HEADER OXIDOREDUCTASE 17-OCT-97 1H2A TITLE SINGLE CRYSTALS OF HYDROGENASE FROM DESULFOVIBRIO VULGARIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYDROGENASE; COMPND 3 CHAIN: S; COMPND 4 SYNONYM: HYDROGEN\: FERRICYTOCHROME-C3 OXIDOREDUCTASE; COMPND 5 EC: 1.18.99.1; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: HYDROGENASE; COMPND 8 CHAIN: L; COMPND 9 SYNONYM: HYDROGEN\: FERRICYTOCHROME-C3 OXIDOREDUCTASE; COMPND 10 EC: 1.18.99.1 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DESULFOVIBRIO VULGARIS STR. 'MIYAZAKI F'; SOURCE 3 ORGANISM_TAXID: 883; SOURCE 4 STRAIN: MIYAZAKI F; SOURCE 5 OTHER_DETAILS: IAM 12604; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: DESULFOVIBRIO VULGARIS STR. 'MIYAZAKI F'; SOURCE 8 ORGANISM_TAXID: 883; SOURCE 9 STRAIN: MIYAZAKI F; SOURCE 10 OTHER_DETAILS: IAM 12604 KEYWDS NI-FE HYDROGENASE, SO LIGAND, HYDROGEN METABOLISM, MG CENTER, MIR, KEYWDS 2 MAD, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.HIGUCHI,N.YASUOKA REVDAT 5 07-FEB-24 1H2A 1 REMARK LINK REVDAT 4 24-MAR-09 1H2A 1 ATOM CONECT REVDAT 3 24-FEB-09 1H2A 1 VERSN REVDAT 2 23-MAR-99 1H2A 1 COMPND REMARK HEADER SOURCE REVDAT 2 2 1 FORMUL KEYWDS REVDAT 1 09-FEB-99 1H2A 0 JRNL AUTH Y.HIGUCHI,T.YAGI,N.YASUOKA JRNL TITL UNUSUAL LIGAND STRUCTURE IN NI-FE ACTIVE CENTER AND AN JRNL TITL 2 ADDITIONAL MG SITE IN HYDROGENASE REVEALED BY HIGH JRNL TITL 3 RESOLUTION X-RAY STRUCTURE ANALYSIS. JRNL REF STRUCTURE V. 5 1671 1997 JRNL REFN ISSN 0969-2126 JRNL PMID 9438867 JRNL DOI 10.1016/S0969-2126(97)00313-4 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH Y.HIGUCHI,T.OKAMOTO,K.FUJIMOTO,S.MISAKI,Y.MORIMOTO,N.YASOUKA REMARK 1 TITL LOCATION OF ACTIVE SITES OF NIFE HYDROGENASE DETERMINED BY REMARK 1 TITL 2 THE COMBINATION OF MULTIPLE ISOMORPHOUS REPLACEMENT AND REMARK 1 TITL 3 MULTIWAVELENGTH ANOMALOUS-DIFFRACTION METHODS REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 50 781 1994 REMARK 1 REFN ISSN 0907-4449 REMARK 1 REFERENCE 2 REMARK 1 AUTH Y.HIGUCHI,N.YASUOKA,M.KAKUDO,Y.KATSUBE,T.YAGI,H.INOKUCHI REMARK 1 TITL SINGLE CRYSTALS OF HYDROGENASE FROM DESULFOVIBRIO VULGARIS REMARK 1 TITL 2 MIYAZAKI F REMARK 1 REF J.BIOL.CHEM. V. 262 2823 1987 REMARK 1 REFN ISSN 0021-9258 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 73.7 REMARK 3 NUMBER OF REFLECTIONS : 57233 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.278 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4016 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6193 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 638 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.30 REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.012 REMARK 3 BOND ANGLES (DEGREES) : 2.100 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : 1.440 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1H2A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000173735. