HEADER    ISOMERASE                               26-JUN-02   1H0P              
TITLE     CYCLOPHILIN_5 FROM C. ELEGANS                                         
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 5;                     
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: RESIDUES 23-204;                                           
COMPND   5 SYNONYM: PPIASE, ROTAMASE, CYCLOPHILIN-5;                            
COMPND   6 EC: 5.2.1.8;                                                         
COMPND   7 ENGINEERED: YES;                                                     
COMPND   8 MUTATION: YES                                                        
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: CAENORHABDITIS ELEGANS;                         
SOURCE   3 ORGANISM_TAXID: 6239;                                                
SOURCE   4 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   5 EXPRESSION_SYSTEM_TAXID: 469008;                                     
SOURCE   6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3);                                 
SOURCE   7 EXPRESSION_SYSTEM_PLASMID: PET15B                                    
KEYWDS    ISOMERASE, ROTAMASE                                                   
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    N.C.PICKEN,S.ESCHENLAUER,P.TAYLOR,A.P.PAGE,M.D.WALKINSHAW             
REVDAT   4   13-DEC-23 1H0P    1       REMARK                                   
REVDAT   3   22-MAY-19 1H0P    1       REMARK                                   
REVDAT   2   24-FEB-09 1H0P    1       VERSN                                    
REVDAT   1   12-SEP-02 1H0P    0                                                
JRNL        AUTH   N.C.PICKEN,S.ESCHENLAUER,P.TAYLOR,A.P.PAGE,M.D.WALKINSHAW    
JRNL        TITL   STRUCTURAL AND BIOLOGICAL CHARACTERISATION OF THE            
JRNL        TITL 2 GUT-ASSOCIATED CYCLOPHILIN B ISOFORMS FROM CAENORHABDITIS    
JRNL        TITL 3 ELEGANS                                                      
JRNL        REF    J.MOL.BIOL.                   V. 322    15 2002              
JRNL        REFN                   ISSN 0022-2836                               
JRNL        PMID   12215411                                                     
JRNL        DOI    10.1016/S0022-2836(02)00712-X                                
REMARK   2                                                                      
REMARK   2 RESOLUTION.    1.75 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : SHELXL-97                                            
REMARK   3   AUTHORS     : G.M.SHELDRICK                                        
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 10.00                          
REMARK   3   DATA CUTOFF            (SIGMA(F)) : 0.000                          
REMARK   3   COMPLETENESS FOR RANGE        (%) : 94.8                           
REMARK   3   CROSS-VALIDATION METHOD           : FREE R-VALUE                   
REMARK   3   FREE R VALUE TEST SET SELECTION   : RANDOM                         
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT (NO CUTOFF).                         
REMARK   3   R VALUE   (WORKING + TEST SET, NO CUTOFF) : 0.180                  
REMARK   3   R VALUE          (WORKING SET, NO CUTOFF) : 0.182                  
REMARK   3   FREE R VALUE                  (NO CUTOFF) : 0.250                  
REMARK   3   FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : 5.400                  
REMARK   3   FREE R VALUE TEST SET COUNT   (NO CUTOFF) : 1087                   
REMARK   3   TOTAL NUMBER OF REFLECTIONS   (NO CUTOFF) : 21525                  
REMARK   3                                                                      
REMARK   3  FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F).                     
REMARK   3   R VALUE   (WORKING + TEST SET, F>4SIG(F)) : 0.169                  
REMARK   3   R VALUE          (WORKING SET, F>4SIG(F)) : 0.172                  
REMARK   3   FREE R VALUE                  (F>4SIG(F)) : 0.236                  
REMARK   3   FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : 5.400                  
REMARK   3   FREE R VALUE TEST SET COUNT   (F>4SIG(F)) : 919                    
REMARK   3   TOTAL NUMBER OF REFLECTIONS   (F>4SIG(F)) : 17035                  
REMARK   3                                                                      
REMARK   3  NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.                    
REMARK   3   PROTEIN ATOMS      : 1402                                          
REMARK   3   NUCLEIC ACID ATOMS : 0                                             
REMARK   3   HETEROGEN ATOMS    : 8                                             
REMARK   3   SOLVENT ATOMS      : 201                                           
REMARK   3                                                                      
REMARK   3  MODEL REFINEMENT.                                                   
REMARK   3   OCCUPANCY SUM OF NON-HYDROGEN ATOMS      : 1608.3                  
REMARK   3   OCCUPANCY SUM OF HYDROGEN ATOMS          : NULL                    
REMARK   3   NUMBER OF DISCRETELY DISORDERED RESIDUES : 2                       
REMARK   3   NUMBER OF LEAST-SQUARES PARAMETERS       : 6488                    
REMARK   3   NUMBER OF RESTRAINTS                     : 5794                    
REMARK   3                                                                      
REMARK   3  RMS DEVIATIONS FROM RESTRAINT TARGET VALUES.                        
