data_1H3E # _entry.id 1H3E # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.391 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1H3E pdb_00001h3e 10.2210/pdb1h3e/pdb PDBE EBI-11272 ? ? WWPDB D_1290011272 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2002-10-27 2 'Structure model' 1 1 2014-02-05 3 'Structure model' 1 2 2015-08-19 4 'Structure model' 1 3 2018-10-17 5 'Structure model' 1 4 2019-10-30 6 'Structure model' 1 5 2024-05-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Source and taxonomy' 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Atomic model' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Non-polymer description' 6 3 'Structure model' Other 7 3 'Structure model' 'Structure summary' 8 4 'Structure model' 'Data collection' 9 4 'Structure model' 'Structure summary' 10 5 'Structure model' 'Data collection' 11 5 'Structure model' 'Derived calculations' 12 5 'Structure model' Other 13 6 'Structure model' 'Data collection' 14 6 'Structure model' 'Database references' 15 6 'Structure model' 'Derived calculations' 16 6 'Structure model' 'Refinement description' 17 6 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp 2 5 'Structure model' pdbx_database_status 3 5 'Structure model' struct_conn 4 6 'Structure model' chem_comp 5 6 'Structure model' chem_comp_atom 6 6 'Structure model' chem_comp_bond 7 6 'Structure model' database_2 8 6 'Structure model' pdbx_initial_refinement_model 9 6 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_chem_comp.mon_nstd_flag' 2 4 'Structure model' '_chem_comp.pdbx_synonyms' 3 4 'Structure model' '_chem_comp.type' 4 5 'Structure model' '_pdbx_database_status.status_code_sf' 5 6 'Structure model' '_chem_comp.pdbx_synonyms' 6 6 'Structure model' '_database_2.pdbx_DOI' 7 6 'Structure model' '_database_2.pdbx_database_accession' 8 6 'Structure model' '_struct_site.pdbx_auth_asym_id' 9 6 'Structure model' '_struct_site.pdbx_auth_comp_id' 10 6 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1H3E _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2002-08-28 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1H3F _pdbx_database_related.content_type unspecified _pdbx_database_related.details 'TYROSYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS COMPLEXED WITH TYROSINOL' # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Cusack, S.' 1 'Yaremchuk, A.' 2 'Kriklivyi, I.' 3 'Tukalo, M.' 4 # _citation.id primary _citation.title 'Class I Tyrosyl-tRNA Synthetase Has a Class II Mode or tRNA Recognition' _citation.journal_abbrev 'Embo J.' _citation.journal_volume 21 _citation.page_first 3829 _citation.page_last ? _citation.year 2002 _citation.journal_id_ASTM EMJODG _citation.country UK _citation.journal_id_ISSN 0261-4189 _citation.journal_id_CSD 0897 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 12110594 _citation.pdbx_database_id_DOI 10.1093/EMBOJ/CDF373 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Yaremchuk, A.' 1 ? primary 'Kriklivyi, I.' 2 ? primary 'Tukalo, M.' 3 ? primary 'Cusack, S.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'TYROSYL-TRNA SYNTHETASE' 48786.203 1 6.1.1.1 ? ? ? 2 polymer syn 'WILD-TYPE TRNATYR(GUA)' 27709.508 1 ? ? ? ? 3 non-polymer syn "ADENOSINE-5'-TRIPHOSPHATE" 507.181 1 ? ? ? ? 4 non-polymer syn '4-[(2S)-2-amino-3-hydroxypropyl]phenol' 167.205 1 ? ? ? ? 5 water nat water 18.015 13 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'TYROSINE--TRNA LIGASE' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MAGTGHTPEEALALLKRGAEEIVPEEELLAKLKEGRPLTVKLGADPTRPDLHLGHAVVLRKMRQFQELGHKVVLIIGDFT GMIGDPSGRSKTRPPLTLEETRENAKTYVAQAGKILRQEPHLFELRYNSEWLEGLTFKEVVRLTSLMTVAQMLEREDFKK RYEAGIPISLHELLYPFAQAYDSVAIRADVEMGGTDQRFNLLVGREVQRAYGQSPQVCFLMPLLVGLDGREKMSKSLDNY IGLTEPPEAMFKKLMRVPDPLLPSYFRLLTDLEEEEIEALLKAGPVPAHRVLARLLTAAYALPQIPPRIDRAFYESLGYA WEAFGRDKEAGPEEVRRAEARYDEVAKGGIPEEIPEVTIPASELKEGRIWVARLFTLAGLTPSNAEARRLIQNRGLRLDG EVLTDPMLQVDLSRPRILQRGKDRFVRVRLSD ; ;MAGTGHTPEEALALLKRGAEEIVPEEELLAKLKEGRPLTVKLGADPTRPDLHLGHAVVLRKMRQFQELGHKVVLIIGDFT GMIGDPSGRSKTRPPLTLEETRENAKTYVAQAGKILRQEPHLFELRYNSEWLEGLTFKEVVRLTSLMTVAQMLEREDFKK RYEAGIPISLHELLYPFAQAYDSVAIRADVEMGGTDQRFNLLVGREVQRAYGQSPQVCFLMPLLVGLDGREKMSKSLDNY IGLTEPPEAMFKKLMRVPDPLLPSYFRLLTDLEEEEIEALLKAGPVPAHRVLARLLTAAYALPQIPPRIDRAFYESLGYA WEAFGRDKEAGPEEVRRAEARYDEVAKGGIPEEIPEVTIPASELKEGRIWVARLFTLAGLTPSNAEARRLIQNRGLRLDG EVLTDPMLQVDLSRPRILQRGKDRFVRVRLSD ; A ? 2 polyribonucleotide no yes ;GGGCAGGUUCCCGAGCGGCCAAAGGGGACGGUCUG(PSU)AAAACCGUUGGCGUAUGCCUUCGCUGG(5MU)(PSU)CG (1MA)AUCCAGCCCUGCCCACCA ; ;GGGCAGGUUCCCGAGCGGCCAAAGGGGACGGUCUGUAAAACCGUUGGCGUAUGCCUUCGCUGGUUCGAAUCCAGCCCUGC CCACCA ; B ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 "ADENOSINE-5'-TRIPHOSPHATE" ATP 4 '4-[(2S)-2-amino-3-hydroxypropyl]phenol' TYE 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ALA n 1 3 GLY n 1 4 THR n 1 5 GLY n 1 6 HIS n 1 7 THR n 1 8 PRO n 1 9 GLU n 1 10 GLU n 1 11 ALA n 1 12 LEU n 1 13 ALA n 1 14 LEU n 1 15 LEU n 1 16 LYS n 1 17 ARG n 1 18 GLY n 1 19 ALA n 1 20 GLU n 1 21 GLU n 1 22 ILE n 1 23 VAL n 1 24 PRO n 1 25 GLU n 1 26 GLU n 1 27 GLU n 1 28 LEU n 1 29 LEU n 1 30 ALA n 1 31 LYS n 1 32 LEU n 1 33 LYS n 1 34 GLU n 1 35 GLY n 1 36 ARG n 1 37 PRO n 1 38 LEU n 1 39 THR n 1 40 VAL n 1 41 LYS n 1 42 LEU n 1 43 GLY n 1 44 ALA n 1 45 ASP n 1 46 PRO n 1 47 THR n 1 48 ARG n 1 49 PRO n 1 50 ASP n 1 51 LEU n 1 52 HIS n 1 53 LEU n 1 54 GLY n 1 55 HIS n 1 56 ALA n 1 57 VAL n 1 58 VAL n 1 59 LEU n 1 60 ARG n 1 61 LYS n 1 62 MET n 1 63 ARG n 1 64 GLN n 1 65 PHE n 1 66 GLN n 1 67 GLU n 1 68 LEU n 1 69 GLY n 1 70 HIS n 1 71 LYS n 1 72 VAL n 1 73 VAL n 1 74 LEU n 1 75 ILE n 1 76 ILE n 1 77 GLY n 1 78 ASP n 1 79 PHE n 1 80 THR n 1 81 GLY n 1 82 MET n 1 83 ILE n 1 84 GLY n 1 85 ASP n 1 86 PRO n 1 87 SER n 1 88 GLY n 1 89 ARG n 1 90 SER n 1 91 LYS n 1 92 THR n 1 93 ARG n 1 94 PRO n 1 95 PRO n 1 96 LEU n 1 97 THR n 1 98 LEU n 1 99 GLU n 1 100 GLU n 1 101 THR n 1 102 ARG n 1 103 GLU n 1 104 ASN n 1 105 ALA n 1 106 LYS n 1 107 THR n 1 108 TYR n 1 109 VAL n 1 110 ALA n 1 111 GLN n 1 112 ALA n 1 113 GLY n 1 114 LYS n 1 115 ILE n 1 116 LEU n 1 117 ARG n 1 118 GLN n 1 119 GLU n 1 120 PRO n 1 121 HIS n 1 122 LEU n 1 123 PHE n 1 124 GLU n 1 125 LEU n 1 126 ARG n 1 127 TYR n 1 128 ASN n 1 129 SER n 1 130 GLU n 1 131 TRP n 1 132 LEU n 1 133 GLU n 1 134 GLY n 1 135 LEU n 1 136 THR n 1 137 PHE n 1 138 LYS n 1 139 GLU n 1 140 VAL n 1 141 VAL n 1 142 ARG n 1 143 LEU n 1 144 THR n 1 145 SER n 1 146 LEU n 1 147 MET n 1 148 THR n 1 149 VAL n 1 150 ALA n 1 151 GLN n 1 152 MET n 1 153 LEU n 1 154 GLU n 1 155 ARG n 1 156 GLU n 1 157 ASP n 1 158 PHE n 1 159 LYS n 1 160 LYS n 1 161 ARG n 1 162 TYR n 1 163 GLU n 1 164 ALA n 1 165 GLY n 1 166 ILE n 1 167 PRO n 1 168 ILE n 1 169 SER n 1 170 LEU n 1 171 HIS n 1 172 GLU n 1 173 LEU n 1 174 LEU n 1 175 TYR n 1 176 PRO n 1 177 PHE n 1 178 ALA n 1 179 GLN n 1 180 ALA n 1 181 TYR n 1 182 ASP n 1 183 SER n 1 184 VAL n 1 185 ALA n 1 186 ILE n 1 187 ARG n 1 188 ALA n 1 189 ASP n 1 190 VAL n 1 191 GLU n 1 192 MET n 1 193 GLY n 1 194 GLY n 1 195 THR n 1 196 ASP n 1 197 GLN n 1 198 ARG n 1 199 PHE n 1 200 ASN n 1 201 LEU n 1 202 LEU n 1 203 VAL n 1 204 GLY n 1 205 ARG n 1 206 GLU n 1 207 VAL n 1 208 GLN n 