data_1H0Q # _entry.id 1H0Q # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1H0Q pdb_00001h0q 10.2210/pdb1h0q/pdb PDBE EBI-9917 ? ? WWPDB D_1290009917 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2003-07-17 2 'Structure model' 1 1 2011-05-08 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-05-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_database_status 5 4 'Structure model' pdbx_nmr_software 6 4 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_database_status.status_code_mr' 4 4 'Structure model' '_pdbx_nmr_software.name' 5 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1H0Q _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2002-06-27 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Rasmussen, J.' 1 'Petersen, M.' 2 'Nielsen, K.E.' 3 'Kumar, R.' 4 'Wengel, J.' 5 'Jacobsen, J.P.' 6 # _citation.id primary _citation.title ;NMR Studies of Fully Modified Locked Nucleic Acid (Lna) Hybrids: Solution Structure of an Lna:RNA Hybrid and Characterization of an Lna:RNA Hybrid ; _citation.journal_abbrev Bioconjug.Chem. _citation.journal_volume 15 _citation.page_first 449 _citation.page_last ? _citation.year 2004 _citation.journal_id_ASTM BCCHES _citation.country US _citation.journal_id_ISSN 1043-1802 _citation.journal_id_CSD 2063 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15149171 _citation.pdbx_database_id_DOI 10.1021/BC034145H # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Nielsen, K.E.' 1 ? primary 'Rasmussen, J.' 2 ? primary 'Kumar, R.' 3 ? primary 'Wengel, J.' 4 ? primary 'Jacobsen, J.P.' 5 ? primary 'Petersen, M.' 6 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn '5-D(*(LKC)P*(TLN)P*(LCG)P*(LCA)P*(TLN)P*(LCA)P* (TLN)P*(LCG)P*(LCC))-3' 2930.977 1 ? ? ? 'FULLY MODIFIED LNA STRAND' 2 polymer syn '5-R(*GP*CP*AP*UP*AP*UP*CP*AP*G)-3' 2855.767 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no yes '(LKC)(TLN)(LCG)(LCA)(TLN)(LCA)(TLN)(LCG)(LCC)' NUGAUAUGN A ? 2 polyribonucleotide no no GCAUAUCAG GCAUAUCAG B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LKC n 1 2 TLN n 1 3 LCG n 1 4 LCA n 1 5 TLN n 1 6 LCA n 1 7 TLN n 1 8 LCG n 1 9 LCC n 2 1 G n 2 2 C n 2 3 A n 2 4 U n 2 5 A n 2 6 U n 2 7 C n 2 8 A n 2 9 G n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 LCA 'RNA linking' n '[(1R,3R,4R,7S)-7-HYDROXY-3-(ADENIN-9-YL)-2,5-DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN PHOSPHATE' ? 'C11 H14 N5 O7 P' 359.232 LCC 'RNA linking' . '[(1R,3R,4R,7S)-7-HYDROXY-3-(5-METHYLCYTOSIN-1-YL)-2,5-DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN PHOSPHATE' ? 'C11 H16 N3 O8 P' 349.234 LCG 'RNA linking' n '[(1R,3R,4R,7S)-7-HYDROXY-3-(GUANIN-9-YL)-2,5-DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN PHOSPHATE' ? 'C11 H14 N5 O8 P' 375.231 LKC 'RNA linking' . '4-AMINO-1-[(1S,3R,4R,7S)-7-HYDROXY-1-(HYDROXYMETHYL)-2,5-DIOXABICYCLO[2.2.1]HEPT-3-YL]-5-METHYLPYRIMIDIN-2(1H)-ONE' ? 'C11 H15 N3 O5' 269.254 TLN 'RNA linking' n '[(1R,3R,4R,7S)-7-HYDROXY-3-(THYMIN-1-YL)-2,5-DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN PHOSPHATE' ? 