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 280 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : WEIS REMARK 200 DATA SCALING SOFTWARE : FSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 251414 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 81.3 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.10500 REMARK 200 R SYM (I) : 0.04100 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 46.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR AND MAD REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 7.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 50.75000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.25500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 63.25000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 33.25500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 50.75000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 63.25000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -110.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: S, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET S -49 REMARK 465 LYS S -48 REMARK 465 ILE S -47 REMARK 465 SER S -46 REMARK 465 ILE S -45 REMARK 465 GLY S -44 REMARK 465 LEU S -43 REMARK 465 GLY S -42 REMARK 465 LYS S -41 REMARK 465 GLU S -40 REMARK 465 GLY S -39 REMARK 465 VAL S -38 REMARK 465 GLU S -37 REMARK 465 GLU S -36 REMARK 465 ARG S -35 REMARK 465 LEU S -34 REMARK 465 ALA S -33 REMARK 465 GLU S -32 REMARK 465 ARG S -31 REMARK 465 GLY S -30 REMARK 465 VAL S -29 REMARK 465 SER S -28 REMARK 465 ARG S -27 REMARK 465 ARG S -26 REMARK 465 ASP S -25 REMARK 465 PHE S -24 REMARK 465 LEU S -23 REMARK 465 LYS S -22 REMARK 465 PHE S -21 REMARK 465 CYS S -20 REMARK 465 THR S -19 REMARK 465 ALA S -18 REMARK 465 ILE S -17 REMARK 465 ALA S -16 REMARK 465 VAL S -15 REMARK 465 THR S -14 REMARK 465 MET S -13 REMARK 465 GLY S -12 REMARK 465 MET S -11 REMARK 465 GLY S -10 REMARK 465 PRO S -9 REMARK 465 ALA S -8 REMARK 465 PHE S -7 REMARK 465 ALA S -6 REMARK 465 PRO S -5 REMARK 465 GLU S -4 REMARK 465 VAL S -3 REMARK 465 ALA S -2 REMARK 465 ARG S -1 REMARK 465 ALA S 0 REMARK 465 MET L 1 REMARK 465 SER L 2 REMARK 465 GLY L 3 REMARK 465 CYS L 4 REMARK 465 ARG L 5 REMARK 465 ALA L 6 REMARK 465 GLN L 7 REMARK 465 ASN L 8 REMARK 465 ALA L 9 REMARK 465 PRO L 10 REMARK 465 GLY L 11 REMARK 465 GLY L 12 REMARK 465 ILE L 13 REMARK 465 PRO L 14 REMARK 465 VAL L 15 REMARK 465 THR L 16 REMARK 465 PRO L 17 REMARK 465 LYS L 18 REMARK 465 VAL L 553 REMARK 465 ILE L 554 REMARK 465 ASP L 555 REMARK 465 GLY L 556 REMARK 465 HIS L 557 REMARK 465 THR L 558 REMARK 465 ASN L 559 REMARK 465 GLU L 560 REMARK 465 VAL L 561 REMARK 465 HIS L 562 REMARK 465 LYS L 563 REMARK 465 PHE L 564 REMARK 465 ARG L 565 REMARK 465 ILE L 566 REMARK 465 LEU