1 209 ARG n 1 210 ALA n 1 211 TYR n 1 212 GLY n 1 213 GLN n 1 214 SER n 1 215 PRO n 1 216 GLN n 1 217 VAL n 1 218 CYS n 1 219 PHE n 1 220 LEU n 1 221 MET n 1 222 PRO n 1 223 LEU n 1 224 LEU n 1 225 VAL n 1 226 GLY n 1 227 LEU n 1 228 ASP n 1 229 GLY n 1 230 ARG n 1 231 GLU n 1 232 LYS n 1 233 MET n 1 234 SER n 1 235 LYS n 1 236 SER n 1 237 LEU n 1 238 ASP n 1 239 ASN n 1 240 TYR n 1 241 ILE n 1 242 GLY n 1 243 LEU n 1 244 THR n 1 245 GLU n 1 246 PRO n 1 247 PRO n 1 248 GLU n 1 249 ALA n 1 250 MET n 1 251 PHE n 1 252 LYS n 1 253 LYS n 1 254 LEU n 1 255 MET n 1 256 ARG n 1 257 VAL n 1 258 PRO n 1 259 ASP n 1 260 PRO n 1 261 LEU n 1 262 LEU n 1 263 PRO n 1 264 SER n 1 265 TYR n 1 266 PHE n 1 267 ARG n 1 268 LEU n 1 269 LEU n 1 270 THR n 1 271 ASP n 1 272 LEU n 1 273 GLU n 1 274 GLU n 1 275 GLU n 1 276 GLU n 1 277 ILE n 1 278 GLU n 1 279 ALA n 1 280 LEU n 1 281 LEU n 1 282 LYS n 1 283 ALA n 1 284 GLY n 1 285 PRO n 1 286 VAL n 1 287 PRO n 1 288 ALA n 1 289 HIS n 1 290 ARG n 1 291 VAL n 1 292 LEU n 1 293 ALA n 1 294 ARG n 1 295 LEU n 1 296 LEU n 1 297 THR n 1 298 ALA n 1 299 ALA n 1 300 TYR n 1 301 ALA n 1 302 LEU n 1 303 PRO n 1 304 GLN n 1 305 ILE n 1 306 PRO n 1 307 PRO n 1 308 ARG n 1 309 ILE n 1 310 ASP n 1 311 ARG n 1 312 ALA n 1 313 PHE n 1 314 TYR n 1 315 GLU n 1 316 SER n 1 317 LEU n 1 318 GLY n 1 319 TYR n 1 320 ALA n 1 321 TRP n 1 322 GLU n 1 323 ALA n 1 324 PHE n 1 325 GLY n 1 326 ARG n 1 327 ASP n 1 328 LYS n 1 329 GLU n 1 330 ALA n 1 331 GLY n 1 332 PRO n 1 333 GLU n 1 334 GLU n 1 335 VAL n 1 336 ARG n 1 337 ARG n 1 338 ALA n 1 339 GLU n 1 340 ALA n 1 341 ARG n 1 342 TYR n 1 343 ASP n 1 344 GLU n 1 345 VAL n 1 346 ALA n 1 347 LYS n 1 348 GLY n 1 349 GLY n 1 350 ILE n 1 351 PRO n 1 352 GLU n 1 353 GLU n 1 354 ILE n 1 355 PRO n 1 356 GLU n 1 357 VAL n 1 358 THR n 1 359 ILE n 1 360 PRO n 1 361 ALA n 1 362 SER n 1 363 GLU n 1 364 LEU n 1 365 LYS n 1 366 GLU n 1 367 GLY n 1 368 ARG n 1 369 ILE n 1 370 TRP n 1 371 VAL n 1 372 ALA n 1 373 ARG n 1 374 LEU n 1 375 PHE n 1 376 THR n 1 377 LEU n 1 378 ALA n 1 379 GLY n 1 380 LEU n 1 381 THR n 1 382 PRO n 1 383 SER n 1 384 ASN n 1 385 ALA n 1 386 GLU n 1 387 ALA n 1 388 ARG n 1 389 ARG n 1 390 LEU n 1 391 ILE n 1 392 GLN n 1 393 ASN n 1 394 ARG n 1 395 GLY n 1 396 LEU n 1 397 ARG n 1 398 LEU n 1 399 ASP n 1 400 GLY n 1 401 GLU n 1 402 VAL n 1 403 LEU n 1 404 THR n 1 405 ASP n 1 406 PRO n 1 407 MET n 1 408 LEU n 1 409 GLN n 1 410 VAL n 1 411 ASP n 1 412 LEU n 1 413 SER n 1 414 ARG n 1 415 PRO n 1 416 ARG n 1 417 ILE n 1 418 LEU n 1 419 GLN n 1 420 ARG n 1 421 GLY n 1 422 LYS n 1 423 ASP n 1 424 ARG n 1 425 PHE n 1 426 VAL n 1 427 ARG n 1 428 VAL n 1 429 ARG n 1 430 LEU n 1 431 SER n 1 432 ASP n 2 1 G n 2 2 G n 2 3 G n 2 4 C n 2 5 A n 2 6 G n 2 7 G n 2 8 U n 2 9 U n 2 10 C n 2 11 C n 2 12 C n 2 13 G n 2 14 A n 2 15 G n 2 16 C n 2 17 G n 2 18 G n 2 19 C n 2 20 C n 2 21 A n 2 22 A n 2 23 A n 2 24 G n 2 25 G n 2 26 G n 2 27 G n 2 28 A n 2 29 C n 2 30 G n 2 31 G n 2 32 U n 2 33 C n 2 34 U n 2 35 G n 2 36 PSU n 2 37 A n 2 38 A n 2 39 A n 2 40 A n 2 41 C n 2 42 C n 2 43 G n 2 44 U n 2 45 U n 2 46 G n 2 47 G n 2 48 C n 2 49 G n 2 50 U n 2 51 A n 2 52 U n 2 53 G n 2 54 C n 2 55 C n 2 56 U n 2 57 U n 2 58 C n 2 59 G n 2 60 C n 2 61 U n 2 62 G n 2 63 G n 2 64 5MU n 2 65 PSU n 2 66 C n 2 67 G n 2 68 1MA n 2 69 A n 2 70 U n 2 71 C n 2 72 C n 2 73 A n 2 74 G n 2 75 C n 2 76 C n 2 77 C n 2 78 U n 2 79 G n 2 80 C n 2 81 C n 2 82 C n 2 83 A n 2 84 C n 2 85 C n 2 86 A n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain HB27 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'THERMUS THERMOPHILUS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 262724 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector PET29B _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'THERMUS THERMOPHILUS' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 274 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 1MA 'RNA linking' n "6-HYDRO-1-METHYLADENOSINE-5'-MONOPHOSPHATE" ? 'C11 H16 N5 O7 P' 361.248 5MU 'RNA linking' n ;5-METHYLURIDINE 5'-MONOPHOSPHATE ; ? 'C10 H15 N2 O9 P' 338.208 A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 ATP non-polymer . "ADENOSINE-5'-TRIPHOSPHATE" ? 'C10 H16 N5 O13 P3' 507.181 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 PSU 'RNA linking' n "PSEUDOURIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYE 'L-peptide linking' n '4-[(2S)-2-amino-3-hydroxypropyl]phenol' 'tyrosinol; bound form of TYROSINAL' 'C9 H13 N O2' 167.205 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 ALA 2 2 ? ? ? A . n A 1 3 GLY 3 3 ? ? ? A . n A 1 4 THR 4 4 ? ? ? A . n A 1 5 GLY 5 5 ? ? ? A . n A 1 6 HIS 6 6 6 HIS HIS A . n A 1 7 THR 7 7 7 THR THR A . n A 1 8 PRO 8 8 8 PRO PRO A . n A 1 9 GLU 9 9 9 GLU GLU A . n A 1 10 GLU 10 10 10 GLU GLU A . n A 1 11 ALA 11 11 11 ALA ALA A . n A 1 12 LEU 12 12 12 LEU LEU A . n A 1 13 ALA 13 13 13 ALA ALA A . n A 1 14 LEU 14 14 14 LEU LEU A . n A 1 15 LEU 15 15 15 LEU LEU A . n A 1 16 LYS 16 16 16 LYS LYS A . n A 1 17 ARG 17 17 17 ARG ARG A . n A 1 18 GLY 18 18 18 GLY GLY A . n A 1 19 ALA 19 19 19 ALA ALA A . n A 1 20 GLU 20 20 20 GLU GLU A . n A 1 21 GLU 21 21 21 GLU GLU A . n A 1 22 ILE 22 22 22 ILE ILE A . n A 1 23 VAL 23 23 23 VAL VAL A . n A 1 24 PRO 24 24 24 PRO PRO A . n A 1 25 GLU 25 25 25 GLU GLU A . n A 1 26 GLU 26 26 26 GLU GLU A . n A 1 27 GLU 27 27 27 GLU GLU A . n A 1 28 LEU 28 28 28 LEU LEU A . n A 1 29 LEU 29 29 29 LEU LEU A . n A 1 30 ALA 30 30 30 ALA ALA A . n A 1 31 LYS 31 31 31 LYS LYS A . n A 1 32 LEU 32 32 32 LEU LEU A . n A 1 33 LYS 33 33 33 LYS LYS A . n A 1 34 GLU 34 34 34 GLU GLU A . n A 1 35 GLY 35 35 35 GLY GLY A . n A 1 36 ARG 36 36 36 ARG ARG A . n A 1 37 PRO 37 37 37 PRO PRO A . n A 1 38 LEU 38 38 38 LEU LEU A . n A 1 39 THR 39 39 39 THR THR A . n A 1 40 VAL 40 40 40 VAL VAL A . n A 1 41 LYS 41 41 41 LYS LYS A . n A 1 42 LEU 42 42 42 LEU LEU A . n A 1 43 GLY 43 43 43 GLY GLY A . n A 1 44 ALA 44 44 44 ALA ALA A . n A 1 45 ASP 45 45 45 ASP ASP A . n A 1 46 PRO 46 46 46 PRO PRO A . n A 1 47 THR 47 47 47 THR THR A . n A 1 48 ARG 48 48 48 ARG ARG A . n A 1 49 PRO 49 49 49 PRO PRO A . n A 1 50 ASP 50 50 50 ASP ASP A . n A 1 51 LEU 51 51 51 LEU LEU A . n A 1 52 HIS 52 52 52 HIS HIS A . n A 1 53 LEU 53 53 53 LEU LEU A . n A 1 54 GLY 54 54 54 GLY GLY A . n A 1 55 HIS 55 55 55 HIS HIS A . n A 1 56 ALA 56 56 56 ALA ALA A . n A 1 57 VAL 57 57 57 VAL VAL A . n A 1 58 VAL 58 58 58 VAL VAL A . n A 1 59 LEU 59 59 59 LEU LEU A . n A 1 60 ARG 60 60 60 ARG ARG A . n A 1 61 LYS 61 61 61 LYS LYS A . n A 1 62 MET 62 62 62 MET MET A . n A 1 63 ARG 63 63 63 ARG ARG A . n A 1 64 GLN 64 64 64 GLN GLN A . n A 1 65 PHE 65 65 65 PHE PHE A . n A 1 66 GLN 66 66 66 GLN GLN A . n A 1 67 GLU 67 67 67 GLU GLU A . n A 1 68 LEU 68 68 68 LEU LEU A . n A 1 69 GLY 69 69 69 GLY GLY A . n A 1 70 HIS 70 70 70 HIS HIS A . n A 1 71 LYS 71 71 71 LYS LYS A . n A 1 72 VAL 72 72 72 VAL VAL A . n A 1 73 VAL 73 73 73 VAL VAL A . n A 1 74 LEU 74 74 74 LEU LEU A . n A 1 75 ILE 75 75 75 ILE ILE A . n A 1 76 ILE 76 76 76 ILE ILE A . n A 1 77 GLY 77 77 77 GLY GLY A . n A 1 78 ASP 78 78 78 ASP ASP A . n A 1 79 PHE 79 79 79 PHE PHE A . n A 1 80 THR 80 80 80 THR THR A . n A 1 