 211 GLY SER LYS ALA GLY TYR ILE ASP PRO ILE SER ALA PHE SEQRES 14 A 211 ALA GLY GLN LEU GLU MET LEU LEU PRO ARG HIS SER THR SEQRES 15 A 211 TYR HIS ILE ASP ASP MET ARG LEU SER SER ASP GLY LYS SEQRES 16 A 211 GLN ILE ILE ILE THR ALA THR MET MET GLY THR ALA ILE SEQRES 17 A 211 ASN PRO LYS SEQRES 1 B 211 ALA TYR SER ASN THR TYR GLN GLU PHE THR ASN ILE ASP SEQRES 2 B 211 GLN ALA LYS ALA TRP GLY ASN ALA GLN TYR LYS LYS TYR SEQRES 3 B 211 GLY LEU SER LYS SER GLU LYS GLU ALA ILE VAL SER TYR SEQRES 4 B 211 THR LYS SER ALA SER GLU ILE ASN GLY LYS LEU ARG GLN SEQRES 5 B 211 ASN LYS GLY VAL ILE ASN GLY PHE PRO SER ASN LEU ILE SEQRES 6 B 211 LYS GLN VAL GLU LEU LEU ASP LYS SER PHE ASN LYS MET SEQRES 7 B 211 LYS THR PRO GLU ASN ILE MET LEU PHE ARG GLY ASP ASP SEQRES 8 B 211 PRO ALA TYR LEU GLY THR GLU PHE GLN ASN THR LEU LEU SEQRES 9 B 211 ASN SER ASN GLY THR ILE ASN LYS THR ALA PHE GLU LYS SEQRES 10 B 211 ALA LYS ALA LYS PHE LEU ASN LYS ASP ARG LEU GLU TYR SEQRES 11 B 211 GLY TYR ILE SER THR SER LEU MET ASN VAL SER GLN PHE SEQRES 12 B 211 ALA GLY ARG PRO ILE ILE THR LYS PHE LYS VAL ALA LYS SEQRES 13 B 211 GLY SER LYS ALA GLY TYR ILE ASP PRO ILE SER ALA PHE SEQRES 14 B 211 ALA GLY GLN LEU GLU MET LEU LEU PRO ARG HIS SER THR SEQRES 15 B 211 TYR HIS ILE ASP ASP MET ARG LEU SER SER ASP GLY LYS SEQRES 16 B 211 GLN ILE ILE ILE THR ALA THR MET MET GLY THR ALA ILE SEQRES 17 B 211 ASN PRO LYS SEQRES 1 C 211 ALA TYR SER ASN THR TYR GLN GLU PHE THR ASN ILE ASP SEQRES 2 C 211 GLN ALA LYS ALA TRP GLY ASN ALA GLN TYR LYS LYS TYR SEQRES 3 C 211 GLY LEU SER LYS SER GLU LYS GLU ALA ILE VAL SER TYR SEQRES 4 C 211 THR LYS SER ALA SER GLU ILE ASN GLY LYS LEU ARG GLN SEQRES 5 C 211 ASN LYS GLY VAL ILE ASN GLY PHE PRO SER ASN LEU ILE SEQRES 6 C 211 LYS GLN VAL GLU LEU LEU ASP LYS SER PHE ASN LYS MET SEQRES 7 C 211 LYS THR PRO GLU ASN ILE MET LEU PHE ARG GLY ASP ASP SEQRES 8 C 211 PRO ALA TYR LEU GLY THR GLU PHE GLN ASN THR LEU LEU SEQRES 9 C 211 ASN SER ASN GLY THR ILE ASN LYS THR ALA PHE GLU LYS SEQRES 10 C 211 ALA LYS ALA LYS PHE LEU ASN LYS ASP ARG LEU GLU TYR SEQRES 11 C 211 GLY TYR ILE SER THR SER LEU MET ASN VAL SER GLN PHE SEQRES 12 C 211 ALA GLY ARG PRO ILE ILE THR LYS PHE LYS VAL ALA LYS SEQRES 13 C 211 GLY SER LYS ALA GLY TYR ILE ASP PRO ILE SER ALA PHE SEQRES 14 C 211 ALA GLY GLN LEU GLU MET LEU LEU PRO ARG HIS SER THR SEQRES 15 C 211 TYR HIS ILE ASP ASP MET ARG LEU SER SER ASP GLY LYS SEQRES 16 C 211 GLN ILE ILE ILE THR ALA THR MET MET GLY THR ALA ILE SEQRES 17 C 211 ASN PRO LYS SEQRES 1 D 211 ALA TYR SER ASN THR TYR GLN GLU PHE THR ASN ILE ASP SEQRES 2 D 211 GLN ALA LYS ALA TRP GLY ASN ALA GLN TYR LYS LYS TYR SEQRES 3 D 211 GLY LEU SER LYS SER GLU LYS GLU ALA ILE VAL SER TYR SEQRES 4 D 211 THR LYS SER ALA SER GLU ILE ASN GLY LYS LEU ARG GLN SEQRES 5 