L 567 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG S 5 -78.99 55.62 REMARK 500 ASN S 14 -120.92 -96.26 REMARK 500 THR S 18 -1.33 72.17 REMARK 500 GLU S 29 76.15 52.02 REMARK 500 HIS S 45 98.89 -169.42 REMARK 500 ALA S 81 153.53 -37.72 REMARK 500 ASN S 83 38.75 70.33 REMARK 500 ILE S 147 76.84 59.79 REMARK 500 PRO S 171 -72.61 -65.50 REMARK 500 GLU S 172 125.21 177.90 REMARK 500 ASN S 177 37.25 73.28 REMARK 500 LYS S 235 177.25 58.12 REMARK 500 THR S 239 -39.50 -150.74 REMARK 500 PRO S 242 -75.11 -21.88 REMARK 500 PRO S 255 -87.69 -32.05 REMARK 500 ASP S 256 49.73 -100.96 REMARK 500 LEU L 134 -5.69 -58.62 REMARK 500 THR L 187 -79.37 -33.02 REMARK 500 HIS L 235 83.75 64.93 REMARK 500 PHE L 238 -12.97 -140.88 REMARK 500 PHE L 302 73.54 63.09 REMARK 500 ASN L 326 64.80 -107.47 REMARK 500 ALA L 347 28.66 -143.95 REMARK 500 LYS L 360 88.18 -154.66 REMARK 500 THR L 362 -146.43 -95.34 REMARK 500 LEU L 364 106.21 -51.95 REMARK 500 TYR L 370 22.11 -144.05 REMARK 500 TYR L 378 -80.50 -82.62 REMARK 500 MET L 379 53.05 -111.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 S1001 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS S 17 SG REMARK 620 2 SF4 S1001 S2 112.1 REMARK 620 3 SF4 S1001 S3 110.6 108.7 REMARK 620 4 SF4 S1001 S4 106.0 114.0 105.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 S1001 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS S 20 SG REMARK 620 2 SF4 S1001 S1 109.6 REMARK 620 3 SF4 S1001 S2 112.0 105.4 REMARK 620 4 SF4 S1001 S3 110.4 111.3 108.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 S1001 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS S 114 SG REMARK 620 2 SF4 S1001 S1 107.9 REMARK 620 3 SF4 S1001 S3 125.9 111.7 REMARK 620 4 SF4 S1001 S4 97.7 109.5 102.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 S1001 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS S 150 SG REMARK 620 2 SF4 S1001 S1 98.3 REMARK 620 3 SF4 S1001 S2 116.4 108.3 REMARK 620 4 SF4 S1001 S4 110.8 107.4 114.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 S1002 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS S 188 ND1 REMARK 620 2 SF4 S1002 S2 100.6 REMARK 620 3 SF4 S1002 S3 118.4 105.5 REMARK 620 4 SF4 S1002 S4 113.5 105.6 111.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 S1002 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS S 191 SG REMARK 620 2 SF4 S1002 S1 115.9 REMARK 620 3 SF4 S1002 S2 119.6 111.3 REMARK 620 4 SF4 S1002 S4 98.9 99.7 108.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 S1002 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS S 216 SG REMARK 620 2 SF4 S1002 S1 120.6 REMARK 620 3 SF4 S1002 S2 111.9 113.3 REMARK 620 4 SF4 S1002 S3 92.4 109.1 106.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 S1002 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS S 222 SG REMARK 620 2 SF4 S1002 S1 106.5 REMARK 620 3 SF4 S1002 S3 114.0 109.3 REMARK 620 4 SF4 S1002 S4 110.0 102.3 113.