81 GLY 81 81 81 GLY GLY A . n A 1 82 MET 82 82 82 MET MET A . n A 1 83 ILE 83 83 83 ILE ILE A . n A 1 84 GLY 84 84 84 GLY GLY A . n A 1 85 ASP 85 85 85 ASP ASP A . n A 1 86 PRO 86 86 86 PRO PRO A . n A 1 87 SER 87 87 87 SER SER A . n A 1 88 GLY 88 88 88 GLY GLY A . n A 1 89 ARG 89 89 89 ARG ARG A . n A 1 90 SER 90 90 90 SER SER A . n A 1 91 LYS 91 91 91 LYS LYS A . n A 1 92 THR 92 92 92 THR THR A . n A 1 93 ARG 93 93 93 ARG ARG A . n A 1 94 PRO 94 94 94 PRO PRO A . n A 1 95 PRO 95 95 95 PRO PRO A . n A 1 96 LEU 96 96 96 LEU LEU A . n A 1 97 THR 97 97 97 THR THR A . n A 1 98 LEU 98 98 98 LEU LEU A . n A 1 99 GLU 99 99 99 GLU GLU A . n A 1 100 GLU 100 100 100 GLU GLU A . n A 1 101 THR 101 101 101 THR THR A . n A 1 102 ARG 102 102 102 ARG ARG A . n A 1 103 GLU 103 103 103 GLU GLU A . n A 1 104 ASN 104 104 104 ASN ASN A . n A 1 105 ALA 105 105 105 ALA ALA A . n A 1 106 LYS 106 106 106 LYS LYS A . n A 1 107 THR 107 107 107 THR THR A . n A 1 108 TYR 108 108 108 TYR TYR A . n A 1 109 VAL 109 109 109 VAL VAL A . n A 1 110 ALA 110 110 110 ALA ALA A . n A 1 111 GLN 111 111 111 GLN GLN A . n A 1 112 ALA 112 112 112 ALA ALA A . n A 1 113 GLY 113 113 113 GLY GLY A . n A 1 114 LYS 114 114 114 LYS LYS A . n A 1 115 ILE 115 115 115 ILE ILE A . n A 1 116 LEU 116 116 116 LEU LEU A . n A 1 117 ARG 117 117 117 ARG ARG A . n A 1 118 GLN 118 118 118 GLN GLN A . n A 1 119 GLU 119 119 119 GLU GLU A . n A 1 120 PRO 120 120 120 PRO PRO A . n A 1 121 HIS 121 121 121 HIS HIS A . n A 1 122 LEU 122 122 122 LEU LEU A . n A 1 123 PHE 123 123 123 PHE PHE A . n A 1 124 GLU 124 124 124 GLU GLU A . n A 1 125 LEU 125 125 125 LEU LEU A . n A 1 126 ARG 126 126 126 ARG ARG A . n A 1 127 TYR 127 127 127 TYR TYR A . n A 1 128 ASN 128 128 128 ASN ASN A . n A 1 129 SER 129 129 129 SER SER A . n A 1 130 GLU 130 130 130 GLU GLU A . n A 1 131 TRP 131 131 131 TRP TRP A . n A 1 132 LEU 132 132 132 LEU LEU A . n A 1 133 GLU 133 133 133 GLU GLU A . n A 1 134 GLY 134 134 134 GLY GLY A . n A 1 135 LEU 135 135 135 LEU LEU A . n A 1 136 THR 136 136 136 THR THR A . n A 1 137 PHE 137 137 137 PHE PHE A . n A 1 138 LYS 138 138 138 LYS LYS A . n A 1 139 GLU 139 139 139 GLU GLU A . n A 1 140 VAL 140 140 140 VAL VAL A . n A 1 141 VAL 141 141 141 VAL VAL A . n A 1 142 ARG 142 142 142 ARG ARG A . n A 1 143 LEU 143 143 143 LEU LEU A . n A 1 144 THR 144 144 144 THR THR A . n A 1 145 SER 145 145 145 SER SER A . n A 1 146 LEU 146 146 146 LEU LEU A . n A 1 147 MET 147 147 147 MET MET A . n A 1 148 THR 148 148 148 THR THR A . n A 1 149 VAL 149 149 149 VAL VAL A . n A 1 150 ALA 150 150 150 ALA ALA A . n A 1 151 GLN 151 151 151 GLN GLN A . n A 1 152 MET 152 152 152 MET MET A . n A 1 153 LEU 153 153 153 LEU LEU A . n A 1 154 GLU 154 154 154 GLU GLU A . n A 1 155 ARG 155 155 155 ARG ARG A . n A 1 156 GLU 156 156 156 GLU GLU A . n A 1 157 ASP 157 157 157 ASP ASP A . n A 1 158 PHE 158 158 158 PHE PHE A . n A 1 159 LYS 159 159 159 LYS LYS A . n A 1 160 LYS 160 160 160 LYS LYS A . n A 1 161 ARG 161 161 161 ARG ARG A . n A 1 162 TYR 162 162 162 TYR TYR A . n A 1 163 GLU 163 163 163 GLU GLU A . n A 1 164 ALA 164 164 164 ALA ALA A . n A 1 165 GLY 165 165 165 GLY GLY A . n A 1 166 ILE 166 166 166 ILE ILE A . n A 1 167 PRO 167 167 167 PRO PRO A . n A 1 168 ILE 168 168 168 ILE ILE A . n A 1 169 SER 169 169 169 SER SER A . n A 1 170 LEU 170 170 170 LEU LEU A . n A 1 171 HIS 171 171 171 HIS HIS A . n A 1 172 GLU 172 172 172 GLU GLU A . n A 1 173 LEU 173 173 173 LEU LEU A . n A 1 174 LEU 174 174 174 LEU LEU A . n A 1 175 TYR 175 175 175 TYR TYR A . n A 1 176 PRO 176 176 176 PRO PRO A . n A 1 177 PHE 177 177 177 PHE PHE A . n A 1 178 ALA 178 178 178 ALA ALA A . n A 1 179 GLN 179 179 179 GLN GLN A . n A 1 180 ALA 180 180 180 ALA ALA A . n A 1 181 TYR 181 181 181 TYR TYR A . n A 1 182 ASP 182 182 182 ASP ASP A . n A 1 183 SER 183 183 183 SER SER A . n A 1 184 VAL 184 184 184 VAL VAL A . n A 1 185 ALA 185 185 185 ALA ALA A . n A 1 186 ILE 186 186 186 ILE ILE A . n A 1 187 ARG 187 187 187 ARG ARG A . n A 1 188 ALA 188 188 188 ALA ALA A . n A 1 189 ASP 189 189 189 ASP ASP A . n A 1 190 VAL 190 190 190 VAL VAL A . n A 1 191 GLU 191 191 191 GLU GLU A . n A 1 192 MET 192 192 192 MET MET A . n A 1 193 GLY 193 193 193 GLY GLY A . n A 1 194 GLY 194 194 194 GLY GLY A . n A 1 195 THR 195 195 195 THR THR A . n A 1 196 ASP 196 196 196 ASP ASP A . n A 1 197 GLN 197 197 197 GLN GLN A . n A 1 198 ARG 198 198 198 ARG ARG A . n A 1 199 PHE 199 199 199 PHE PHE A . n A 1 200 ASN 200 200 200 ASN ASN A . n A 1 201 LEU 201 201 201 LEU LEU A . n A 1 202 LEU 202 202 202 LEU LEU A . n A 1 203 VAL 203 203 203 VAL VAL A . n A 1 204 GLY 204 204 204 GLY GLY A . n A 1 205 ARG 205 205 205 ARG ARG A . n A 1 206 GLU 206 206 206 GLU GLU A . n A 1 207 VAL 207 207 207 VAL VAL A . n A 1 208 GLN 208 208 208 GLN GLN A . n A 1 209 ARG 209 209 209 ARG ARG A . n A 1 210 ALA 210 210 210 ALA ALA A . n A 1 211 TYR 211 211 211 TYR TYR A . n A 1 212 GLY 212 212 212 GLY GLY A . n A 1 213 GLN 213 213 213 GLN GLN A . n A 1 214 SER 214 214 214 SER SER A . n A 1 215 PRO 215 215 215 PRO PRO A . n A 1 216 GLN 216 216 216 GLN GLN A . n A 1 217 VAL 217 217 217 VAL VAL A . n A 1 218 CYS 218 218 218 CYS CYS A . n A 1 219 PHE 219 219 219 PHE PHE A . n A 1 220 LEU 220 220 220 LEU LEU A . n A 1 221 MET 221 221 221 MET MET A . n A 1 222 PRO 222 222 222 PRO PRO A . n A 1 223 LEU 223 223 223 LEU LEU A . n A 1 224 LEU 224 224 224 LEU LEU A . n A 1 225 VAL 225 225 225 VAL VAL A . n A 1 226 GLY 226 226 226 GLY GLY A . n A 1 227 LEU 227 227 227 LEU LEU A . n A 1 228 ASP 228 228 228 ASP ASP A . n A 1 229 GLY 229 229 229 GLY GLY A . n A 1 230 ARG 230 230 230 ARG ARG A . n A 1 231 GLU 231 231 231 GLU GLU A . n A 1 232 LYS 232 232 232 LYS LYS A . n A 1 233 MET 233 233 233 MET MET A . n A 1 234 SER 234 234 234 SER SER A . n A 1 235 LYS 235 235 235 LYS LYS A . n A 1 236 SER 236 236 236 SER SER A . n A 1 237 LEU 237 237 237 LEU LEU A . n A 1 238 ASP 238 238 238 ASP ASP A . n A 1 239 ASN 239 239 239 ASN ASN A . n A 1 240 TYR 240 240 240 TYR TYR A . n A 1 241 ILE 241 241 241 ILE ILE A . n A 1 242 GLY 242 242 242 GLY GLY A . n A 1 243 LEU 243 243 243 LEU LEU A . n A 1 244 THR 244 244 244 THR THR A . n A 1 245 GLU 245 245 245 GLU GLU A . n A 1 246 PRO 246 246 246 PRO PRO A . n A 1 247 PRO 247 247 247 PRO PRO A . n A 1 248 GLU 248 248 248 GLU GLU A . n A 1 249 ALA 249 249 249 ALA ALA A . n A 1 250 MET 250 250 250 MET MET A . n A 1 251 PHE 251 251 251 PHE PHE A . n A 1 252 LYS 252 252 252 LYS LYS A . n A 1 253 LYS 253 253 253 LYS LYS A . n A 1 254 LEU 254 254 254 LEU LEU A . n A 1 255 MET 255 255 255 MET MET A . n A 1 256 ARG 256 256 256 ARG ARG A . n A 1 257 VAL 257 257 257 VAL VAL A . n A 1 258 PRO 258 258 258 PRO PRO A . n A 1 259 ASP 259 259 259 ASP ASP A . n A 1 260 PRO 260 260 260 PRO PRO A . n A 1 261 LEU 261 261 261 LEU LEU A . n A 1 262 LEU 262 262 262 LEU LEU A . n A 1 263 PRO 263 263 263 PRO PRO A . n A 1 264 SER 264 264 264 SER SER A . n A 1 265 TYR 265 265 265 TYR TYR A . n A 1 266 PHE 266 266 266 PHE PHE A . n A 1 267 ARG 267 267 267 ARG ARG A . n A 1 268 LEU 268 268 268 LEU LEU A . n A 1 269 LEU 269 269 269 LEU LEU A . n A 1 270 THR 270 270 270 THR THR A . n A 1 271 ASP 271 271 271 ASP ASP