'C11 H15 N2 O9 P' 350.219 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LKC 1 1 1 LKC LKC A . n A 1 2 TLN 2 2 2 TLN TLN A . n A 1 3 LCG 3 3 3 LCG LCG A . n A 1 4 LCA 4 4 4 LCA LCA A . n A 1 5 TLN 5 5 5 TLN TLN A . n A 1 6 LCA 6 6 6 LCA LCA A . n A 1 7 TLN 7 7 7 TLN TLN A . n A 1 8 LCG 8 8 8 LCG LCG A . n A 1 9 LCC 9 9 9 LCC LCC A . n B 2 1 G 1 10 10 G G B . n B 2 2 C 2 11 11 C C B . n B 2 3 A 3 12 12 A A B . n B 2 4 U 4 13 13 U U B . n B 2 5 A 5 14 14 A A B . n B 2 6 U 6 15 15 U U B . n B 2 7 C 7 16 16 C C B . n B 2 8 A 8 17 17 A A B . n B 2 9 G 9 18 18 G G B . n # _cell.entry_id 1H0Q _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1H0Q _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _exptl.entry_id 1H0Q _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _database_PDB_matrix.entry_id 1H0Q _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1H0Q _struct.title 'NMR solution structure of a fully modified locked nucleic acid (LNA) hybridized to RNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1H0Q _struct_keywords.pdbx_keywords 'DNA-RNA HYBRID' _struct_keywords.text 'DNA-RNA HYBRID, LNA, RNA, LOCKED NUCLEIC ACID, HYBRID, DNA/RNA HYBRID' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 PDB 1H0Q 1 ? ? 1H0Q ? 2 PDB 1H0Q 2 ? ? 1H0Q ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1H0Q A 1 ? 9 ? 1H0Q 1 ? 9 ? 1 9 2 2 1H0Q B 1 ? 9 ? 1H0Q 10 ? 18 ? 10 18 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A LKC 1 "O3'" ? ? ? 1_555 A TLN 2 P ? ? A LKC 1 A TLN 2 1_555 ? ? ? ? ? ? ? 1.612 ? ? covale2 covale both ? A TLN 2 "O3'" ? ? ? 1_555 A LCG 3 P ? ? A TLN 2 A LCG 3 1_555 ? ? ? ? ? ? ? 1.612 ? ? covale3 covale both ? A LCG 3 "O3'" ? ? ? 1_555 A LCA 4 P ? ? A LCG 3 A LCA 4 1_555 ? ? ? ? ? ? ? 1.615 ? ? covale4 covale one ? A LCA 4 "O3'" ? ? ? 1_555 A TLN 5 P ? ? A LCA 4 A TLN 5 1_555 ? ? ? ? ? ? ? 1.611 ? ? covale5 covale both ? A LCG 8 "O3'" ? ? ? 1_555 A LCC 9 P ? ? A LCG 8 A LCC 9 1_555 ? ? ? ? ? ? ? 1.613 ? ? hydrog1 hydrog ? ? A TLN 2 N3 ? ? ? 1_555 B A 8 N1 ? ? A TLN 2 B A 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A TLN 2 O4 ? ? ? 1_555 B A 8 N6 ? ? A TLN 2 B A 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A LCG 3 N1 ? ? ? 1_555 B C 7 N3 ? ? A LCG 3 B C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A LCG 3 N2 ? ? ? 1_555 B C 7 O2 ? ? A LCG 3 B C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A LCG 3 O6 ? ? ? 1_555 B C 7 N4 ? ? A LCG 3 B C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A LCA 4 N1 ? ? ? 1_555 B U 6 N3 ? ? A LCA 4 B U 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A LCA 4 N6 ? ? ? 1_555 B U 6 O4 ? ? A LCA 4 B U 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A TLN 5 N3 ? ? ? 1_555 B A 5 N1 ? ? A TLN 5 B A 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A TLN 5 O4 ? ? ? 1_555 B A 5 N6 ? ? A TLN 5 B A 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A LCA 6 N1 ? ? ? 1_555 B U 4 N3 ? ? A LCA 6 B U 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A LCA 6 N6 ? ? ? 1_555 B U 4 O4 ? ? A LCA 6 B U 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A TLN 7 N3 ? ? ? 1_555 B A 3 N1 ? ? A TLN 7 B A 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A TLN 7 O4 ? ? ? 1_555 B A 3 N6 ? ? A TLN 7 B A 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A LCG 8 N1 ? ? ? 1_555 B C 2 N3 ? ? A LCG 8 B C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A LCG 8 N2 ? ? ? 1_555 B C 2 O2 ? ? A LCG 8 B C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A LCG 8 O6 ? ? ? 