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 F3S S1003 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS S 231 SG REMARK 620 2 F3S S1003 S1 111.4 REMARK 620 3 F3S S1003 S3 113.7 108.8 REMARK 620 4 F3S S1003 S4 106.2 110.0 106.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 F3S S1003 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS S 249 SG REMARK 620 2 F3S S1003 S1 111.7 REMARK 620 3 F3S S1003 S2 102.5 102.5 REMARK 620 4 F3S S1003 S3 114.2 117.4 106.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 F3S S1003 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS S 252 SG REMARK 620 2 F3S S1003 S2 117.2 REMARK 620 3 F3S S1003 S3 112.7 103.9 REMARK 620 4 F3S S1003 S4 105.0 108.5 109.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG L1005 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU L 62 OE2 REMARK 620 2 LEU L 498 O 98.4 REMARK 620 3 HIS L 552 NE2 89.3 87.4 REMARK 620 4 HOH L3001 O 85.5 91.1 174.3 REMARK 620 5 HOH L3002 O 172.8 84.8 97.3 88.0 REMARK 620 6 HOH L3003 O 86.2 175.1 91.2 90.7 90.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NFE L1004 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS L 81 SG REMARK 620 2 NFE L1004 S4 153.2 REMARK 620 3 CYS L 84 SG 99.1 94.6 REMARK 620 4 CYS L 546 SG 94.8 70.5 165.1 REMARK 620 5 CYS L 549 SG 113.2 91.1 83.3 96.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NFE L1004 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS L 84 SG REMARK 620 2 NFE L1004 C1 102.9 REMARK 620 3 NFE L1004 C2 95.5 85.5 REMARK 620 4 NFE L1004 S3 174.5 82.6 85.0 REMARK 620 5 NFE L1004 S4 99.8 157.0 95.4 74.7 REMARK 620 6 CYS L 549 SG 88.7 87.8 172.8 91.4 89.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG L 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SF4 S 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SF4 S 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE F3S S 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NFE L 1004 DBREF 1H2A S -49 267 UNP P21853 PHNS_DESVM 1 317 DBREF 1H2A L 1 567 UNP P21852 PHNL_DESVM 1 567 SEQRES 1 S 317 MET LYS ILE SER ILE GLY LEU GLY LYS GLU GLY VAL GLU SEQRES 2 S 317 GLU ARG LEU ALA GLU ARG GLY VAL SER ARG ARG ASP PHE SEQRES 3 S 317 LEU LYS PHE CYS THR ALA ILE ALA VAL THR MET GLY MET SEQRES 4 S 317 GLY PRO ALA PHE ALA PRO GLU VAL ALA ARG ALA LEU MET SEQRES 5 S 317 GLY PRO ARG ARG PRO SER VAL VAL TYR LEU HIS ASN ALA SEQRES 6 S 317 GLU CYS THR GLY CYS SER GLU SER VAL LEU ARG ALA PHE SEQRES 7 S 317 GLU PRO TYR ILE ASP THR LEU ILE LEU ASP THR LEU SER SEQRES 8 S 317 LEU ASP TYR HIS GLU THR ILE MET ALA ALA ALA GLY ASP SEQRES 9 S 317 ALA ALA GLU ALA ALA LEU GLU GLN ALA VAL ASN SER PRO SEQRES 10 S 317 HIS GLY PHE ILE ALA VAL VAL GLU GLY GLY ILE PRO THR