A . n A 1 272 LEU 272 272 272 LEU LEU A . n A 1 273 GLU 273 273 273 GLU GLU A . n A 1 274 GLU 274 274 274 GLU GLU A . n A 1 275 GLU 275 275 275 GLU GLU A . n A 1 276 GLU 276 276 276 GLU GLU A . n A 1 277 ILE 277 277 277 ILE ILE A . n A 1 278 GLU 278 278 278 GLU GLU A . n A 1 279 ALA 279 279 279 ALA ALA A . n A 1 280 LEU 280 280 280 LEU LEU A . n A 1 281 LEU 281 281 281 LEU LEU A . n A 1 282 LYS 282 282 282 LYS LYS A . n A 1 283 ALA 283 283 283 ALA ALA A . n A 1 284 GLY 284 284 284 GLY GLY A . n A 1 285 PRO 285 285 285 PRO PRO A . n A 1 286 VAL 286 286 286 VAL VAL A . n A 1 287 PRO 287 287 287 PRO PRO A . n A 1 288 ALA 288 288 288 ALA ALA A . n A 1 289 HIS 289 289 289 HIS HIS A . n A 1 290 ARG 290 290 290 ARG ARG A . n A 1 291 VAL 291 291 291 VAL VAL A . n A 1 292 LEU 292 292 292 LEU LEU A . n A 1 293 ALA 293 293 293 ALA ALA A . n A 1 294 ARG 294 294 294 ARG ARG A . n A 1 295 LEU 295 295 295 LEU LEU A . n A 1 296 LEU 296 296 296 LEU LEU A . n A 1 297 THR 297 297 297 THR THR A . n A 1 298 ALA 298 298 298 ALA ALA A . n A 1 299 ALA 299 299 299 ALA ALA A . n A 1 300 TYR 300 300 300 TYR TYR A . n A 1 301 ALA 301 301 301 ALA ALA A . n A 1 302 LEU 302 302 302 LEU LEU A . n A 1 303 PRO 303 303 303 PRO PRO A . n A 1 304 GLN 304 304 304 GLN GLN A . n A 1 305 ILE 305 305 305 ILE ILE A . n A 1 306 PRO 306 306 306 PRO PRO A . n A 1 307 PRO 307 307 307 PRO PRO A . n A 1 308 ARG 308 308 308 ARG ARG A . n A 1 309 ILE 309 309 309 ILE ILE A . n A 1 310 ASP 310 310 310 ASP ASP A . n A 1 311 ARG 311 311 311 ARG ARG A . n A 1 312 ALA 312 312 312 ALA ALA A . n A 1 313 PHE 313 313 313 PHE PHE A . n A 1 314 TYR 314 314 314 TYR TYR A . n A 1 315 GLU 315 315 315 GLU GLU A . n A 1 316 SER 316 316 316 SER SER A . n A 1 317 LEU 317 317 317 LEU LEU A . n A 1 318 GLY 318 318 318 GLY GLY A . n A 1 319 TYR 319 319 319 TYR TYR A . n A 1 320 ALA 320 320 320 ALA ALA A . n A 1 321 TRP 321 321 321 TRP TRP A . n A 1 322 GLU 322 322 322 GLU GLU A . n A 1 323 ALA 323 323 323 ALA ALA A . n A 1 324 PHE 324 324 324 PHE PHE A . n A 1 325 GLY 325 325 325 GLY GLY A . n A 1 326 ARG 326 326 326 ARG ARG A . n A 1 327 ASP 327 327 327 ASP ASP A . n A 1 328 LYS 328 328 328 LYS LYS A . n A 1 329 GLU 329 329 329 GLU GLU A . n A 1 330 ALA 330 330 330 ALA ALA A . n A 1 331 GLY 331 331 331 GLY GLY A . n A 1 332 PRO 332 332 332 PRO PRO A . n A 1 333 GLU 333 333 333 GLU GLU A . n A 1 334 GLU 334 334 334 GLU GLU A . n A 1 335 VAL 335 335 335 VAL VAL A . n A 1 336 ARG 336 336 336 ARG ARG A . n A 1 337 ARG 337 337 337 ARG ARG A . n A 1 338 ALA 338 338 338 ALA ALA A . n A 1 339 GLU 339 339 339 GLU GLU A . n A 1 340 ALA 340 340 340 ALA ALA A . n A 1 341 ARG 341 341 341 ARG ARG A . n A 1 342 TYR 342 342 342 TYR TYR A . n A 1 343 ASP 343 343 343 ASP ASP A . n A 1 344 GLU 344 344 344 GLU GLU A . n A 1 345 VAL 345 345 345 VAL VAL A . n A 1 346 ALA 346 346 346 ALA ALA A . n A 1 347 LYS 347 347 347 LYS LYS A . n A 1 348 GLY 348 348 348 GLY GLY A . n A 1 349 GLY 349 349 349 GLY GLY A . n A 1 350 ILE 350 350 350 ILE ILE A . n A 1 351 PRO 351 351 351 PRO PRO A . n A 1 352 GLU 352 352 352 GLU GLU A . n A 1 353 GLU 353 353 353 GLU GLU A . n A 1 354 ILE 354 354 354 ILE ILE A . n A 1 355 PRO 355 355 355 PRO PRO A . n A 1 356 GLU 356 356 356 GLU GLU A . n A 1 357 VAL 357 357 357 VAL VAL A . n A 1 358 THR 358 358 358 THR THR A . n A 1 359 ILE 359 359 359 ILE ILE A . n A 1 360 PRO 360 360 360 PRO PRO A . n A 1 361 ALA 361 361 361 ALA ALA A . n A 1 362 SER 362 362 362 SER SER A . n A 1 363 GLU 363 363 363 GLU GLU A . n A 1 364 LEU 364 364 364 LEU LEU A . n A 1 365 LYS 365 365 365 LYS LYS A . n A 1 366 GLU 366 366 366 GLU GLU A . n A 1 367 GLY 367 367 367 GLY GLY A . n A 1 368 ARG 368 368 368 ARG ARG A . n A 1 369 ILE 369 369 369 ILE ILE A . n A 1 370 TRP 370 370 370 TRP TRP A . n A 1 371 VAL 371 371 371 VAL VAL A . n A 1 372 ALA 372 372 372 ALA ALA A . n A 1 373 ARG 373 373 373 ARG ARG A . n A 1 374 LEU 374 374 374 LEU LEU A . n A 1 375 PHE 375 375 375 PHE PHE A . n A 1 376 THR 376 376 376 THR THR A . n A 1 377 LEU 377 377 377 LEU LEU A . n A 1 378 ALA 378 378 378 ALA ALA A . n A 1 379 GLY 379 379 379 GLY GLY A . n A 1 380 LEU 380 380 380 LEU LEU A . n A 1 381 THR 381 381 381 THR THR A . n A 1 382 PRO 382 382 382 PRO PRO A . n A 1 383 SER 383 383 383 SER SER A . n A 1 384 ASN 384 384 384 ASN ASN A . n A 1 385 ALA 385 385 385 ALA ALA A . n A 1 386 GLU 386 386 386 GLU GLU A . n A 1 387 ALA 387 387 387 ALA ALA A . n A 1 388 ARG 388 388 388 ARG ARG A . n A 1 389 ARG 389 389 389 ARG ARG A . n A 1 390 LEU 390 390 390 LEU LEU A . n A 1 391 ILE 391 391 391 ILE ILE A . n A 1 392 GLN 392 392 392 GLN GLN A . n A 1 393 ASN 393 393 393 ASN ASN A . n A 1 394 ARG 394 394 394 ARG ARG A . n A 1 395 GLY 395 395 395 GLY GLY A . n A 1 396 LEU 396 396 396 LEU LEU A . n A 1 397 ARG 397 397 397 ARG ARG A . n A 1 398 LEU 398 398 398 LEU LEU A . n A 1 399 ASP 399 399 399 ASP ASP A . n A 1 400 GLY 400 400 400 GLY GLY A . n A 1 401 GLU 401 401 401 GLU GLU A . n A 1 402 VAL 402 402 402 VAL VAL A . n A 1 403 LEU 403 403 403 LEU LEU A . n A 1 404 THR 404 404 404 THR THR A . n A 1 405 ASP 405 405 405 ASP ASP A . n A 1 406 PRO 406 406 406 PRO PRO A . n A 1 407 MET 407 407 407 MET MET A . n A 1 408 LEU 408 408 408 LEU LEU A . n A 1 409 GLN 409 409 409 GLN GLN A . n A 1 410 VAL 410 410 410 VAL VAL A . n A 1 411 ASP 411 411 411 ASP ASP A . n A 1 412 LEU 412 412 412 LEU LEU A . n A 1 413 SER 413 413 413 SER SER A . n A 1 414 ARG 414 414 414 ARG ARG A . n A 1 415 PRO 415 415 415 PRO PRO A . n A 1 416 ARG 416 416 416 ARG ARG A . n A 1 417 ILE 417 417 417 ILE ILE A . n A 1 418 LEU 418 418 418 LEU LEU A . n A 1 419 GLN 419 419 419 GLN GLN A . n A 1 420 ARG 420 420 420 ARG ARG A . n A 1 421 GLY 421 421 421 GLY GLY A . n A 1 422 LYS 422 422 422 LYS LYS A . n A 1 423 ASP 423 423 423 ASP ASP A . n A 1 424 ARG 424 424 424 ARG ARG A . n A 1 425 PHE 425 425 425 PHE PHE A . n A 1 426 VAL 426 426 426 VAL VAL A . n A 1 427 ARG 427 427 427 ARG ARG A . n A 1 428 VAL 428 428 428 VAL VAL A . n A 1 429 ARG 429 429 429 ARG ARG A . n A 1 430 LEU 430 430 430 LEU LEU A . n A 1 431 SER 431 431 431 SER SER A . n A 1 432 ASP 432 432 432 ASP ASP A . n B 2 1 G 1 1 1 G G B . n B 2 2 G 2 2 2 G G B . n B 2 3 G 3 3 3 G G B . n B 2 4 C 4 4 4 C C B . n B 2 5 A 5 5 5 A A B . n B 2 6 G 6 6 6 G G B . n B 2 7 G 7 7 7 G G B . n B 2 8 U 8 8 8 U U B . n B 2 9 U 9 9 9 U U B . n B 2 10 C 10 10 10 C C B . n B 2 11 C 11 11 11 C C B . n B 2 12 C 12 12 12 C C B . n B 2 13 G 13 13 13 G G B . n B 2 14 A 14 14 14 A A B . n B 2 15 G 15 15 15 G G B . n B 2 16 C 16 16 16 C C B . n B 2 17 G 17 18 18 G G B . n B 2 18 G 18 19 19 G G B . n B 2 19 C 19 20 20 C C B . n B 2 20 C 20 20 20 C C B A n B 2 21 A 21 20 20 A A B B n B 2 22 A 22 21 21 A A B . n B 2 23 A 23 22 22 A A B . n B 2 24 G 24 23 23 G G B . n B 2 25 G 25 24 24 G G B . n B 2 26 G 26 25 25 G G B . n B 2 27 G 27 26 26 G G B . n B 2 28 A 28 27 27 A A B . n B 2 29 C 29 28 28 C C B . n B 2 30 G 30 29 29 G G B . n B 2 31 G 31 30 30 G G B . n B 2 32 U 32 31 31 U U B . n B 2 33 C 33 32 32 C C B . n B 2 34 U 34 33 33 U U B . n B 2 35 G 35 34 34 G G B . n B 2 36 PSU 36 35 35 PSU PSU B . n B 2 37 A 37 36 36 A A B . n B 2 38 A 38 37 37 A A B . n B 2 39 A 39 38 