1_555 B C 2 N4 ? ? A LCG 8 B C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" B U 13 ? ? "C1'" B U 13 ? ? N1 B U 13 ? ? 114.40 108.50 5.90 0.70 N 2 1 "O4'" B U 15 ? ? "C1'" B U 15 ? ? N1 B U 15 ? ? 113.67 108.50 5.17 0.70 N 3 1 "O4'" B C 16 ? ? "C1'" B C 16 ? ? N1 B C 16 ? ? 113.13 108.50 4.63 0.70 N 4 2 "O4'" B U 13 ? ? "C1'" B U 13 ? ? N1 B U 13 ? ? 114.52 108.50 6.02 0.70 N 5 2 "O4'" B U 15 ? ? "C1'" B U 15 ? ? N1 B U 15 ? ? 113.84 108.50 5.34 0.70 N 6 3 "O4'" B U 13 ? ? "C1'" B U 13 ? ? N1 B U 13 ? ? 114.25 108.50 5.75 0.70 N 7 3 "O4'" B U 15 ? ? "C1'" B U 15 ? ? N1 B U 15 ? ? 113.95 108.50 5.45 0.70 N 8 3 "O4'" B C 16 ? ? "C1'" B C 16 ? ? N1 B C 16 ? ? 113.34 108.50 4.84 0.70 N 9 4 "O4'" B C 11 ? ? "C1'" B C 11 ? ? N1 B C 11 ? ? 114.88 108.50 6.38 0.70 N 10 4 "O4'" B U 13 ? ? "C1'" B U 13 ? ? N1 B U 13 ? ? 114.16 108.50 5.66 0.70 N 11 4 "O4'" B U 15 ? ? "C1'" B U 15 ? ? N1 B U 15 ? ? 114.01 108.50 5.51 0.70 N 12 4 "O4'" B C 16 ? ? "C1'" B C 16 ? ? N1 B C 16 ? ? 113.27 108.50 4.77 0.70 N 13 5 "O4'" B C 11 ? ? "C1'" B C 11 ? ? N1 B C 11 ? ? 115.28 108.50 6.78 0.70 N 14 5 "O4'" B U 13 ? ? "C1'" B U 13 ? ? N1 B U 13 ? ? 114.54 108.50 6.04 0.70 N 15 5 "O4'" B U 15 ? ? "C1'" B U 15 ? ? N1 B U 15 ? ? 113.63 108.50 5.13 0.70 N 16 6 "O4'" B C 11 ? ? "C1'" B C 11 ? ? N1 B C 11 ? ? 114.81 108.50 6.31 0.70 N 17 6 "O4'" B U 13 ? ? "C1'" B U 13 ? ? N1 B U 13 ? ? 114.27 108.50 5.77 0.70 N 18 6 "O4'" B U 15 ? ? "C1'" B U 15 ? ? N1 B U 15 ? ? 114.00 108.50 5.50 0.70 N 19 6 "O4'" B C 16 ? ? "C1'" B C 16 ? ? N1 B C 16 ? ? 113.05 108.50 4.55 0.70 N 20 7 "O4'" B G 10 ? ? "C1'" B G 10 ? ? N9 B G 10 ? ? 112.72 108.50 4.22 0.70 N 21 7 "O4'" B U 13 ? ? "C1'" B U 13 ? ? N1 B U 13 ? ? 114.23 108.50 5.73 0.70 N 22 7 "O4'" B U 15 ? ? "C1'" B U 15 ? ? N1 B U 15 ? ? 113.85 108.50 5.35 0.70 N 23 7 "O4'" B C 16 ? ? "C1'" B C 16 ? ? N1 B C 16 ? ? 113.02 108.50 4.52 0.70 N 24 8 "O4'" B U 13 ? ? "C1'" B U 13 ? ? N1 B U 13 ? ? 114.32 108.50 5.82 0.70 N 25 8 "O4'" B U 15 ? ? "C1'" B U 15 ? ? N1 B U 15 ? ? 113.88 108.50 5.38 0.70 N 26 8 "O4'" B C 16 ? ? "C1'" B C 16 ? ? N1 B C 16 ? ? 113.50 108.50 5.00 0.70 N 27 9 "O4'" B U 13 ? ? "C1'" B U 13 ? ? N1 B U 13 ? ? 114.32 108.50 5.82 0.70 N 28 9 "O4'" B U 15 ? ? "C1'" B U 15 ? ? N1 B U 15 ? ? 114.24 108.50 5.74 0.70 N 29 9 "O4'" B C 16 ? ? "C1'" B C 16 ? ? N1 B C 16 ? ? 113.21 108.50 4.71 0.70 N 30 10 "O4'" B C 11 ? ? "C1'" B C 11 ? ? N1 B C 11 ? ? 115.23 108.50 6.73 0.70 N 31 10 "O4'" B U 13 ? ? "C1'" B U 13 ? ? N1 B U 13 ? ? 114.37 108.50 5.87 0.70 N 32 10 "O4'" B U 15 ? ? "C1'" B U 15 ? ? N1 B U 15 ? ? 113.97 108.50 5.47 0.70 N 33 10 "O4'" B C 16 ? ? "C1'" B C 16 ? ? N1 B C 16 ? ? 113.03 108.50 4.53 0.70 N 34 11 "O4'" B U 13 ? ? "C1'" B U 13 ? ? N1 B U 13 ? ? 114.66 108.50 6.16 0.70 N 35 11 "O4'" B U 15 ? ? "C1'" B U 15 ? ? N1 B U 15 ? ? 114.22 108.50 5.72 0.70 N 36 11 "O4'" B C 16 ? ? "C1'" B C 16 ? ? N1 B C 16 ? ? 113.39 108.50 4.89 0.70 N 37 12 "O4'" B U 13 ? ? "C1'" B U 13 ? ? N1 B U 13 ? ? 114.69 108.50 6.19 0.70 N 38 12 "O4'" B U 15 ? ? "C1'" B U 15 ? ? N1 B U 15 ? ? 113.90 108.50 5.40 0.70 N 39 12 "O4'" B C 16 ? ? "C1'" B C 16 ? ? N1 B C 16 ? ? 112.89 108.50 4.39 0.70 N 40 13 "O4'" B C 11 ? ? "C1'" B C 11 ? ? N1 B C 11 ? ? 