SEQRES 11 S 317 ALA ALA ASN GLY ILE TYR GLY LYS VAL ALA ASN HIS THR SEQRES 12 S 317 MET LEU ASP ILE CYS SER ARG ILE LEU PRO LYS ALA GLN SEQRES 13 S 317 ALA VAL ILE ALA TYR GLY THR CYS ALA THR PHE GLY GLY SEQRES 14 S 317 VAL GLN ALA ALA LYS PRO ASN PRO THR GLY ALA LYS GLY SEQRES 15 S 317 VAL ASN ASP ALA LEU LYS HIS LEU GLY VAL LYS ALA ILE SEQRES 16 S 317 ASN ILE ALA GLY CYS PRO PRO ASN PRO TYR ASN LEU VAL SEQRES 17 S 317 GLY THR ILE VAL TYR TYR LEU LYS ASN LYS ALA ALA PRO SEQRES 18 S 317 GLU LEU ASP SER LEU ASN ARG PRO THR MET PHE PHE GLY SEQRES 19 S 317 GLN THR VAL HIS GLU GLN CYS PRO ARG LEU PRO HIS PHE SEQRES 20 S 317 ASP ALA GLY GLU PHE ALA PRO SER PHE GLU SER GLU GLU SEQRES 21 S 317 ALA ARG LYS GLY TRP CYS LEU TYR GLU LEU GLY CYS LYS SEQRES 22 S 317 GLY PRO VAL THR MET ASN ASN CYS PRO LYS ILE LYS PHE SEQRES 23 S 317 ASN GLN THR ASN TRP PRO VAL ASP ALA GLY HIS PRO CYS SEQRES 24 S 317 ILE GLY CYS SER GLU PRO ASP PHE TRP ASP ALA MET THR SEQRES 25 S 317 PRO PHE TYR GLN ASN SEQRES 1 L 567 MET SER GLY CYS ARG ALA GLN ASN ALA PRO GLY GLY ILE SEQRES 2 L 567 PRO VAL THR PRO LYS SER SER TYR SER GLY PRO ILE VAL SEQRES 3 L 567 VAL ASP PRO VAL THR ARG ILE GLU GLY HIS LEU ARG ILE SEQRES 4 L 567 GLU VAL GLU VAL GLU ASN GLY LYS VAL LYS ASN ALA TYR SEQRES 5 L 567 SER SER SER THR LEU PHE ARG GLY LEU GLU ILE ILE LEU SEQRES 6 L 567 LYS GLY ARG ASP PRO ARG ASP ALA GLN HIS PHE THR GLN SEQRES 7 L 567 ARG THR CYS GLY VAL CYS THR TYR THR HIS ALA LEU ALA SEQRES 8 L 567 SER THR ARG CYS VAL ASP ASN ALA VAL GLY VAL HIS ILE SEQRES 9 L 567 PRO LYS ASN ALA THR TYR ILE ARG ASN LEU VAL LEU GLY SEQRES 10 L 567 ALA GLN TYR LEU HIS ASP HIS ILE VAL HIS PHE TYR HIS SEQRES 11 L 567 LEU HIS ALA LEU ASP PHE VAL ASP VAL THR ALA ALA LEU SEQRES 12 L 567 LYS ALA ASP PRO ALA LYS ALA ALA LYS VAL ALA SER SER SEQRES 13 L 567 ILE SER PRO ARG LYS THR THR ALA ALA ASP LEU LYS ALA SEQRES 14 L 567 VAL GLN ASP LYS LEU LYS THR PHE VAL GLU THR GLY GLN SEQRES 15 L 567 LEU GLY PRO PHE THR ASN ALA TYR PHE LEU GLY GLY HIS SEQRES 16 L 567 PRO ALA TYR TYR LEU ASP PRO GLU THR ASN LEU ILE ALA SEQRES 17 L 567 THR ALA HIS TYR LEU GLU ALA LEU ARG LEU GLN VAL LYS SEQRES 18 L 567 ALA ALA ARG ALA MET ALA VAL PHE GLY ALA LYS ASN PRO SEQRES 19 L 567 HIS THR GLN PHE THR VAL VAL GLY GLY VAL THR CYS TYR SEQRES 20 L 567 ASP ALA LEU THR PRO GLN ARG ILE ALA GLU PHE GLU ALA SEQRES 21 L 567 LEU TRP LYS GLU THR LYS ALA PHE VAL ASP GLU VAL TYR SEQRES 22 L 567 ILE PRO ASP LEU LEU VAL VAL ALA ALA ALA TYR LYS ASP SEQRES 23 L 567 TRP THR GLN TYR GLY GLY THR ASP ASN PHE ILE THR PHE SEQRES 24 L 567 GLY GLU PHE PRO LYS ASP GLU TYR ASP LEU ASN SER ARG SEQRES 25 L 567 PHE PHE LYS PRO GLY VAL VAL PHE LYS ARG ASP PHE LYS SEQRES 26 L 567 ASN ILE LYS PRO PHE ASP LYS MET GLN ILE GLU GLU HIS SEQRES 27 L 567 VAL ARG HIS SER TRP TYR GLU GLY ALA GLU ALA ARG HIS SEQRES 28 