D 211 ASN LYS GLY VAL ILE ASN GLY PHE PRO SER ASN LEU ILE SEQRES 6 D 211 LYS GLN VAL GLU LEU LEU ASP LYS SER PHE ASN LYS MET SEQRES 7 D 211 LYS THR PRO GLU ASN ILE MET LEU PHE ARG GLY ASP ASP SEQRES 8 D 211 PRO ALA TYR LEU GLY THR GLU PHE GLN ASN THR LEU LEU SEQRES 9 D 211 ASN SER ASN GLY THR ILE ASN LYS THR ALA PHE GLU LYS SEQRES 10 D 211 ALA LYS ALA LYS PHE LEU ASN LYS ASP ARG LEU GLU TYR SEQRES 11 D 211 GLY TYR ILE SER THR SER LEU MET ASN VAL SER GLN PHE SEQRES 12 D 211 ALA GLY ARG PRO ILE ILE THR LYS PHE LYS VAL ALA LYS SEQRES 13 D 211 GLY SER LYS ALA GLY TYR ILE ASP PRO ILE SER ALA PHE SEQRES 14 D 211 ALA GLY GLN LEU GLU MET LEU LEU PRO ARG HIS SER THR SEQRES 15 D 211 TYR HIS ILE ASP ASP MET ARG LEU SER SER ASP GLY LYS SEQRES 16 D 211 GLN ILE ILE ILE THR ALA THR MET MET GLY THR ALA ILE SEQRES 17 D 211 ASN PRO LYS HET SO4 A1249 5 HET SO4 B1253 5 HET NAD A1248 44 HET NAD B1252 44 HET NIR C1252 17 HET ADP C1253 27 HET ADP D1247 27 HETNAM SO4 SULFATE ION HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM NIR 3-(AMINOCARBONYL)-1-[(3R,4S,5R)-3,4- HETNAM 2 NIR DIHYDROXY-5-METHYLTETRAHYDRO-2-FURANYL] HETNAM 3 NIR PYRIDINIUM HETNAM ADP ADENOSINE-5'-DIPHOSPHATE FORMUL 5 SO4 2(O4 S 2-) FORMUL 7 NAD 2(C21 H27 N7 O14 P2) FORMUL 9 NIR C11 H18 N2 O4 1+ FORMUL 10 ADP 2(C10 H15 N5 O10 P2) FORMUL 12 HOH *570(H2 O1) HELIX 1 1 ASN A 51 GLY A 67 1 17 HELIX 2 2 SER A 69 ASN A 93 1 25 HELIX 3 3 PRO A 101 PHE A 115 1 15 HELIX 4 4 ASP A 131 GLY A 136 5 6 HELIX 5 5 GLY A 136 GLN A 140 5 5 HELIX 6 6 ASN A 151 LEU A 163 1 13 HELIX 7 7 VAL A 180 GLY A 185 1 6 HELIX 8 8 ASP A 204 SER A 207 5 4 HELIX 9 9 ASN B 51 GLY B 67 1 17 HELIX 10 10 SER B 69 SER B 82 1 14 HELIX 11 11 SER B 82 ASN B 93 1 12 HELIX 12 12 PRO B 101 PHE B 115 1 15 HELIX 13 13 ASP B 131 LEU B 135 5 5 HELIX 14 14 GLY B 136 ASN B 141 1 6 HELIX 15 15 ASN B 151 LEU B 163 1 13 HELIX 16 16 VAL B 180 GLY B 185 1 6 HELIX 17 17 ASN C 51 GLY C 67 1 17 HELIX 18 18 SER C 69 ASN C 93 1 25 HELIX 19 19 PRO C 101 PHE C 115 1 15 HELIX 20 20 ASP C 131 GLY C 136 5 6 HELIX 21 21 ASN C 151 LEU C 163 1 13 HELIX 22 22 VAL C 180 GLY C 185 1 6 HELIX 23 23 ASN D 51 GLY D 67 1 17 HELIX 24 24 SER D 69 ASN D 93 1 25 HELIX 25 25 PRO D 101 PHE D 115 1 15 HELIX 26 26 ASP D 131 LEU D 135 5 5 HELIX 27 27 GLY D 136 ASN D 141 1 6 HELIX 28 28 ASN D 151 LEU D 163 1 13 HELIX 29 29 VAL D 180 GLY D 185 1 6 SHEET 1 AA 5 ILE A 124 ASP A 130 0 SHEET 2 AA 5 ILE A 188 VAL A 194 -1 O ILE A 188 N ASP A 130 SHEET 3 AA 5 ILE A 237 MET A 243 1 O ILE A 237 N ILE A 189 SHEET 4 AA 5 SER A 221 LEU A 230 -1 O HIS A 224 N THR A 242 SHEET 5 AA 5 ASP A 166 GLU A 169 -1 O ARG A 167 N TYR A 223 SHEET 1 AB 3 ILE A 173 SER A 176 0 SHEET 2 AB 3 GLU A 214 LEU A 217 -1 O MET A 215 N THR A 175 SHEET 3 AB 3 GLY A 201 TYR A 202 -1 O GLY A 201 N LEU A 