115.20 108.50 6.70 0.70 N 41 13 "O4'" B U 13 ? ? "C1'" B U 13 ? ? N1 B U 13 ? ? 114.84 108.50 6.34 0.70 N 42 13 "O4'" B U 15 ? ? "C1'" B U 15 ? ? N1 B U 15 ? ? 113.85 108.50 5.35 0.70 N 43 13 "O4'" B C 16 ? ? "C1'" B C 16 ? ? N1 B C 16 ? ? 113.28 108.50 4.78 0.70 N 44 14 "O4'" B U 13 ? ? "C1'" B U 13 ? ? N1 B U 13 ? ? 114.43 108.50 5.93 0.70 N 45 14 "O4'" B U 15 ? ? "C1'" B U 15 ? ? N1 B U 15 ? ? 113.89 108.50 5.39 0.70 N 46 14 "O4'" B C 16 ? ? "C1'" B C 16 ? ? N1 B C 16 ? ? 113.08 108.50 4.58 0.70 N 47 15 "O4'" B U 13 ? ? "C1'" B U 13 ? ? N1 B U 13 ? ? 114.47 108.50 5.97 0.70 N 48 15 "O4'" B U 15 ? ? "C1'" B U 15 ? ? N1 B U 15 ? ? 114.10 108.50 5.60 0.70 N 49 15 "O4'" B C 16 ? ? "C1'" B C 16 ? ? N1 B C 16 ? ? 112.81 108.50 4.31 0.70 N 50 16 "O4'" B U 13 ? ? "C1'" B U 13 ? ? N1 B U 13 ? ? 114.44 108.50 5.94 0.70 N 51 16 "O4'" B U 15 ? ? "C1'" B U 15 ? ? N1 B U 15 ? ? 113.74 108.50 5.24 0.70 N 52 17 "O4'" B C 11 ? ? "C1'" B C 11 ? ? N1 B C 11 ? ? 114.94 108.50 6.44 0.70 N 53 17 "O4'" B U 13 ? ? "C1'" B U 13 ? ? N1 B U 13 ? ? 114.55 108.50 6.05 0.70 N 54 17 "O4'" B U 15 ? ? "C1'" B U 15 ? ? N1 B U 15 ? ? 113.98 108.50 5.48 0.70 N 55 17 "O4'" B C 16 ? ? "C1'" B C 16 ? ? N1 B C 16 ? ? 113.17 108.50 4.67 0.70 N 56 18 "O4'" B C 11 ? ? "C1'" B C 11 ? ? N1 B C 11 ? ? 114.61 108.50 6.11 0.70 N 57 18 "O4'" B U 13 ? ? "C1'" B U 13 ? ? N1 B U 13 ? ? 114.14 108.50 5.64 0.70 N 58 18 "O4'" B U 15 ? ? "C1'" B U 15 ? ? N1 B U 15 ? ? 114.02 108.50 5.52 0.70 N 59 18 "O4'" B C 16 ? ? "C1'" B C 16 ? ? N1 B C 16 ? ? 113.15 108.50 4.65 0.70 N 60 19 "O4'" B C 11 ? ? "C1'" B C 11 ? ? N1 B C 11 ? ? 115.20 108.50 6.70 0.70 N 61 19 "O4'" B U 13 ? ? "C1'" B U 13 ? ? N1 B U 13 ? ? 114.40 108.50 5.90 0.70 N 62 19 "O4'" B U 15 ? ? "C1'" B U 15 ? ? N1 B U 15 ? ? 113.86 108.50 5.36 0.70 N 63 19 "O4'" B C 16 ? ? "C1'" B C 16 ? ? N1 B C 16 ? ? 113.08 108.50 4.58 0.70 N 64 20 "O4'" B U 13 ? ? "C1'" B U 13 ? ? N1 B U 13 ? ? 114.24 108.50 5.74 0.70 N 65 20 "O4'" B U 15 ? ? "C1'" B U 15 ? ? N1 B U 15 ? ? 114.13 108.50 5.63 0.70 N 66 20 "O4'" B C 16 ? ? "C1'" B C 16 ? ? N1 B C 16 ? ? 113.21 108.50 4.71 0.70 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 2 G B 10 ? ? 0.054 'SIDE CHAIN' 2 3 U B 13 ? ? 0.059 'SIDE CHAIN' 3 7 G B 10 ? ? 0.065 'SIDE CHAIN' 4 7 C B 11 ? ? 0.067 'SIDE CHAIN' 5 7 U B 13 ? ? 0.059 'SIDE CHAIN' 6 8 U B 13 ? ? 0.070 'SIDE CHAIN' 7 20 G B 10 ? ? 0.070 'SIDE CHAIN' 8 20 C B 11 ? ? 0.060 'SIDE CHAIN' # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A TLN 2 A TLN 2 ? DU ? 2 A LCG 3 A LCG 3 ? DG ? 3 A LCA 4 A LCA 4 ? A ? 4 A TLN 5 A TLN 5 ? DU ? 5 A LCA 6 A LCA 6 ? A ? 6 A TLN 7 A TLN 7 ? DU ? 7 A LCG 8 A LCG 8 ? DG ? # _pdbx_entry_details.entry_id 1H0Q _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;LKC IS SIMILAR TO LCC EXCEPT THAT IT DOES NOT HAVE A 5' PHOSPHATE GROUP. ; _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_nmr_ensemble.entry_id 1H0Q _pdbx_nmr_ensemble.conformers_calculated_total_number 20 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria ? # _pdbx_nmr_representative.entry_id 1H0Q _pdbx_nmr_representative.conformer_id 17 _pdbx_nmr_representative.selection_criteria ? # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '2 MM NUCLEIC ACID, 100MM NACL, 10 MM PHOSPHATE BUFFER' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 7 _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 NOESY 1 2 1 DQF-COSY 1 3 1 TOCSY 1 4 1 HSQC 1 # _pdbx_nmr_details.entry_id 1H0Q _pdbx_nmr_details.text 'SEE REFERENCE FOR FURTHER DETAILS' # _pdbx_nmr_refine.entry_id 1H0Q _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details 'REFINEMENT DETAILS CAN BE FOUND IN THE JRNL CITATION ABOVE' _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal refinement Amber ? 