L 567 PRO TRP LYS GLY GLN THR GLN PRO LYS TYR THR ASP LEU SEQRES 29 L 567 HIS GLY ASP ASP ARG TYR SER TRP MET LYS ALA PRO ARG SEQRES 30 L 567 TYR MET GLY GLU PRO MET GLU THR GLY PRO LEU ALA GLN SEQRES 31 L 567 VAL LEU ILE ALA TYR SER GLN GLY HIS PRO LYS VAL LYS SEQRES 32 L 567 ALA VAL THR ASP ALA VAL LEU ALA LYS LEU GLY VAL GLY SEQRES 33 L 567 PRO GLU ALA LEU PHE SER THR LEU GLY ARG THR ALA ALA SEQRES 34 L 567 ARG GLY ILE GLU THR ALA VAL ILE ALA GLU TYR VAL GLY SEQRES 35 L 567 VAL MET LEU GLN GLU TYR LYS ASP ASN ILE ALA LYS GLY SEQRES 36 L 567 ASP ASN VAL ILE CYS ALA PRO TRP GLU MET PRO LYS GLN SEQRES 37 L 567 ALA GLU GLY VAL GLY PHE VAL ASN ALA PRO ARG GLY GLY SEQRES 38 L 567 LEU SER HIS TRP ILE ARG ILE GLU ASP GLY LYS ILE GLY SEQRES 39 L 567 ASN PHE GLN LEU VAL VAL PRO SER THR TRP THR LEU GLY SEQRES 40 L 567 PRO ARG CYS ASP LYS ASN ASN VAL SER PRO VAL GLU ALA SEQRES 41 L 567 SER LEU ILE GLY THR PRO VAL ALA ASP ALA LYS ARG PRO SEQRES 42 L 567 VAL GLU ILE LEU ARG THR VAL HIS SER PHE ASP PRO CYS SEQRES 43 L 567 ILE ALA CYS GLY VAL HIS VAL ILE ASP GLY HIS THR ASN SEQRES 44 L 567 GLU VAL HIS LYS PHE ARG ILE LEU HET SF4 S1001 8 HET SF4 S1002 8 HET F3S S1003 7 HET MG L1005 1 HET NFE L1004 9 HETNAM SF4 IRON/SULFUR CLUSTER HETNAM F3S FE3-S4 CLUSTER HETNAM MG MAGNESIUM ION HETNAM NFE NI-FE ACTIVE CENTER FORMUL 3 SF4 2(FE4 S4) FORMUL 5 F3S FE3 S4 FORMUL 6 MG MG 2+ FORMUL 7 NFE C2 H FE NI O3 S2 FORMUL 8 HOH *638(H2 O) HELIX 1 1 GLY S 19 ARG S 26 1 8 HELIX 2 2 ILE S 32 LEU S 37 1 6 HELIX 3 3 GLY S 53 VAL S 64 1 12 HELIX 4 4 ALA S 81 GLY S 84 5 4 HELIX 5 5 MET S 94 LYS S 104 1 11 HELIX 6 6 THR S 113 PHE S 117 1 5 HELIX 7 7 VAL S 120 ALA S 122 5 3 HELIX 8 8 VAL S 133 LEU S 140 1 8 HELIX 9 9 PRO S 154 LEU S 165 1 12 HELIX 10 10 THR S 180 PHE S 183 1 4 HELIX 11 11 VAL S 187 GLN S 190 5 4 HELIX 12 12 PRO S 192 ALA S 199 5 8 HELIX 13 13 GLU S 209 ARG S 212 1 4 HELIX 14 14 TYR S 218 LEU S 220 5 3 HELIX 15 15 LYS S 223 VAL S 226 5 4 HELIX 16 16 CYS S 231 ILE S 234 1 4 HELIX 17 17 PRO S 242 ALA S 245 5 4 HELIX 18 18 PHE S 257 ALA S 260 1 4 HELIX 19 19 LEU L 61 LEU L 65 1 5 HELIX 20 20 PRO L 70 THR L 80 5 11 HELIX 21 21 THR L 87 VAL L 100 1 14 HELIX 22 22 LYS L 106 HIS L 130 1 25 HELIX 23 23 ALA L 133 ASP L 135 5 3 HELIX 24 24 ALA L 141 LYS L 144 5 4 HELIX 25 25 PRO L 147 SER L 156 1 10 HELIX 26 26 ALA L 164 THR L 180 1 17 HELIX 27 27 GLY L 184 PHE L 186 5 3 HELIX 28 28 PRO L 202 PHE L 229 1 28 HELIX 29 29 TYR L 247 LEU L 250 5 4 HELIX 30 30 PRO L 252 GLU L 271 1 20 HELIX 31 31 TYR L 273 ALA L 283 1 11 HELIX 32 32 LYS L 285 THR L 288 5 4 HELIX 33 33 LEU L 309 SER L 311 5 3 HELIX 34 34 PRO L 352 LYS L 354 5 3 HELIX 35 35 GLY L 366 ASP L 368 5 3 HELIX 36 36 PRO L 387 SER L 396 1 10 HELIX 37 37 PRO L 400 LEU L 413 1 14 HELIX 38 38 PRO L 417 LEU L 420 5 4 HELIX 39 39 THR L 423 ALA L 453 1 31 HELIX 