38 A A B . n B 2 40 A 40 39 39 A A B . n B 2 41 C 41 40 40 C C B . n B 2 42 C 42 41 41 C C B . n B 2 43 G 43 42 42 G G B . n B 2 44 U 44 43 43 U U B . n B 2 45 U 45 44 44 U U B . n B 2 46 G 46 45 45 G G B . n B 2 47 G 47 46 46 G G B . n B 2 48 C 48 47 47 C C B . n B 2 49 G 49 47 47 G G B A n B 2 50 U 50 47 47 U U B B n B 2 51 A 51 47 47 A A B C n B 2 52 U 52 47 47 U U B D n B 2 53 G 53 47 47 G G B E n B 2 54 C 54 47 47 C C B F n B 2 55 C 55 47 47 C C B G n B 2 56 U 56 47 47 U U B H n B 2 57 U 57 47 47 U U B I n B 2 58 C 58 48 48 C C B . n B 2 59 G 59 49 49 G G B . n B 2 60 C 60 50 50 C C B . n B 2 61 U 61 51 51 U U B . n B 2 62 G 62 52 52 G G B . n B 2 63 G 63 53 53 G G B . n B 2 64 5MU 64 54 54 5MU 5MU B . n B 2 65 PSU 65 55 55 PSU PSU B . n B 2 66 C 66 56 56 C C B . n B 2 67 G 67 57 57 G G B . n B 2 68 1MA 68 58 58 1MA 1MA B . n B 2 69 A 69 59 59 A A B . n B 2 70 U 70 60 60 U U B . n B 2 71 C 71 61 61 C C B . n B 2 72 C 72 62 62 C C B . n B 2 73 A 73 63 63 A A B . n B 2 74 G 74 64 64 G G B . n B 2 75 C 75 65 65 C C B . n B 2 76 C 76 66 66 C C B . n B 2 77 C 77 67 67 C C B . n B 2 78 U 78 68 68 U U B . n B 2 79 G 79 69 69 G G B . n B 2 80 C 80 70 70 C C B . n B 2 81 C 81 71 71 C C B . n B 2 82 C 82 72 72 C C B . n B 2 83 A 83 73 73 A A B . n B 2 84 C 84 74 74 C C B . n B 2 85 C 85 75 ? ? ? B . n B 2 86 A 86 76 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ATP 1 1433 1433 ATP ATP A . D 4 TYE 1 1434 1434 TYE TYE A . E 5 HOH 1 2001 2001 HOH HOH A . E 5 HOH 2 2002 2002 HOH HOH A . E 5 HOH 3 2003 2003 HOH HOH A . E 5 HOH 4 2004 2004 HOH HOH A . E 5 HOH 5 2005 2005 HOH HOH A . E 5 HOH 6 2006 2006 HOH HOH A . E 5 HOH 7 2007 2007 HOH HOH A . E 5 HOH 8 2008 2008 HOH HOH A . F 5 HOH 1 2001 2001 HOH HOH B . F 5 HOH 2 2002 2002 HOH HOH B . F 5 HOH 3 2003 2003 HOH HOH B . F 5 HOH 4 2004 2004 HOH HOH B . F 5 HOH 5 2005 2005 HOH HOH B . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 B C 16 ? N1 ? B C 16 N1 2 1 Y 1 B C 16 ? C2 ? B C 16 C2 3 1 Y 1 B C 16 ? O2 ? B C 16 O2 4 1 Y 1 B C 16 ? N3 ? B C 16 N3 5 1 Y 1 B C 16 ? C4 ? B C 16 C4 6 1 Y 1 B C 16 ? N4 ? B C 16 N4 7 1 Y 1 B C 16 ? C5 ? B C 16 C5 8 1 Y 1 B C 16 ? C6 ? B C 16 C6 9 1 Y 1 B U 47 D N1 ? B U 52 N1 10 1 Y 1 B U 47 D C2 ? B U 52 C2 11 1 Y 1 B U 47 D O2 ? B U 52 O2 12 1 Y 1 B U 47 D N3 ? B U 52 N3 13 1 Y 1 B U 47 D C4 ? B U 52 C4 14 1 Y 1 B U 47 D O4 ? B U 52 O4 15 1 Y 1 B U 47 D C5 ? B U 52 C5 16 1 Y 1 B U 47 D C6 ? B U 52 C6 17 1 Y 1 B C 74 ? "C5'" ? B C 84 "C5'" 18 1 Y 1 B C 74 ? "C4'" ? B C 84 "C4'" 19 1 Y 1 B C 74 ? "O4'" ? B C 84 "O4'" 20 1 Y 1 B C 74 ? "C3'" ? B C 84 "C3'" 21 1 Y 1 B C 74 ? "O3'" ? B C 84 "O3'" 22 1 Y 1 B C 74 ? "C2'" ? B C 84 "C2'" 23 1 Y 1 B C 74 ? "O2'" ? B C 84 "O2'" 24 1 Y 1 B C 74 ? "C1'" ? B C 84 "C1'" 25 1 Y 1 B C 74 ? N1 ? B C 84 N1 26 1 Y 1 B C 74 ? C2 ? B C 84 C2 27 1 Y 1 B C 74 ? O2 ? B C 84 O2 28 1 Y 1 B C 74 ? N3 ? B C 84 N3 29 1 Y 1 B C 74 ? C4 ? B C 84 C4 30 1 Y 1 B C 74 ? N4 ? B C 84 N4 31 1 Y 1 B C 74 ? C5 ? B C 84 C5 32 1 Y 1 B C 74 ? C6 ? B C 84 C6 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.0 ? 1 MOSFLM 'data reduction' . ? 2 SCALA 'data scaling' . ? 3 MOLREP phasing . ? 4 # _cell.entry_id 1H3E _cell.length_a 129.525 _cell.length_b 129.525 _cell.length_c 109.451 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1H3E _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 # _exptl.entry_id 1H3E _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.63 _exptl_crystal.density_percent_sol 65.8 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.00 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;DROP: 5MG/ML TYRRSTT+TRNA(TYR)WITH 5MM TYROSINOL, 10MM MGCL2, 10MM ATP, 50MM HEPES (PH7.0), 0.8M AMMONIUM SULPHATE. RESERVOIR: 1.5-1.6M AMMONIUM SULPHATE, 100MM HEPES (PH7.0)., pH 7.00 ; # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC CCD' _diffrn_detector.pdbx_collection_date 2001-02-15 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9393 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID14-4' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID14-4 _diffrn_source.pdbx_wavelength 0.9393 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 1H3E _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 23.000 _reflns.d_resolution_high 2.900 _reflns.number_obs 22669 _reflns.number_all ? _reflns.percent_possible_obs 94.9 _reflns.pdbx_Rmerge_I_obs 0.07500 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 5.9000 _reflns.B_iso_Wilson_estimate 115.5 _reflns.pdbx_redundancy 3.400 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.90 _reflns_shell.d_res_low 2.98 _reflns_shell.percent_possible_all 63.8 _reflns_shell.Rmerge_I_obs 0.50900 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.500 _reflns_shell.pdbx_redundancy 1.80 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 1H3E _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 22644 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 1216869.71 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 22.99 _refine.ls_d_res_high 2.90 _refine.ls_percent_reflns_obs 94.9 _refine.ls_R_factor_obs 0.219 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.219 _refine.ls_R_factor_R_free 0.269 _refine.ls_R_factor_R_free_error 0.008 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 1149 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 77.3 _refine.aniso_B[1][1] 10.06 _refine.aniso_B[2][2] 10.06 _refine.aniso_B[3][3] -20.13 _refine.aniso_B[1][2] 22.22 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.337167 _refine.solvent_model_param_bsol 46.8415 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;BASES OF TRNA NUCLEOTIDES 16,20,474, 74 OMITTED: NOT VISIBLE IN ELECTRON DENSITY. UNIDENTIFIED MODIFIED BASES IN THE TRNA(E.G ADE-37 IN CHAIN B) HAVE NOT BEEN MODELED. ; _refine.pdbx_starting_model 'T. THERMOPHILUS TYROSYL-TRNA SYNTHETASE PREVIOUSLY DETERMINED BY SIRAS BY SAME AUTHORS' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.entry_id 1H3E _refine_analyze.Luzzati_coordinate_error_obs 0.38 _refine_analyze.Luzzati_sigma_a_obs 0.63 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.47 _refine_analyze.Luzzati_sigma_a_free 0.71 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 3403 _refine_hist.pdbx_number_atoms_nucleic_acid 1762 _refine_hist.pdbx_number_atoms_ligand 43 _refine_hist.number_atoms_solvent 13 _refine_hist.number_atoms_total 5221 _refine_hist.d_res_high 2.90 _refine_hist.d_res_low 22.99 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.007 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.3 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 26.9 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.26 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 1.21 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 2.09 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 5.35 3.