'CASE ET AL.' 1 'structure solution' Felix ? ? 2 'structure solution' Amber ? ? 3 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 LCA P P N N 111 LCA O1P O N N 112 LCA "O5'" O N N 113 LCA "C5'" C N N 114 LCA "C3'" C N S 115 LCA "C6'" C N N 116 LCA N9 N Y N 117 LCA C8 C Y N 118 LCA C4 C Y N 119 LCA N7 N Y N 120 LCA C5 C Y N 121 LCA C6 C Y N 122 LCA "C2'" C N R 123 LCA N6 N N N 124 LCA "C4'" C N R 125 LCA "C1'" C N R 126 LCA C2 C Y N 127 LCA N1 N Y N 128 LCA "O4'" O N N 129 LCA O2P O N N 130 LCA N3 N Y N 131 LCA "O3'" O N N 132 LCA OXT O N N 133 LCA "O2'" O N N 134 LCA H1P H N N 135 LCA "H5'1" H N N 136 LCA "H5'2" H N N 137 LCA "H3'" H N N 138 LCA "H6'1" H N N 139 LCA "H6'2" H N N 140 LCA H8 H N N 141 LCA "H2'1" H N N 142 LCA H61 H N N 143 LCA H62 H N N 144 LCA "H1'" H N N 145 LCA H2 H N N 146 LCA HB H N N 147 LCA HA H N N 148 LCC "O5'" O N N 149 LCC "C5'" C N N 150 LCC "C4'" C N R 151 LCC "O4'" O N N 152 LCC "C1'" C N R 153 LCC N1 N N N 154 LCC C6 C N N 155 LCC C5 C N N 156 LCC C5M C N N 157 LCC C4 C N N 158 LCC N4 N N N 159 LCC N3 N N N 160 LCC C2 C N N 161 LCC O2 O N N 162 LCC "C3'" C N S 163 LCC "C2'" C N R 164 LCC "O2'" O N N 165 LCC "O3'" O N N 166 LCC "C6'" C N N 167 LCC P P N N 168 LCC O1P O N N 169 LCC O2P O N N 170 LCC OXT O N N 171 LCC "H5'1" H N N 172 LCC "H5'2" H N N 173 LCC "H1'" H N N 174 LCC H6 H N N 175 LCC H5M1 H N N 176 LCC H5M2 H N N 177 LCC H5M3 H N N 178 LCC H41 H N N 179 LCC H42 H N N 180 LCC "H3'" H N N 181 LCC "H2'1" H N N 182 LCC H3T H N N 183 LCC "H6'1" H N N 184 LCC "H6'2" H N N 185 LCC H1P H N N 186 LCC HXT H N N 187 LCG P P N N 188 LCG OP1 O N N 189 LCG "O5'" O N N 190 LCG "C5'" C N N 191 LCG "C3'" C N S 192 LCG "C6'" C N N 193 LCG N9 N Y N 194 LCG C8 C Y N 195 LCG C4 C Y N 196 LCG N7 N Y N 197 LCG C5 C Y N 198 LCG C6 C N N 199 LCG "C2'" C N R 200 LCG O6 O N N 201 LCG "C4'" C N R 202 LCG "C1'" C N R 203 LCG C2 C N N 204 LCG N1 N N N 205 LCG "O4'" O N N 206 LCG OP2 O N N 207 LCG N2 N N N 208 LCG N3 N N N 209 LCG "O2'" O N N 210 LCG "O3'" O N N 211 LCG OP3 O N N 212 LCG "H5'" H N N 213 LCG "H5''" H N N 214 LCG "H3'" H N N 215 LCG "H6'1" H N N 216 LCG "H6'2" H N N 217 LCG H8 H N N 218 LCG "H2'" H N N 219 LCG "H1'" H N N 220 LCG H1 H N N 221 LCG HOP2 H N N 222 LCG H21 H N N 223 LCG H22 H N N 224 LCG "HO3'" H N N 225 LCG HOP3 H N N 226 LKC N1 N N N 227 LKC C2 C N N 228 LKC N3 N N N 229 LKC C4 C N N 230 LKC C5 C N N 231 LKC C6 C N N 232 LKC O2 O N N 233 LKC N4 N N N 234 LKC "C1'" C N R 235 LKC "C2'" C N R 236 LKC "C3'" C N S 237 LKC "C4'" C N S 238 LKC "O4'" O N N 239 LKC "O3'" O N N 240 LKC "C5'" C N N 241 LKC "O5'" O N N 242 LKC C5A C N N 243 LKC "O2'" O N N 244 LKC "C6'" C N N 245 LKC H6 H N N 246 LKC H41 H N N 247 LKC H42 H N N 248 LKC "H1'" H N N 249 LKC "H2'1" H N N 250 LKC "H3'" H N N 251 LKC H3T H N N 252 LKC "H5'1" H N N 253 