HEADER ALLERGEN 12-AUG-02 1H2O TITLE SOLUTION STRUCTURE OF THE MAJOR CHERRY ALLERGEN PRU AV 1 MUTANT E45W COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAJOR ALLERGEN PRU AV 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PRU A 1; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 OTHER_DETAILS: ENGINEERED MUTATION GLU 45 TRP SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PRUNUS AVIUM; SOURCE 3 ORGANISM_COMMON: SWEET CHERRY; SOURCE 4 ORGANISM_TAXID: 42229; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET11A KEYWDS ALLERGEN, MAJOR CHERRY ALLERGEN, PATHOGENESIS-RELATED PROTEIN, KEYWDS 2 HETERONUCLEAR NMR, PLANT DEFENSE EXPDTA SOLUTION NMR NUMMDL 24 AUTHOR P.NEUDECKER,K.LEHMANN,J.NERKAMP,K.SCHWEIMER,H.STICHT,M.BOEHM, AUTHOR 2 S.SCHEURER,S.VIETHS,P.ROESCH REVDAT 5 15-MAY-24 1H2O 1 REMARK REVDAT 4 24-FEB-09 1H2O 1 VERSN REVDAT 3 05-JAN-04 1H2O 1 JRNL REVDAT 2 05-SEP-03 1H2O 1 SHEET REVDAT 1 28-AUG-03 1H2O 0 JRNL AUTH P.NEUDECKER,K.LEHMANN,J.NERKAMP,T.HAASE,A.WANGORSCH, JRNL AUTH 2 K.FOTISCH,S.HOFFMANN,P.ROESCH,S.VIETHS,S.SCHEURER JRNL TITL MUTATIONAL EPITOPE ANALYSIS OF PRU AV 1 AND API G 1, THE JRNL TITL 2 MAJOR ALLERGENS OF CHERRY (PRUNUS AVIUM) AND CELERY (APIUM JRNL TITL 3 GRAVEOLENS): CORRELATING IGE REACTIVITY WITH JRNL TITL 4 THREE-DIMENSIONAL STRUCTURE JRNL REF BIOCHEM.J. V. 376 97 2003 JRNL REFN ISSN 0264-6021 JRNL PMID 12943529 JRNL DOI 10.1042/BJ20031057 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.NEUDECKER,K.SCHWEIMER,J.NERKAMP,S.SCHEURER,S.VIETHS, REMARK 1 AUTH 2 H.STICHT,P.ROESCH REMARK 1 TITL ALLERGIC CROSS-REACTIVITY MADE VISIBLE: SOLUTION STRUCTURE REMARK 1 TITL 2 OF THE MAJOR CHERRY ALLERGEN PRU AV 1 REMARK 1 REF J.BIOL.CHEM. V. 276 22756 2001 REMARK 1 REFN ISSN 0021-9258 REMARK 1 PMID 11287426 REMARK 1 DOI 10.1074/JBC.M101657200 REMARK 1 REFERENCE 2 REMARK 1 AUTH P.NEUDECKER,H.STICHT,P.ROESCH REMARK 1 TITL IMPROVING THE EFFICIENCY OF THE GAUSSIAN CONFORMATIONAL REMARK 1 TITL 2 DATABASE POTENTIAL FOR THE REFINEMENT OF PROTEIN AND NUCLEIC REMARK 1 TITL 3 ACID STRUCTURES REMARK 1 REF J.BIOMOL.NMR V. 21 373 2001 REMARK 1 REFN ISSN 0925-2738 REMARK 1 PMID 11824757 REMARK 1 DOI 10.1023/A:1013369107271 REMARK 1 REFERENCE 3 REMARK 1 AUTH P.NEUDECKER,K.SCHWEIMER,J.NERKAMP,M.BOEHM,S.SCHEURER, REMARK 1 AUTH 2 S.VIETHS,H.STICHT,P.ROESCH REMARK 1 TITL SEQUENCE-SPECIFIC 1H, 13C AND 15N RESONANCE ASSIGNMENTS OF REMARK 1 TITL 2 THE MAJOR CHERRY ALLERGEN PRU A 1 REMARK 1 REF J.BIOMOL.NMR V. 18 71 2000 REMARK 1 REFN ISSN 0925-2738 REMARK 1 PMID 11061231 REMARK 1 DOI 10.1023/A:1008357100592 REMARK 1 REFERENCE 4 REMARK 1 AUTH K.SCHWEIMER,H.STICHT,J.NERKAMP,M.BOEHM,M.BREITENBACH, REMARK 1 AUTH 2 S.VIETHS,P.ROESCH REMARK 1 TITL NMR SPECTROSCOPY REVEALS COMMON STRUCTURAL FEATURES OF THE REMARK 1 TITL 2 BIRCH POLLEN ALLERGEN BET V 1 AND THE CHERRY ALLERGEN PRU A REMARK 1 TITL 3 1 REMARK 1 REF APPL.MAGN.RESON. V. 17 449 1999 REMARK 1 REFN ISSN 0937-9347 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XPLOR-NIH 1.2.1 REMARK 3 AUTHORS : BRUNGER, CLORE, KUSZEWSKI, SCHWIETERS, TJ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1H2O COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-AUG-02. REMARK 100 THE DEPOSITION ID IS D_1290011201. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 90% H2O / 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D-NOESY; 1H; 15N-HSQC; HNHA; 3D REMARK 210 -1H; 15N-TOCSY-HSQC; 15N-NOESY- REMARK 210 HSQC; 15N/1H; 15N-HMQC-NOESY-HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 750 MHZ REMARK 210 SPECTROMETER MODEL : DRX; DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NDEE, NMRVIEW 5.0.4, XPLOR-NIH REMARK 210 1.2.1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 60 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 24 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE CHANGES IN STRUCTURE COMPARED TO PRU AV 1 WT WERE REMARK 210 DETERMINED USING DOUBLE-RESONANCE NMR SPECTROSCOPY ON 15N- REMARK 210 LABELED PRU AV 1 E45W REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 PLANT DEFENSE PROTEIN, MEMBER OF THE BETV1 FAMILY OF REMARK 400 PATHOGENESIS-RELATED PROTEINS. REMARK 400 REMARK 400 ENGINEERED MUTATION GLU 46 TRP REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H LEU A 44 O ILE A 53 1.51 REMARK 500 H TYR A 81 O THR A 102 1.55 REMARK 500 H LYS A 54 O HIS A 69 1.56 REMARK 500 H LYS A 70 O THR A 84 1.56 REMARK 500 O LYS A 70 H THR A 84 1.57 REMARK 500 O SER A 11 H SER A 112 1.58 REMARK 500 H LYS A 103 O LYS A 115 1.58 REMARK 500 O PHE A 9 H ILE A 114 1.60 REMARK 500 O TYR A 81 H THR A 102 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 25 14.49 -146.52 REMARK 500 1 ASP A 47 20.14 -157.68 REMARK 500 1 ASP A 93 34.68 -91.64 REMARK 500 1 THR A 94 -41.64 -131.31 REMARK 500 1 GLU A 96 -80.90 -141.08 REMARK 500 1 ALA A 157 108.74 -46.92 REMARK 500 1 TYR A 158 30.83 35.46 REMARK 500 2 VAL A 23 -60.30 -97.45 REMARK 500 2 ASP A 25 10.95 -146.16 REMARK 500 2 ALA A 37 -63.31 -101.93 REMARK 500 2 ASP A 47 21.54 -151.25 REMARK 500 2 SER A 62 174.34 -46.67 REMARK 500 2 GLN A 63 -84.29 -43.48 REMARK 500 2 GLU A 96 -79.93 -139.35 REMARK 500 2 LYS A 134 -69.74 -104.95 REMARK 500 2 ALA A 157 108.32 -57.78 REMARK 500 2 TYR A 158 31.45 35.31 REMARK 500 3 ASP A 25 30.62 -153.36 REMARK 500 3 ALA A 34 97.40 -170.89 REMARK 500 3 HIS A 40 136.73 -170.97 REMARK 500 3 ASP A 47 19.70 -156.35 REMARK 500 3 SER A 62 -169.06 -55.00 REMARK 500 3 GLU A 96 -79.94 -147.03 REMARK 500 3 ASN A 125 60.42 67.39 REMARK 500 3 LYS A 134 -70.05 -107.72 REMARK 500 3 ALA A 157 106.55 -53.34 REMARK 500 3 TYR A 158 30.27 36.23 REMARK 500 4 ASP A 25 16.52 -152.19 REMARK 500 4 ALA A 34 98.17 -160.44 REMARK 500 4 ASP A 47 24.60 -149.08 REMARK 500 4 GLN A 63 -72.51 -51.54 REMARK 500 4 TYR A 64 100.75 -173.18 REMARK 500 4 THR A 94 -33.73 -160.03 REMARK 500 4 GLU A 96 -77.72 -128.36 REMARK 500 4 TYR A 158 32.67 34.71 REMARK 500 5 ASP A 25 30.44 -155.66 REMARK 500 5 LYS A 32 -32.90 -135.38 REMARK 500 5 ASP A 47 19.12 -155.51 REMARK 500 5 ASP A 93 15.36 56.56 REMARK 500 5 GLU A 96 -78.35 -132.19 