REMARK   3   BOND LENGTHS                         (A) : 0.007                   
REMARK   3   ANGLE DISTANCES                      (A) : 0.023                   
REMARK   3   SIMILAR DISTANCES (NO TARGET VALUES) (A) : 0.000                   
REMARK   3   DISTANCES FROM RESTRAINT PLANES      (A) : 0.027                   
REMARK   3   ZERO CHIRAL VOLUMES               (A**3) : 0.035                   
REMARK   3   NON-ZERO CHIRAL VOLUMES           (A**3) : 0.049                   
REMARK   3   ANTI-BUMPING DISTANCE RESTRAINTS     (A) : 0.016                   
REMARK   3   RIGID-BOND ADP COMPONENTS         (A**2) : 0.000                   
REMARK   3   SIMILAR ADP COMPONENTS            (A**2) : 0.069                   
REMARK   3   APPROXIMATELY ISOTROPIC ADPS      (A**2) : 0.000                   
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELING.                                              
REMARK   3   METHOD USED: MOEWS & KRETSINGER                                    
REMARK   3                                                                      
REMARK   3  STEREOCHEMISTRY TARGET VALUES : ENGH AND HUBER                      
REMARK   3   SPECIAL CASE: NULL                                                 
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 1H0P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-JUN-02.                  
REMARK 100 THE DEPOSITION ID IS D_1290011040.                                   
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : NULL                               
REMARK 200  TEMPERATURE           (KELVIN) : 100.0                              
REMARK 200  PH                             : 6.00                               
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : Y                                  
REMARK 200  RADIATION SOURCE               : SRS                                
REMARK 200  BEAMLINE                       : PX14.1                             
REMARK 200  X-RAY GENERATOR MODEL          : NULL                               
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 1.488                              
REMARK 200  MONOCHROMATOR                  : NULL                               
REMARK 200  OPTICS                         : NULL                               
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : CCD                                
REMARK 200  DETECTOR MANUFACTURER          : ADSC CCD                           
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : DENZO                              
REMARK 200  DATA SCALING SOFTWARE          : SCALEPACK                          
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 21525                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 1.750                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 24.000                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : 3.000                              
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 99.9                               
REMARK 200  DATA REDUNDANCY                : 9.500                              
REMARK 200  R MERGE                    (I) : 0.08600                            
REMARK 200  R SYM                      (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : 27.7000                            
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 1.78                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : 100.0                              
REMARK 200  DATA REDUNDANCY IN SHELL       : 7.50                               
REMARK 200  R MERGE FOR SHELL          (I) : 0.53000                            
REMARK 200  R SYM FOR SHELL            (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR SHELL         : 3.700                              
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT        
REMARK 200 SOFTWARE USED: MOLREP                                                
REMARK 200 STARTING MODEL: PDB ENTRY 1E8K                                       
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 47.90                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.0, PEG 4000, LITHIUM CHLORIDE, PH   
REMARK 280  6.00                                                                
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61                             
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -Y,X-Y,Z+1/3                                            
REMARK 290       3555   -X+Y,-X,Z+2/3                                           
REMARK 290       4555   -X,-Y,Z+1/2                                             
REMARK 290       5555   Y,-X+Y,Z+5/6                                            
REMARK 290       6555   X-Y,X,Z+1/6                                             
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -0.500000 -0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   2  0.866025 -0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   2  0.000000  0.000000  1.000000       13.74633            