LKC "H5'2" H N N 254 LKC H5T H N N 255 LKC H5M1 H N N 256 LKC H5M2 H N N 257 LKC H5M3 H N N 258 LKC "H6'1" H N N 259 LKC "H6'2" H N N 260 TLN P P N N 261 TLN OP1 O N N 262 TLN OP2 O N N 263 TLN OP3 O N N 264 TLN "O5'" O N N 265 TLN "C5'" C N N 266 TLN "C4'" C N R 267 TLN "O4'" O N N 268 TLN "C1'" C N R 269 TLN N1 N N N 270 TLN C6 C N N 271 TLN C5 C N N 272 TLN C5M C N N 273 TLN C4 C N N 274 TLN O4 O N N 275 TLN N3 N N N 276 TLN C2 C N N 277 TLN O2 O N N 278 TLN "C3'" C N S 279 TLN "C2'" C N R 280 TLN "O2'" O N N 281 TLN "O3'" O N N 282 TLN "C6'" C N N 283 TLN HOP2 H N N 284 TLN HOP3 H N N 285 TLN "H5'" H N N 286 TLN "H5''" H N N 287 TLN "H1'" H N N 288 TLN H6 H N N 289 TLN H71 H N N 290 TLN H72 H N N 291 TLN H73 H N N 292 TLN H3 H N N 293 TLN "H3'" H N N 294 TLN "H2'" H N N 295 TLN "HO3'" H N N 296 TLN "H6'1" H N N 297 TLN "H6'2" H N N 298 U OP3 O N N 299 U P P N N 300 U OP1 O N N 301 U OP2 O N N 302 U "O5'" O N N 303 U "C5'" C N N 304 U "C4'" C N R 305 U "O4'" O N N 306 U "C3'" C N S 307 U "O3'" O N N 308 U "C2'" C N R 309 U "O2'" O N N 310 U "C1'" C N R 311 U N1 N N N 312 U C2 C N N 313 U O2 O N N 314 U N3 N N N 315 U C4 C N N 316 U O4 O N N 317 U C5 C N N 318 U C6 C N N 319 U HOP3 H N N 320 U HOP2 H N N 321 U "H5'" H N N 322 U "H5''" H N N 323 U "H4'" H N N 324 U "H3'" H N N 325 U "HO3'" H N N 326 U "H2'" H N N 327 U "HO2'" H N N 328 U "H1'" H N N 329 U H3 H N N 330 U H5 H N N 331 U H6 H N N 332 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 LCA P O1P sing N N 116 LCA P "O5'" sing N N 117 LCA P O2P doub N N 118 LCA P OXT sing N N 119 LCA O1P H1P sing N N 120 LCA "O5'" "C5'" sing N N 121 LCA "C5'" "C4'" sing N N 122 LCA "C5'" "H5'1" sing N N 123 LCA "C5'" "H5'2" sing N N 124 LCA "C3'" "C2'" sing N N 125 LCA "C3'" "C4'" sing N N 126 LCA "C3'" "O3'" sing N N 127 LCA "C3'" "H3'" sing N N 128 LCA "C6'" "C4'" sing N N 129 LCA "C6'" "O2'" sing N N 130 LCA "C6'" "H6'1" sing N N 131 LCA "C6'" "H6'2" sing N N 132 LCA N9 C8 sing Y N 133 LCA N9 C4 sing Y N 134 LCA N9 "C1'" sing N N 135 LCA C8 N7 doub Y N 136 LCA C8 H8 sing N N 137 LCA C4 C5 doub Y N 138 LCA C4 N3 sing Y N 139 LCA N7 C5 sing Y N 140 LCA C5 C6 sing Y N 141 LCA C6 N6 sing N N 142 LCA C6 N1 doub Y N 143 LCA "C2'" "C1'" sing N N 144 LCA "C2'" "O2'" sing N N 145 LCA "C2'" "H2'1" sing N N 146 LCA N6 H61 sing N N 147 LCA N6 H62 sing N N 148 LCA "C4'" "O4'" sing N N 149 LCA "C1'" "O4'" sing N N 150 LCA "C1'" "H1'" sing N N 151 LCA C2 N1 sing Y N 152 LCA C2 N3 doub Y N 153 LCA C2 H2 sing N N 154 LCA "O3'" HB sing N N 155 LCA OXT HA sing N N 156 LCC "O5'" "C5'" sing N N 157 LCC "O5'" P sing N N 158 LCC "C5'" "C4'" sing N N 159 LCC "C5'" "H5'1" sing N N 160 LCC "C5'" "H5'2" sing N N 161 LCC "C4'" "O4'" sing N N 162 LCC "C4'" "C3'" sing N N 163 LCC "C4'" "C6'" sing N N 164 LCC "O4'" "C1'" sing N N 165 LCC "C1'" N1 sing N N 166 LCC "C1'" "C2'" sing N N 167 LCC "C1'" "H1'" sing N N 168 LCC N1 C6 sing N N 169 LCC N1 C2 sing N N 170 LCC C6 C5 doub N N 171 LCC C6 H6 sing N N 172 LCC C5 C5M sing N N 173 LCC C5 C4 sing N N 174 LCC C5M H5M1 sing N N 175 LCC C5M H5M2 sing N N 176 LCC C5M H5M3 sing N N 177 LCC C4 N4 sing N N 178 LCC C4 N3 doub N N 179 LCC N4 H41 sing N N 180 LCC N4 H42 sing N N 181 LCC N3 C2 sing N N 182 LCC C2 O2 doub N N 183 LCC "C3'" "C2'" sing N