40 40 PRO L 501 LEU L 506 1 6 HELIX 41 41 PRO L 517 LEU L 522 1 6 HELIX 42 42 VAL L 534 PHE L 543 1 10 HELIX 43 43 ILE L 547 GLY L 550 1 4 SHEET 1 A 4 ALA S 107 TYR S 111 0 SHEET 2 A 4 ILE S 71 GLU S 75 1 N ALA S 72 O ALA S 107 SHEET 3 A 4 PRO S 7 HIS S 13 1 N VAL S 10 O ILE S 71 SHEET 4 A 4 LEU S 40 TYR S 44 1 N SER S 41 O PRO S 7 SHEET 1 B 3 GLY L 23 VAL L 27 0 SHEET 2 B 3 LEU L 37 GLU L 44 -1 N VAL L 43 O GLY L 23 SHEET 3 B 3 LYS L 47 SER L 55 -1 N SER L 54 O ARG L 38 SHEET 1 C 2 PHE L 296 THR L 298 0 SHEET 2 C 2 GLY L 317 VAL L 319 -1 N VAL L 319 O PHE L 296 SHEET 1 D 2 GLU L 336 HIS L 338 0 SHEET 2 D 2 ALA L 375 ARG L 377 -1 N ARG L 377 O GLU L 336 SHEET 1 E 3 GLN L 468 ALA L 477 0 SHEET 2 E 3 GLY L 480 GLU L 489 -1 N ILE L 488 O ALA L 469 SHEET 3 E 3 LYS L 492 VAL L 499 -1 N VAL L 499 O SER L 483 LINK SG CYS S 17 FE1 SF4 S1001 1555 1555 2.19 LINK SG CYS S 20 FE4 SF4 S1001 1555 1555 2.32 LINK SG CYS S 114 FE2 SF4 S1001 1555 1555 2.36 LINK SG CYS S 150 FE3 SF4 S1001 1555 1555 2.32 LINK ND1 HIS S 188 FE1 SF4 S1002 1555 1555 2.01 LINK SG CYS S 191 FE3 SF4 S1002 1555 1555 2.34 LINK SG CYS S 216 FE4 SF4 S1002 1555 1555 2.29 LINK SG CYS S 222 FE2 SF4 S1002 1555 1555 2.22 LINK SG CYS S 231 FE3 F3S S1003 1555 1555 2.32 LINK SG CYS S 249 FE1 F3S S1003 1555 1555 2.29 LINK SG CYS S 252 FE4 F3S S1003 1555 1555 2.25 LINK OE2 GLU L 62 MG MG L1005 1555 1555 2.21 LINK SG CYS L 81 NI NFE L1004 1555 1555 2.22 LINK SG CYS L 84 NI NFE L1004 1555 1555 2.38 LINK SG CYS L 84 FE NFE L1004 1555 1555 2.14 LINK O LEU L 498 MG MG L1005 1555 1555 2.23 LINK SG CYS L 546 NI NFE L1004 1555 1555 2.33 LINK SG CYS L 549 NI NFE L1004 1555 1555 2.37 LINK SG CYS L 549 FE NFE L1004 1555 1555 2.37 LINK NE2 HIS L 552 MG MG L1005 1555 1555 2.24 LINK MG MG L1005 O HOH L3001 1555 1555 2.11 LINK MG MG L1005 O HOH L3002 1555 1555 2.11 LINK MG MG L1005 O HOH L3003 1555 1555 2.09 CISPEP 1 GLU S 29 PRO S 30 0 0.45 CISPEP 2 LYS S 124 PRO S 125 0 0.10 CISPEP 3 CYS S 150 PRO S 151 0 -0.04 CISPEP 4 THR S 262 PRO S 263 0 -0.19 CISPEP 5 ASP L 28 PRO L 29 0 0.42 CISPEP 6 ASN L 233 PRO L 234 0 -0.01 SITE 1 AC1 6 GLU L 62 LEU L 498 HIS L 552 HOH L3001 SITE 2 AC1 6 HOH L3002 HOH L3003 SITE 1 AC2 9 HIS L 235 GLU S 16 CYS S 17 CYS S 20 SITE 2 AC2 9 GLU S 75 THR S 113 CYS S 114 CYS S 150 SITE 3 AC2 9 PRO S 151 SITE 1 AC3 5 HIS S 188 CYS S 191 CYS S 216 LEU S 217 SITE 2 AC3 5 CYS S 222 SITE 1 AC4 7 GLN L 237 CYS S 231 TRP S 241 PRO S 242 SITE 2 AC4 7 CYS S 249 ILE S 250 CYS S 252 SITE 1 AC5 10 CYS L 81 CYS L 84 HIS L 88 ALA L 477 SITE 2 AC5 10 ARG L 479 LEU L 482 PRO L 501 SER L 502 SITE 3 AC5 10 CYS L 546 CYS L 549 CRYST1 101.500 126.500 66.510 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009852 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007905 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015035 0.00000