REMARK 290   SMTRY1   3 -0.500000  0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   3 -0.866025 -0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   3  0.000000  0.000000  1.000000       27.49267            
REMARK 290   SMTRY1   4 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   4  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   4  0.000000  0.000000  1.000000       20.61950            
REMARK 290   SMTRY1   5  0.500000  0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   5 -0.866025  0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   5  0.000000  0.000000  1.000000       34.36583            
REMARK 290   SMTRY1   6  0.500000 -0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   6  0.866025  0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   6  0.000000  0.000000  1.000000        6.87317            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                         
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC                  
REMARK 350 SOFTWARE USED: PQS                                                   
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES                                       
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)              
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                        
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                     
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   ATM2   ATM3                                     
REMARK 500    ARG A  29   NE  -  CZ  -  NH1 ANGL. DEV. =  -4.5 DEGREES          
REMARK 500    TYR A  31   CB  -  CG  -  CD1 ANGL. DEV. =   3.9 DEGREES          
REMARK 500    ARG A 164   NE  -  CZ  -  NH2 ANGL. DEV. =  -3.4 DEGREES          
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    PHE A  84      -76.77   -149.76                                   
REMARK 500    ASP A 192      -74.05    -23.21                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DTT A1204                 
DBREF  1H0P A   22   203  UNP    P52013   CYP5_CAEEL      23    204             
SEQADV 1H0P ARG A   29  UNP  P52013    LYS    30 ENGINEERED MUTATION            
SEQRES   1 A  182  LYS GLY PRO LYS VAL THR ASP ARG VAL TYR PHE ASP MET          
SEQRES   2 A  182  GLU ILE GLY GLY LYS PRO ILE GLY ARG ILE VAL ILE GLY          
SEQRES   3 A  182  LEU PHE GLY LYS THR VAL PRO LYS THR ALA THR ASN PHE          
SEQRES   4 A  182  ILE GLU LEU ALA LYS LYS PRO LYS GLY GLU GLY TYR PRO          
SEQRES   5 A  182  GLY SER LYS PHE HIS ARG VAL ILE ALA ASP PHE MET ILE          
SEQRES   6 A  182  GLN GLY GLY ASP PHE THR ARG GLY ASP GLY THR GLY GLY          
SEQRES   7 A  182  ARG SER ILE TYR GLY GLU LYS PHE ALA ASP GLU ASN PHE          
SEQRES   8 A  182  LYS LEU LYS HIS TYR GLY ALA GLY TRP LEU SER MET ALA          
SEQRES   9 A  182  ASN ALA GLY ALA ASP THR ASN GLY SER GLN PHE PHE ILE          
SEQRES  10 A  182  THR THR VAL LYS THR PRO TRP LEU ASP GLY ARG HIS VAL          
SEQRES  11 A  182  VAL PHE GLY LYS ILE LEU GLU GLY MET ASP VAL VAL ARG          
SEQRES  12 A  182  LYS ILE GLU GLN THR GLU LYS LEU PRO GLY ASP ARG PRO          
SEQRES  13 A  182  LYS GLN ASP VAL ILE ILE ALA ALA SER GLY HIS ILE ALA          
SEQRES  14 A  182  VAL ASP THR PRO PHE SER VAL GLU ARG GLU ALA VAL VAL          
HET    DTT  A1204       8                                                       
HETNAM     DTT 2,3-DIHYDROXY-1,4-DITHIOBUTANE                                   
HETSYN     DTT 1,4-DITHIOTHREITOL                                               
FORMUL   2  DTT    C4 H10 O2 S2                                                 
FORMUL   3  HOH   *201(H2 O)                                                    
HELIX    1   1 VAL A   53  LYS A   66  1                                  14    
HELIX    2   2 THR A  143  ASP A  147  5                                   5    
HELIX    3   3 GLY A  159  GLN A  168  1                                  10    
SHEET    1  AA 8 ARG A  79  ILE A  81  0                                        
SHEET    2  AA 8 MET A  85  GLY A  88 -1  O  MET A  85   N  ILE A  81           
SHEET    3  AA 8 PHE A 136  THR A 139 -1  O  PHE A 136   N  GLY A  88           
SHEET    4  AA 8 TRP A 121  MET A 124 -1  O  TRP A 121   N  THR A 139           
SHEET    5  AA 8 VAL A 152  GLU A 158 -1  N  PHE A 153   O  LEU A 122           
SHEET    6  AA 8 LYS A  39  LEU A  48 -1  O  VAL A  45   N  LEU A 157           
SHEET    7  AA 8 LYS A  25  ILE A  36 -1  N  THR A  27   O  LEU A  48           
SHEET    8  AA 8 VAL A 181  SER A 196 -1  O  ILE A 182   N  GLU A  35           
SHEET    1  AB 2 LYS A 171  LEU A 172  0                                        
SHEET    2  AB 2 ARG A 176  PRO A 177 -1  O  ARG A 176   N  LEU A 172           
SITE     1 AC1  6 ARG A  79  ASN A 126  LEU A 146  ARG A 149                    
SITE     2 AC1  6 HIS A 150  HOH A2138                                          
CRYST1   94.115   94.115   41.239  90.00  90.00 120.00 P 61          6          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.010625  0.006134  0.000000        0.00000                         
SCALE2      0.000000  0.012269  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.024249        0.00000