N 184 LCC "C3'" "O3'" sing N N 185 LCC "C3'" "H3'" sing N N 186 LCC "C2'" "O2'" sing N N 187 LCC "C2'" "H2'1" sing N N 188 LCC "O2'" "C6'" sing N N 189 LCC "O3'" H3T sing N N 190 LCC "C6'" "H6'1" sing N N 191 LCC "C6'" "H6'2" sing N N 192 LCC P O1P sing N N 193 LCC P O2P doub N N 194 LCC P OXT sing N N 195 LCC O1P H1P sing N N 196 LCC OXT HXT sing N N 197 LCG P OP1 doub N N 198 LCG P "O5'" sing N N 199 LCG P OP2 sing N N 200 LCG P OP3 sing N N 201 LCG "O5'" "C5'" sing N N 202 LCG "C5'" "C4'" sing N N 203 LCG "C5'" "H5'" sing N N 204 LCG "C5'" "H5''" sing N N 205 LCG "C3'" "C2'" sing N N 206 LCG "C3'" "C4'" sing N N 207 LCG "C3'" "O3'" sing N N 208 LCG "C3'" "H3'" sing N N 209 LCG "C6'" "C4'" sing N N 210 LCG "C6'" "O2'" sing N N 211 LCG "C6'" "H6'1" sing N N 212 LCG "C6'" "H6'2" sing N N 213 LCG N9 C8 sing Y N 214 LCG N9 C4 sing Y N 215 LCG N9 "C1'" sing N N 216 LCG C8 N7 doub Y N 217 LCG C8 H8 sing N N 218 LCG C4 C5 doub Y N 219 LCG C4 N3 sing N N 220 LCG N7 C5 sing Y N 221 LCG C5 C6 sing N N 222 LCG C6 O6 doub N N 223 LCG C6 N1 sing N N 224 LCG "C2'" "C1'" sing N N 225 LCG "C2'" "O2'" sing N N 226 LCG "C2'" "H2'" sing N N 227 LCG "C4'" "O4'" sing N N 228 LCG "C1'" "O4'" sing N N 229 LCG "C1'" "H1'" sing N N 230 LCG C2 N1 sing N N 231 LCG C2 N2 sing N N 232 LCG C2 N3 doub N N 233 LCG N1 H1 sing N N 234 LCG OP2 HOP2 sing N N 235 LCG N2 H21 sing N N 236 LCG N2 H22 sing N N 237 LCG "O3'" "HO3'" sing N N 238 LCG OP3 HOP3 sing N N 239 LKC N1 C2 sing N N 240 LKC N1 C6 sing N N 241 LKC N1 "C1'" sing N N 242 LKC C2 N3 sing N N 243 LKC C2 O2 doub N N 244 LKC N3 C4 doub N N 245 LKC C4 C5 sing N N 246 LKC C4 N4 sing N N 247 LKC C5 C6 doub N N 248 LKC C5 C5A sing N N 249 LKC C6 H6 sing N N 250 LKC N4 H41 sing N N 251 LKC N4 H42 sing N N 252 LKC "C1'" "C2'" sing N N 253 LKC "C1'" "O4'" sing N N 254 LKC "C1'" "H1'" sing N N 255 LKC "C2'" "C3'" sing N N 256 LKC "C2'" "O2'" sing N N 257 LKC "C2'" "H2'1" sing N N 258 LKC "C3'" "C4'" sing N N 259 LKC "C3'" "O3'" sing N N 260 LKC "C3'" "H3'" sing N N 261 LKC "C4'" "O4'" sing N N 262 LKC "C4'" "C5'" sing N N 263 LKC "C4'" "C6'" sing N N 264 LKC "O3'" H3T sing N N 265 LKC "C5'" "O5'" sing N N 266 LKC "C5'" "H5'1" sing N N 267 LKC "C5'" "H5'2" sing N N 268 LKC "O5'" H5T sing N N 269 LKC C5A H5M1 sing N N 270 LKC C5A H5M2 sing N N 271 LKC C5A H5M3 sing N N 272 LKC "O2'" "C6'" sing N N 273 LKC "C6'" "H6'1" sing N N 274 LKC "C6'" "H6'2" sing N N 275 TLN P OP1 doub N N 276 TLN P OP2 sing N N 277 TLN P OP3 sing N N 278 TLN P "O5'" sing N N 279 TLN OP2 HOP2 sing N N 280 TLN OP3 HOP3 sing N N 281 TLN "O5'" "C5'" sing N N 282 TLN "C5'" "C4'" sing N N 283 TLN "C5'" "H5'" sing N N 284 TLN "C5'" "H5''" sing N N 285 TLN "C4'" "O4'" sing N N 286 TLN "C4'" "C3'" sing N N 287 TLN "C4'" "C6'" sing N N 288 TLN "O4'" "C1'" sing N N 289 TLN "C1'" N1 sing N N 290 TLN "C1'" "C2'" sing N N 291 TLN "C1'" "H1'" sing N N 292 TLN N1 C6 sing N N 293 TLN N1 C2 sing N N 294 TLN C6 C5 doub N N 295 TLN C6 H6 sing N N 296 TLN C5 C5M sing N N 297 TLN C5 C4 sing N N 298 TLN C5M H71 sing N N 299 TLN C5M H72 sing N N 300 TLN C5M H73 sing N N 301 TLN C4 O4 doub N N 302 TLN C4 N3 sing N N 303 TLN N3 C2 sing N N 304 TLN N3 H3 sing N N 305 TLN C2 O2 doub N N 306 TLN "C3'" "C2'" sing N N 307 TLN "C3'" "O3'" sing N N 