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 8.15 4.00 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.90 _refine_ls_shell.d_res_low 3.08 _refine_ls_shell.number_reflns_R_work 2774 _refine_ls_shell.R_factor_R_work 0.367 _refine_ls_shell.percent_reflns_obs 74.7 _refine_ls_shell.R_factor_R_free 0.391 _refine_ls_shell.R_factor_R_free_error 0.031 _refine_ls_shell.percent_reflns_R_free 5.3 _refine_ls_shell.number_reflns_R_free 155 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.pdbx_refine_id _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file 'X-RAY DIFFRACTION' 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 DNA-RNA.PARAM DNA-RNA.TOP 'X-RAY DIFFRACTION' 3 WATER_REP.PARAM WATER.TOP 'X-RAY DIFFRACTION' 4 ION.PARAM ION.TOP # _database_PDB_matrix.entry_id 1H3E _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1H3E _struct.title 'Tyrosyl-tRNA synthetase from Thermus thermophilus complexed with wild-type tRNAtyr(GUA) and with ATP and tyrosinol' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1H3E _struct_keywords.pdbx_keywords LIGASE _struct_keywords.text 'LIGASE, CLASS I AMINOACYL-TRNA SYNTHETASE: ATP + L-TYROSINE + TRNA(TYR) -> AMP + PPI + L-TYROSYL-TRNA(TYR)' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP SYY_THETH 1 ? ? P83453 ? 2 PDB 1H3E 2 ? ? 1H3E ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1H3E A 1 ? 432 ? P83453 1 ? 432 ? 1 432 2 2 1H3E B 1 ? 86 ? 1H3E 1 ? 76 ? 1 76 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 14440 ? 1 MORE -110.8 ? 1 'SSA (A^2)' 55830 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 4_646 y+1,x-1,-z+1 -0.5000000000 0.8660254038 0.0000000000 194.2875000000 0.8660254038 0.5000000000 0.0000000000 -112.1719404252 0.0000000000 0.0000000000 -1.0000000000 109.4510000000 # _struct_biol.id 1 _struct_biol.details ;THE TETRAMER IS ACTUALLY A DIMER OF CHAIN A, EACH ASSOCIATED WITH A MOLECULE OF CHAIN B GIVING RISE TO A TETRAMERIC STATE ; # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 7 ? ARG A 17 ? THR A 7 ARG A 17 1 ? 11 HELX_P HELX_P2 2 PRO A 24 ? GLU A 34 ? PRO A 24 GLU A 34 1 ? 11 HELX_P HELX_P3 3 HIS A 52 ? GLU A 67 ? HIS A 52 GLU A 67 1 ? 16 HELX_P HELX_P4 4 PHE A 79 ? GLY A 84 ? PHE A 79 GLY A 84 1 ? 6 HELX_P HELX_P5 5 THR A 97 ? GLY A 113 ? THR A 97 GLY A 113 1 ? 17 HELX_P HELX_P6 6 ASN A 128 ? GLU A 133 ? ASN A 128 GLU A 133 1 ? 6 HELX_P HELX_P7 7 THR A 136 ? THR A 144 ? THR A 136 THR A 144 1 ? 9 HELX_P HELX_P8 8 SER A 145 ? MET A 147 ? SER A 145 MET A 147 5 ? 3 HELX_P HELX_P9 9 THR A 148 ? LEU A 153 ? THR A 148 LEU A 153 1 ? 6 HELX_P HELX_P10 10 ARG A 155 ? ALA A 164 ? ARG A 155 ALA A 164 1 ? 10 HELX_P HELX_P11 11 SER A 169 ? LEU A 173 ? SER A 169 LEU A 173 5 ? 5 HELX_P HELX_P12 12 LEU A 174 ? ILE A 186 ? LEU A 174 ILE A 186 1 ? 13 HELX_P HELX_P13 13 GLN A 197 ? TYR A 211 ? GLN A 197 TYR A 211 1 ? 15 HELX_P HELX_P14 14 PRO A 246 ? MET A 255 ? PRO A 246 MET A 255 1 ? 10 HELX_P HELX_P15 15 PRO A 258 ? PRO A 260 ? PRO A 258 PRO A 260 5 ? 3 HELX_P HELX_P16 16 LEU A 261 ? THR A 270 ? LEU A 261 THR A 270 1 ? 10 HELX_P HELX_P17 17 GLU A 273 ? GLY A 284 ? GLU A 273 GLY A 284 1 ? 12 HELX_P HELX_P18 18 GLY A 284 ? TYR A 300 ? GLY A 284 TYR A 300 1 ? 17 HELX_P HELX_P19 19 ASP A 310 ? LEU A 317 ? ASP A 310 LEU A 317 1 ? 8 HELX_P HELX_P20 20 ALA A 320 ? PHE A 324 ? ALA A 320 PHE A 324 5 ? 5 HELX_P HELX_P21 21 GLU A 334 ? GLY A 348 ? GLU A 334 GLY A 348 1 ? 15 HELX_P HELX_P22 22 PRO A 360 ? LEU A 364 ? PRO A 360 LEU A 364 5 ? 5 HELX_P HELX_P23 23 VAL A 371 ? ALA A 378 ? VAL A 371 ALA A 378 1 ? 8 HELX_P HELX_P24 24 SER A 383 ? ASN A 393 ? SER A 383 ASN A 393 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B G 35 "O3'" ? ? ? 1_555 B PSU 36 P ? ? B G 34 B PSU 35 1_555 ? ? ? ? ? ? ? 1.599 ? ? covale2 covale both ? B PSU 36 "O3'" ? ? ? 1_555 B A 37 P ? ? B PSU 35 B A 36 1_555 ? ? ? ? ? ? ? 1.605 ? ? covale3 covale both ? B G 63 "O3'" ? ? ? 1_555 B 5MU 64 P ? ? B G 53 B 5MU 54 1_555 ? ? ? ? ? ? ? 1.608 ? ? covale4 covale both ? B 5MU 64 "O3'" ? ? ? 1_555 B PSU 65 P ? ? B 5MU 54 B PSU 55 1_555 ? ? ? ? ? ? ? 1.608 ? ? covale5 covale both ? B PSU 65 "O3'" ? ? ? 1_555 B C 66 P ? ? B PSU 55 B C 56 1_555 ? ? ? ? ? ? ? 1.610 ? ? covale6 covale both ? B G 67 "O3'" ? ? ? 1_555 B 1MA 68 P ? ? B G 57 B 1MA 58 1_555 ? ? ? ? ? ? ? 1.603 ? ? covale7 covale both ? B 1MA 68 "O3'" ? ? ? 1_555 B A 69 P ? ? B 1MA 58 B A 59 1_555 ? ? ? ? ? ? ? 1.605 ? ? hydrog1 hydrog ? ? B G 1 N1 ? ? ? 1_555 B C 82 N3 ? ? B G 1 B C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B G 1 N2 ? ? ? 1_555 B C 82 O2 ? ? B G 1 B C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B G 1 O6 ? ? ? 1_555 B C 82 N4 ? ? B G 1 B C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B G 2 N1 ? ? ? 1_555 B C 81 N3 ? ? B G 2 B C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B G 2 N2 ? ? ? 1_555 B C 81 O2 ? ? B G 2 B C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B G 2 O6 ? ? ? 1_555 B C 81 N4 ? ? B G 2 B C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B G 3 N1 ? ? ? 1_555 B C 80 N3 ? ? B G 3 B C 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B G 3 N2 ? ? ? 1_555 B C 80 O2 ? ? B G 3 B C 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B G 3 O6 ? ? ? 1_555 B C 80 N4 ? ? B G 3 B C 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B C 4 N3 ? ? ? 1_555 B G 79 N1 ? ? B C 4 B G 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B C 4 N4 ? ? ? 1_555 B G 79 O6 ? ? B C 4 B G 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B C 4 O2 ? ? ? 1_555 B G 79 N2 ? ? B C 4 B G 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B A 5 N1 ? ? ? 1_555 B U 78 N3 ? ? B A 5 B U 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B A 5 N6 ? ? ? 1_555 B U 78 O4 ? ? B A 5 B U 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B G 6 N1 ? ? ? 1_555 B C 77 N3 ? ? B G 6 B C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B G 6 N2 ? ? ? 1_555 B C 77 O2 ? ? B G 6 B C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B G 6 O6 ? ? ? 1_555 B C 77 N4 ? ? B G 6 B C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B G 7 N1 ? ? ? 1_555 B C 76 N3 ? ? B G 7 B C 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B G 7 N2 ? ? ? 1_555 B C 76 O2 ? ? B G 7 B C 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B G 7 O6 ? ? ? 1_555 B C 76 N4 ? ? B G 7 B C 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B U 8 N3 ? ? ? 1_555 B A 14 N7 ? ? B U 8 B A 14 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog22 hydrog ? ? B U 8 O2 ? ? ? 1_555 B A 14 N6 ? ? B U 8 B A 14 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog23 hydrog ? ? B U 9 O4 ? ? ? 1_555 B G 13 N2 ? ? B U 9 B G 13 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog24 hydrog ? ? B C 10 N3 ? ? ? 1_555 B G 26 N1 ? ? B C 10 B G 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B C 10 N4 ? ? ? 1_555 B G 26 O6 ? ? B C 10 B G 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B C 10 O2 ? ? ? 1_555 B G 26 N2 ? ? B C 10 B G 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? B C 11 N3 ? ? ? 1_555 B G 25 N1 ? ? B C 11 B G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? B C 11 N4 ? ? ? 1_555 B G 25 O6 ? ? B C 11 B G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? B C 11 O2 ? ? ? 1_555 B G 25 N2 ? ? B C 11 B G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? B C 12 N3 ? ? ? 1_555 B G 24 N1 ? ? B C 12 B G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? B C 12 N4 ? ? ? 1_555 B G 24 O6 ? ? B C 12 B G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? B C 12 O2 ? ? ? 