REMARK 500 5 THR A 117 117.98 -160.11 REMARK 500 5 ALA A 157 106.11 -53.91 REMARK 500 5 TYR A 158 30.38 36.23 REMARK 500 6 VAL A 23 -62.60 -107.60 REMARK 500 6 ASP A 25 28.40 -143.76 REMARK 500 6 ALA A 37 -69.04 -99.21 REMARK 500 6 HIS A 40 134.77 177.71 REMARK 500 6 ASP A 47 20.23 -156.34 REMARK 500 6 SER A 73 163.08 179.92 REMARK 500 6 GLU A 96 -82.36 -149.90 REMARK 500 REMARK 500 THIS ENTRY HAS 191 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 4 ARG A 17 0.15 SIDE CHAIN REMARK 500 6 ARG A 17 0.22 SIDE CHAIN REMARK 500 9 ARG A 17 0.18 SIDE CHAIN REMARK 500 10 ARG A 17 0.18 SIDE CHAIN REMARK 500 12 ARG A 17 0.12 SIDE CHAIN REMARK 500 14 ARG A 17 0.12 SIDE CHAIN REMARK 500 17 ARG A 17 0.08 SIDE CHAIN REMARK 500 21 ARG A 17 0.08 SIDE CHAIN REMARK 500 22 ARG A 17 0.20 SIDE CHAIN REMARK 500 23 ARG A 17 0.19 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1BTV RELATED DB: PDB REMARK 900 STRUCTURE OF BET V 1, NMR, 20 STRUCTURES REMARK 900 RELATED ID: 1B6F RELATED DB: PDB REMARK 900 BIRCH POLLEN ALLERGEN BET V 1 REMARK 900 RELATED ID: 1BV1 RELATED DB: PDB REMARK 900 BIRCH POLLEN ALLERGEN BET V 1 REMARK 900 RELATED ID: 1E09 RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE MAJOR CHERRY ALLERGEN PRU AV 1 REMARK 900 RELATED ID: 1FSK RELATED DB: PDB REMARK 900 COMPLEX FORMATION BETWEEN A FAB FRAGMENT OF A MONOCLONAL IGG REMARK 900 ANTIBODY AND THE MAJOR ALLERGEN FROM BIRCH POLLEN BET V REMARK 900 RELATED ID: 1QMR RELATED DB: PDB REMARK 900 BIRCH POLLEN ALLERGEN BET V 1 MUTANT N28T, K32Q, E45S, P108G DBREF 1H2O A 1 159 UNP O24248 PRU1_PRUAV 2 160 SEQADV 1H2O TRP A 45 UNP O24248 GLU 46 ENGINEERED MUTATION SEQRES 1 A 159 GLY VAL PHE THR TYR GLU SER GLU PHE THR SER GLU ILE SEQRES 2 A 159 PRO PRO PRO ARG LEU PHE LYS ALA PHE VAL LEU ASP ALA SEQRES 3 A 159 ASP ASN LEU VAL PRO LYS ILE ALA PRO GLN ALA ILE LYS SEQRES 4 A 159 HIS SER GLU ILE LEU TRP GLY ASP GLY GLY PRO GLY THR SEQRES 5 A 159 ILE LYS LYS ILE THR PHE GLY GLU GLY SER GLN TYR GLY SEQRES 6 A 159 TYR VAL LYS HIS LYS ILE ASP SER ILE ASP LYS GLU ASN SEQRES 7 A 159 TYR SER TYR SER TYR THR LEU ILE GLU GLY ASP ALA LEU SEQRES 8 A 159 GLY ASP THR LEU GLU LYS ILE SER TYR GLU THR LYS LEU SEQRES 9 A 159 VAL ALA SER PRO SER GLY GLY SER ILE ILE LYS SER THR SEQRES 10 A 159 SER HIS TYR HIS THR LYS GLY ASN VAL GLU ILE LYS GLU SEQRES 11 A 159 GLU HIS VAL LYS ALA GLY LYS GLU LYS ALA SER ASN LEU SEQRES 12 A 159 PHE LYS LEU ILE GLU THR TYR LEU LYS GLY HIS PRO ASP SEQRES 13 A 159 ALA TYR ASN HELIX 1 1 PRO A 15 PHE A 22 1 8 HELIX 2 2 ALA A 26 ILE A 33 1 8 HELIX 3 4 GLU A 130 GLY A 153 1 24 SHEET 1 A 5 VAL A 2 SER A 11 0 SHEET 2 A 5 SER A 112 THR A 122 -1 N SER A 118 O TYR A 5 SHEET 3 A 5 LYS A 97 LEU A 104 -1 N GLU A 101 O THR A 117 SHEET 4 A 5 SER A 80 LEU A 85 -1 N TYR A 83 O TYR A 100 SHEET 5 A 5 SER A 73 ASP A 75 -1 N ASP A 75 O SER A 80 SHEET 1 B 3 SER A 41 ILE A 43 0 SHEET 2 B 3 ILE A 53 PHE A 58 -1 N LYS A 55 O GLU A 42 SHEET 3 B 3 GLY A 65 ILE A 71 -1 N VAL A 67 O ILE A 56 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1