216 SHEET 1 BA 2 TYR B 42 SER B 43 0 SHEET 2 BA 2 TYR B 46 GLN B 47 -1 O TYR B 46 N SER B 43 SHEET 1 BB 5 ILE B 124 ASP B 130 0 SHEET 2 BB 5 ILE B 188 VAL B 194 -1 O ILE B 188 N ASP B 130 SHEET 3 BB 5 ILE B 237 GLY B 245 1 O ILE B 237 N ILE B 189 SHEET 4 BB 5 SER B 221 LEU B 230 -1 O THR B 222 N MET B 244 SHEET 5 BB 5 ASP B 166 GLU B 169 -1 O ARG B 167 N TYR B 223 SHEET 1 BC 3 ILE B 173 SER B 176 0 SHEET 2 BC 3 GLU B 214 LEU B 217 -1 O MET B 215 N THR B 175 SHEET 3 BC 3 GLY B 201 TYR B 202 -1 O GLY B 201 N LEU B 216 SHEET 1 CA 5 ILE C 124 ASP C 130 0 SHEET 2 CA 5 ILE C 188 VAL C 194 -1 O ILE C 188 N ASP C 130 SHEET 3 CA 5 ILE C 237 THR C 246 1 O ILE C 237 N ILE C 189 SHEET 4 CA 5 SER C 221 LEU C 230 -1 O THR C 222 N MET C 244 SHEET 5 CA 5 ASP C 166 GLU C 169 -1 O ARG C 167 N TYR C 223 SHEET 1 CB 3 ILE C 173 SER C 176 0 SHEET 2 CB 3 GLU C 214 LEU C 217 -1 O MET C 215 N THR C 175 SHEET 3 CB 3 GLY C 201 TYR C 202 -1 O GLY C 201 N LEU C 216 SHEET 1 DA 5 ILE D 124 ASP D 130 0 SHEET 2 DA 5 ILE D 188 VAL D 194 -1 O ILE D 188 N ASP D 130 SHEET 3 DA 5 ILE D 237 MET D 243 1 O ILE D 237 N ILE D 189 SHEET 4 DA 5 SER D 221 LEU D 230 -1 O HIS D 224 N THR D 242 SHEET 5 DA 5 ASP D 166 GLU D 169 -1 O ARG D 167 N TYR D 223 SHEET 1 DB 3 ILE D 173 SER D 176 0 SHEET 2 DB 3 GLU D 214 LEU D 217 -1 O MET D 215 N THR D 175 SHEET 3 DB 3 GLY D 201 TYR D 202 -1 O GLY D 201 N LEU D 216 SITE 1 AC1 9 LYS A 56 ASP A 204 ALA A 210 GLY A 211 SITE 2 AC1 9 HOH A2133 HOH A2166 HOH A2167 HOH A2168 SITE 3 AC1 9 LYS C 251 SITE 1 AC2 6 ALA B 41 SER B 43 GLU B 48 THR B 50 SITE 2 AC2 6 LYS B 191 HOH B2005 SITE 1 AC3 20 THR A 80 ASN A 87 ARG A 91 ARG A 128 SITE 2 AC3 20 GLY A 129 ASP A 130 ASP A 131 ALA A 133 SITE 3 AC3 20 ARG A 167 GLU A 169 THR A 175 SER A 176 SITE 4 AC3 20 PHE A 183 ARG A 186 GLN A 212 GLU A 214 SITE 5 AC3 20 HOH A2160 HOH A2161 HOH A2164 HOH A2165 SITE 1 AC4 17 ASN B 87 ARG B 91 ARG B 128 GLY B 129 SITE 2 AC4 17 ASP B 130 ASP B 131 ALA B 133 ARG B 167 SITE 3 AC4 17 GLU B 169 SER B 174 PHE B 183 ARG B 186 SITE 4 AC4 17 PHE B 209 GLY B 211 HOH B2098 HOH B2124 SITE 5 AC4 17 HOH B2125 SITE 1 AC5 13 ALA C 83 ARG C 128 GLY C 129 SER C 174 SITE 2 AC5 13 THR C 175 SER C 176 PHE C 183 GLY C 211 SITE 3 AC5 13 GLU C 214 ADP C1253 HOH C2033 HOH C2087 SITE 4 AC5 13 HOH C2113 SITE 1 AC6 13 SER C 84 ASN C 87 ARG C 91 ARG C 128 SITE 2 AC6 13 ASP C 130 ASP C 131 ALA C 133 ARG C 167 SITE 3 AC6 13 GLU C 169 ARG C 186 NIR C1252 HOH C2138 SITE 4 AC6 13 HOH C2139 SITE 1 AC7 7 ARG D 128 ASP D 130 ASP D 131 ALA D 133 SITE 2 AC7 7 ARG D 167 GLU D 169 ARG D 186 CRYST1 103.947 74.191 119.680 90.00 102.10 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009620 0.000000 0.002062 0.00000 SCALE2 0.000000 0.013479 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008545 0.00000