1_555 B G 24 N2 ? ? B C 12 B G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? B G 13 N2 ? ? ? 1_555 B A 23 N7 ? ? B G 13 B A 22 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog34 hydrog ? ? B G 13 N3 ? ? ? 1_555 B A 23 N6 ? ? B G 13 B A 22 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog35 hydrog ? ? B A 14 N6 ? ? ? 1_555 B A 22 N3 ? ? B A 14 B A 21 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog36 hydrog ? ? B G 15 N2 ? ? ? 1_555 B C 20 N3 ? A B G 15 B C 20 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog37 hydrog ? ? B G 15 N1 ? ? ? 1_555 B C 58 O2 ? ? B G 15 B C 48 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog38 hydrog ? ? B G 15 N2 ? ? ? 1_555 B C 58 N3 ? ? B G 15 B C 48 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog39 hydrog ? ? B G 17 N2 ? ? ? 1_555 B PSU 65 O4 ? ? B G 18 B PSU 55 1_555 ? ? ? ? ? ? 'G-PSU MISPAIR' ? ? ? hydrog40 hydrog ? ? B G 18 N1 ? ? ? 1_555 B C 66 N3 ? ? B G 19 B C 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? B G 18 N2 ? ? ? 1_555 B C 66 O2 ? ? B G 19 B C 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? B G 18 O6 ? ? ? 1_555 B C 66 N4 ? ? B G 19 B C 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? B A 21 N6 ? B ? 1_555 B U 56 O2 ? H B A 20 B U 47 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog44 hydrog ? ? B A 21 N7 ? B ? 1_555 B U 56 N3 ? H B A 20 B U 47 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog45 hydrog ? ? B C 20 O2 ? A ? 1_555 B C 58 N4 ? ? B C 20 B C 48 1_555 ? ? ? ? ? ? 'C-C MISPAIR' ? ? ? hydrog46 hydrog ? ? B A 22 N6 ? ? ? 1_555 B U 57 O2 ? I B A 21 B U 47 1_555 ? ? ? ? ? ? 'A-U PAIR' ? ? ? hydrog47 hydrog ? ? B G 27 N1 ? ? ? 1_555 B U 45 O2 ? ? B G 26 B U 44 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog48 hydrog ? ? B G 27 O6 ? ? ? 1_555 B U 45 N3 ? ? B G 26 B U 44 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog49 hydrog ? ? B A 28 N1 ? ? ? 1_555 B U 44 N3 ? ? B A 27 B U 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? B A 28 N6 ? ? ? 1_555 B U 44 O4 ? ? B A 27 B U 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? B C 29 N3 ? ? ? 1_555 B G 43 N1 ? ? B C 28 B G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? B C 29 N4 ? ? ? 1_555 B G 43 O6 ? ? B C 28 B G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? B C 29 O2 ? ? ? 1_555 B G 43 N2 ? ? B C 28 B G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? B G 30 N1 ? ? ? 1_555 B C 42 N3 ? ? B G 29 B C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? B G 30 N2 ? ? ? 1_555 B C 42 O2 ? ? B G 29 B C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? B G 30 O6 ? ? ? 1_555 B C 42 N4 ? ? B G 29 B C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? B G 31 N1 ? ? ? 1_555 B C 41 N3 ? ? B G 30 B C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? B G 31 N2 ? ? ? 1_555 B C 41 O2 ? ? B G 30 B C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? B G 31 O6 ? ? ? 1_555 B C 41 N4 ? ? B G 30 B C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? B U 32 N3 ? ? ? 1_555 B A 40 N1 ? ? B U 31 B A 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? B U 32 O4 ? ? ? 1_555 B A 40 N6 ? ? B U 31 B A 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? B C 33 O2 ? ? ? 1_555 B A 38 N6 ? ? B C 32 B A 37 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog63 hydrog ? ? B C 33 O2 ? ? ? 1_555 B A 39 N6 ? ? B C 32 B A 38 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog64 hydrog ? ? B G 46 N1 ? ? ? 1_555 B C 55 N3 ? G B G 45 B C 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? B G 46 N2 ? ? ? 1_555 B C 55 O2 ? G B G 45 B C 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? B G 46 O6 ? ? ? 1_555 B C 55 N4 ? G B G 45 B C 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? B G 47 N1 ? ? ? 1_555 B C 54 N3 ? F B G 46 B C 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? B G 47 N1 ? ? ? 1_555 B C 55 N3 ? G B G 46 B C 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? B G 47 N2 ? ? ? 1_555 B C 54 O2 ? F B G 46 B C 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? B G 47 N2 ? ? ? 1_555 B C 55 O2 ? G B G 46 B C 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? B G 47 O6 ? ? ? 1_555 B C 54 N4 ? F B G 46 B C 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? B G 47 O6 ? ? ? 1_555 B C 55 N4 ? G B G 46 B C 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? B C 48 N3 ? ? ? 1_555 B G 53 N1 ? E B C 47 B G 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? B C 48 N4 ? ? ? 1_555 B G 53 O6 ? E B C 47 B G 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? B C 48 O2 ? ? ? 1_555 B G 53 N2 ? E B C 47 B G 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? B G 59 N1 ? ? ? 1_555 B C 75 N3 ? ? B G 49 B C 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? B G 59 N2 ? ? ? 1_555 B C 75 O2 ? ? B G 49 B C 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? B G 59 O6 ? ? ? 1_555 B C 75 N4 ? ? B G 49 B C 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? B C 60 N3 ? ? ? 1_555 B G 74 N1 ? ? B C 50 B G 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? B C 60 N4 ? ? ? 1_555 B G 74 O6 ? ? B C 50 B G 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? B C 60 O2 ? ? ? 1_555 B G 74 N2 ? ? B C 50 B G 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? B U 61 N3 ? ? ? 1_555 B A 73 N1 ? ? B U 51 B A 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? B U 61 O4 ? ? ? 1_555 B A 73 N6 ? ? B U 51 B A 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? B G 62 N1 ? ? ? 1_555 B C 72 N3 ? ? B G 52 B C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? B G 62 N2 ? ? ? 1_555 B C 72 O2 ? ? B G 52 B C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? B G 62 O6 ? ? ? 1_555 B C 72 N4 ? ? B G 52 B C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? B G 63 N1 ? ? ? 1_555 B C 71 N3 ? ? B G 53 B C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? B G 63 N2 ? ? ? 1_555 B C 71 O2 ? ? B G 53 B C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? B G 63 O6 ? ? ? 1_555 B C 71 N4 ? ? B G 53 B C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? B 5MU 64 N3 ? ? ? 1_555 B 1MA 68 N7 ? ? B 5MU 54 B 1MA 58 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog91 hydrog ? ? B 5MU 64 O2 ? ? ? 1_555 B 1MA 68 N6 ? ? B 5MU 54 B 1MA 58 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id VAL _struct_mon_prot_cis.label_seq_id 23 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id VAL _struct_mon_prot_cis.auth_seq_id 23 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 24 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 24 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -1.25 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 6 ? AB ? 