308 TLN "C3'" "H3'" sing N N 309 TLN "C2'" "O2'" sing N N 310 TLN "C2'" "H2'" sing N N 311 TLN "O2'" "C6'" sing N N 312 TLN "O3'" "HO3'" sing N N 313 TLN "C6'" "H6'1" sing N N 314 TLN "C6'" "H6'2" sing N N 315 U OP3 P sing N N 316 U OP3 HOP3 sing N N 317 U P OP1 doub N N 318 U P OP2 sing N N 319 U P "O5'" sing N N 320 U OP2 HOP2 sing N N 321 U "O5'" "C5'" sing N N 322 U "C5'" "C4'" sing N N 323 U "C5'" "H5'" sing N N 324 U "C5'" "H5''" sing N N 325 U "C4'" "O4'" sing N N 326 U "C4'" "C3'" sing N N 327 U "C4'" "H4'" sing N N 328 U "O4'" "C1'" sing N N 329 U "C3'" "O3'" sing N N 330 U "C3'" "C2'" sing N N 331 U "C3'" "H3'" sing N N 332 U "O3'" "HO3'" sing N N 333 U "C2'" "O2'" sing N N 334 U "C2'" "C1'" sing N N 335 U "C2'" "H2'" sing N N 336 U "O2'" "HO2'" sing N N 337 U "C1'" N1 sing N N 338 U "C1'" "H1'" sing N N 339 U N1 C2 sing N N 340 U N1 C6 sing N N 341 U C2 O2 doub N N 342 U C2 N3 sing N N 343 U N3 C4 sing N N 344 U N3 H3 sing N N 345 U C4 O4 doub N N 346 U C4 C5 sing N N 347 U C5 C6 doub N N 348 U C5 H5 sing N N 349 U C6 H6 sing N N 350 # _ndb_struct_conf_na.entry_id 1H0Q _ndb_struct_conf_na.feature 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A TLN 2 1_555 B A 8 1_555 -0.037 0.099 0.219 -1.268 -11.249 -1.616 1 A_TLN2:A17_B A 2 ? B 17 ? 20 1 1 A LCG 3 1_555 B C 7 1_555 -0.503 -0.035 0.087 -9.149 -14.234 -1.942 2 A_LCG3:C16_B A 3 ? B 16 ? 19 1 1 A LCA 4 1_555 B U 6 1_555 -0.326 -0.001 0.412 -4.019 -12.639 -3.969 3 A_LCA4:U15_B A 4 ? B 15 ? 20 1 1 A TLN 5 1_555 B A 5 1_555 0.083 0.100 0.277 -3.311 -14.070 -8.329 4 A_TLN5:A14_B A 5 ? B 14 ? 20 1 1 A LCA 6 1_555 B U 4 1_555 -0.447 0.002 0.276 -8.764 -21.218 -11.810 5 A_LCA6:U13_B A 6 ? B 13 ? 20 1 1 A TLN 7 1_555 B A 3 1_555 -0.210 0.139 0.403 -2.860 -11.413 -6.899 6 A_TLN7:A12_B A 7 ? B 12 ? 20 1 1 A LCG 8 1_555 B C 2 1_555 -0.172 0.038 -0.017 -3.148 -8.438 -3.271 7 A_LCG8:C11_B A 8 ? B 11 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A TLN 2 1_555 B A 8 1_555 A LCG 3 1_555 B C 7 1_555 0.720 -2.323 3.224 3.977 11.478 27.118 -6.623 -0.684 2.165 23.066 -7.992 29.668 1 AA_TLN2LCG3:C16A17_BB A 2 ? B 17 ? A 3 ? B 16 ? 1 A LCG 3 1_555 B C 7 1_555 A LCA 4 1_555 B U 6 1_555 0.237 -2.172 2.999 -0.626 5.259 31.030 -4.852 -0.538 2.599 9.741 1.159 31.468 2 AA_LCG3LCA4:U15C16_BB A 3 ? B 16 ? A 4 ? B 15 ? 1 A LCA 4 1_555 B U 6 1_555 A TLN 5 1_555 B A 5 1_555 0.075 -2.182 3.229 3.347 2.197 29.431 -4.703 0.532 3.051 4.298 -6.549 29.696 3 AA_LCA4TLN5:A14U15_BB A 4 ? B 15 ? A 5 ? B 14 ? 1 A TLN 5 1_555 B A 5 1_555 A LCA 6 1_555 B U 4 1_555 0.507 -2.243 3.094 3.379 17.675 30.493 -5.741 -0.446 1.635 30.500 -5.832 35.298 4 AA_TLN5LCA6:U13A14_BB A 5 ? B 14 ? A 6 ? B 13 ? 1 A LCA 6 1_555 B U 4 1_555 A TLN 7 1_555 B A 3 1_555 0.792 -1.896 3.169 1.168 -1.538 30.701 -3.277 -1.268 3.285 -2.901 -2.203 30.760 5 AA_LCA6TLN7:A12U13_BB A 6 ? B 13 ? A 7 ? B 12 ? 1 A TLN 7 1_555 B A 3 1_555 A LCG 8 1_555 B C 2 1_555 0.849 -2.165 3.174 3.271 5.740 29.210 -5.286 -1.021 2.784 11.201 -6.384 29.932 6 AA_TLN7LCG8:C11A12_BB A 7 ? B 12 ? A 8 ? B 11 ? # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model INOVA _pdbx_nmr_spectrometer.manufacturer Varian _pdbx_nmr_spectrometer.field_strength 800 # _atom_sites.entry_id 1H0Q _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_