5 ? AC ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? parallel AA 3 4 ? parallel AA 4 5 ? parallel AA 5 6 ? parallel AB 1 2 ? parallel AB 2 3 ? anti-parallel AB 3 4 ? anti-parallel AB 4 5 ? anti-parallel AC 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 GLU A 21 ? VAL A 23 ? GLU A 21 VAL A 23 AA 2 VAL A 217 ? MET A 221 ? VAL A 217 MET A 221 AA 3 VAL A 190 ? GLY A 194 ? VAL A 190 GLY A 194 AA 4 THR A 39 ? ALA A 44 ? THR A 39 ALA A 44 AA 5 LYS A 71 ? ILE A 76 ? LYS A 71 ILE A 76 AA 6 PHE A 123 ? TYR A 127 ? PHE A 123 TYR A 127 AB 1 GLU A 356 ? ILE A 359 ? GLU A 356 ILE A 359 AB 2 ARG A 424 ? LEU A 430 ? ARG A 424 LEU A 430 AB 3 ARG A 416 ? ARG A 420 ? ARG A 416 ARG A 420 AB 4 LEU A 396 ? LEU A 398 ? LEU A 396 LEU A 398 AB 5 GLU A 401 ? VAL A 402 ? GLU A 401 VAL A 402 AC 1 ILE A 369 ? TRP A 370 ? ILE A 369 TRP A 370 AC 2 GLN A 409 ? VAL A 410 ? GLN A 409 VAL A 410 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N VAL A 23 ? N VAL A 23 O CYS A 218 ? O CYS A 218 AA 2 3 N PHE A 219 ? N PHE A 219 O GLU A 191 ? O GLU A 191 AA 3 4 N VAL A 190 ? N VAL A 190 O THR A 39 ? O THR A 39 AA 4 5 N VAL A 40 ? N VAL A 40 O LYS A 71 ? O LYS A 71 AA 5 6 N LEU A 74 ? N LEU A 74 O GLU A 124 ? O GLU A 124 AB 1 2 N VAL A 357 ? N VAL A 357 O ARG A 427 ? O ARG A 427 AB 2 3 N VAL A 428 ? N VAL A 428 O ARG A 416 ? O ARG A 416 AB 3 4 N GLN A 419 ? N GLN A 419 O ARG A 397 ? O ARG A 397 AB 4 5 N LEU A 398 ? N LEU A 398 O GLU A 401 ? O GLU A 401 AC 1 2 N ILE A 369 ? N ILE A 369 O VAL A 410 ? O VAL A 410 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A ATP 1433 ? 19 'BINDING SITE FOR RESIDUE ATP A 1433' AC2 Software A TYE 1434 ? 10 'BINDING SITE FOR RESIDUE TYE A 1434' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 19 GLY A 43 ? GLY A 43 . ? 1_555 ? 2 AC1 19 ALA A 44 ? ALA A 44 . ? 1_555 ? 3 AC1 19 ASP A 45 ? ASP A 45 . ? 1_555 ? 4 AC1 19 HIS A 52 ? HIS A 52 . ? 1_555 ? 5 AC1 19 GLY A 54 ? GLY A 54 . ? 1_555 ? 6 AC1 19 HIS A 55 ? HIS A 55 . ? 1_555 ? 7 AC1 19 VAL A 58 ? VAL A 58 . ? 1_555 ? 8 AC1 19 ARG A 93 ? ARG A 93 . ? 1_555 ? 9 AC1 19 GLY A 193 ? GLY A 193 . ? 1_555 ? 10 AC1 19 GLY A 194 ? GLY A 194 . ? 1_555 ? 11 AC1 19 GLN A 197 ? GLN A 197 . ? 1_555 ? 12 AC1 19 PRO A 222 ? PRO A 222 . ? 1_555 ? 13 AC1 19 LEU A 223 ? LEU A 223 . ? 1_555 ? 14 AC1 19 LEU A 224 ? LEU A 224 . ? 1_555 ? 15 AC1 19 LYS A 232 ? LYS A 232 . ? 1_555 ? 16 AC1 19 MET A 233 ? MET A 233 . ? 1_555 ? 17 AC1 19 SER A 234 ? SER A 234 . ? 1_555 ? 18 AC1 19 LYS A 235 ? LYS A 235 . ? 1_555 ? 19 AC1 19 TYE D . ? TYE A 1434 . ? 1_555 ? 20 AC2 10 LYS A 41 ? LYS A 41 . ? 1_555 ? 21 AC2 10 GLY A 43 ? GLY A 43 . ? 1_555 ? 22 AC2 10 ASP A 45 ? ASP A 45 . ? 1_555 ? 23 AC2 10 ASP A 85 ? ASP A 85 . ? 1_555 ? 24 AC2 10 TYR A 175 ? TYR A 175 . ? 1_555 ? 25 AC2 10 GLN A 179 ? GLN A 179 . ? 1_555 ? 26 AC2 10 ASP A 182 ? ASP A 182 . ? 1_555 ? 27 AC2 10 GLU A 191 ? GLU A 191 . ? 1_555 ? 28 AC2 10 GLN A 197 ? GLN A 197 . ? 1_555 ? 29 AC2 10 ATP C . ? ATP A 1433 . ? 1_555 ? # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 P _pdbx_validate_rmsd_bond.auth_asym_id_1 B _pdbx_validate_rmsd_bond.auth_comp_id_1 G _pdbx_validate_rmsd_bond.auth_seq_id_1 1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 OP3 _pdbx_validate_rmsd_bond.auth_asym_id_2 B _pdbx_validate_rmsd_bond.auth_comp_id_2 G _pdbx_validate_rmsd_bond.auth_seq_id_2 1 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.518 _pdbx_validate_rmsd_bond.bond_target_value 1.607 _pdbx_validate_rmsd_bond.bond_deviation -0.089 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.012 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 8 ? ? -43.43 -72.03 2 1 GLU A 9 ? ? -37.32 -39.89 3 1 GLU A 20 ? ? -60.44 -71.26 4 1 PRO A 46 ? ? -64.31 63.98 5 1 ASP A 50 ? ? 67.98 138.11 6 1 ARG A 89 ? ? -38.95 137.32 7 1 PRO A 120 ? ? -31.78 -31.77 8 1 ALA A 164 ? ? -65.20 0.27 9 1 PRO A 167 ? ? -38.45 133.09 10 1 ARG A 187 ? ? 39.65 53.94 11 1 ARG A 230 ? ? -102.76 -68.32 12 1 ASN A 239 ? ? -152.99 23.09 13 1 PRO A 260 ? ? -55.10 -4.01 14 1 PRO A 285 ? ? -60.71 -70.83 15 1 GLU A 333 ? ? -67.79 23.11 16 1 GLU A 334 ? ? -134.46 -34.55 17 1 GLU A 352 ? ? -53.84 -71.75 18 1 ALA A 361 ? ? -39.75 -38.43 19 1 ARG A 368 ? ? -119.26 -161.31 20 1 THR A 404 ? ? -150.28 -7.61 21 1 PRO A 415 ? ? -46.04 157.61 22 1 ASP A 423 ? ? -140.37 55.35 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id TYR _pdbx_validate_planes.auth_asym_id A _pdbx_validate_planes.auth_seq_id 300 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.063 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 B PSU 36 B PSU 35 ? U "PSEUDOURIDINE-5'-MONOPHOSPHATE" 2 B 5MU 64 B 5MU 54 ? U ;5-METHYLURIDINE 5'-MONOPHOSPHATE ; 3 B PSU 65 B PSU 55 ? U "PSEUDOURIDINE-5'-MONOPHOSPHATE" 4 B 1MA 68 B 1MA 58 ? A ? # _pdbx_entry_details.entry_id 1H3E _pdbx_entry_details.compound_details ;CATALYTIC ACTIVITY: ATP + L-TYROSINE + TRNA(TYR) = AMP + DIPHOSPHATE + L-TYROSYL-TRNA(TYR). ALTHOUGH THIS PROTEIN IS A CLASS I AMINOACYL-TRNA SYNTHETASE, IT DISPLAYS A CLASS II MODE OF TRNA RECOGNITION. ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A ALA 2 ? A ALA 2 3 1 Y 1 A GLY 3 ? A GLY 3 4 1 Y 1 A THR 4 ? A THR 4 5 1 Y 1 A GLY 5 ? A GLY 5 6 1 Y 1 B C 75 ? B C 85 7 1 Y 1 B A 76 ? B A 86 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 1MA P P N N 1 1MA OP1 O N N 2 1MA OP2 O N N 3 1MA OP3 O N N 4 1MA "O5'" O N N 5 1MA "C5'" C N N 6 1MA "C4'" C N R 7 1MA "O4'" O N N 8 1MA "C3'" C N S 9 1MA "O3'" O N N 10 1MA "C2'" C N R 11 1MA "O2'" O N N 12 1MA "C1'" C N R 13 1MA N9 N Y N 14 1MA C8 C Y N 15 1MA N7 N Y N 16 1MA C5 C Y N 17 1MA C6 C N N 18 1MA N6 N N N 19 1MA N1 N N N 20 1MA CM1 C N N 21 1MA C2 C N N 22 1MA N3 N N N 23 1MA C4 C Y N 24 1MA HOP2 H N N 25 1MA HOP3 H N N 26 1MA "H5'" H N N 27 1MA "H5''" H N N 28 1MA "H4'" H N N 29 1MA "H3'" H N N 30 1MA "HO3'" H N N 31 1MA "H2'" H N N 32 1MA "HO2'" H N N 33 1MA "H1'" H N N 34 1MA H8 H N N 35 1MA HN61 H N N 36 1MA HM11 H N N 37 1MA HM12 H N N 38 1MA HM13 H N N 39 1MA H2 H N N 40 5MU N1 N N N 41 5MU C2 C N N 42 5MU N3 N N N 43 5MU C4 C N N 44 5MU C5 C N N 45 5MU C5M C N N 46 5MU C6 C N N 47 5MU O2 O N N 48 5MU O4 O N N 49 5MU "C1'" C N R 50 5MU "C2'" C N R 51 5MU "O2'" O N N 52 5MU "C3'" C N S 53 5MU "C4'" C N R 54 5MU "O3'" O N N 55 5MU "O4'" O N N 56 5MU "C5'" C N N 57 5MU "O5'" O N N 58 5MU P P N N 59 5MU OP1 O N N 60 5MU OP2 O N N 61 5MU OP3 O N N 62 5MU HN3 H N N 63 5MU H71 H N N 64 5MU H72 H N N 65 5MU H73 H N N 66 5MU H6 H N N 67 5MU "H1'" H N N 68 5MU "H2'" H N N 69 5MU "HO2'" H N N 70 5MU "H3'" H N N 71 5MU "H4'" H N N 72 5MU "HO3'" H N N 73 5MU "H5'" H N N 74 5MU "H5''" H N N 75 5MU HOP2 H N N 76 5MU HOP3 H N N 77 A OP3 O N N 78 A P P N N 79 A OP1 O N N 80 A OP2 O N N 81 A "O5'" O N N 82 A "C5'" C N N 83 A "C4'" C N R 84 A "O4'" O N N 85 A "C3'" C N S 86 A "O3'" O N N 87 A "C2'" C N R 88 A "O2'" O N N 89 A "C1'" C N R 90 A N9 N Y N 91 A C8 C Y N 92 A N7 N Y N 93 A C5 C Y N 94 A C6 C Y N 95 A N6 N N N 96 A N1 N Y N 97 A C2 C Y N 98 A N3 N Y N 99 A C4 C Y N 100 A HOP3 H N N 101 A HOP2 H N N 102 A "H5'" H N N 103 A "H5''" H N N 104 A "H4'" H N N 105 A "H3'" H N N 106 A "HO3'" H N N 107 A "H2'" H N N 108 A "HO2'" H N N 109 A "H1'" H N N 110 A H8 H N N 111 A H61 H N N 112 A H62 H N N 113 A H2 H N N 114 ALA N N N N 115 ALA CA C N S 116 ALA C C N N 117 ALA O O N N 118 ALA CB C N N 119 ALA OXT O N N 120 ALA H H N N 121 ALA H2 H N N 122 ALA HA H N N 123 ALA HB1 H N N 124 ALA HB2 H N N 125 ALA HB3 H N N 126 ALA HXT H N N 127 ARG N N N N 128 ARG CA C N S 129 ARG C C N N 130 ARG O O N N 131 ARG CB C N N 132 ARG CG C N N 133 ARG CD C N N 134 ARG NE N N N 135 ARG CZ C N N 136 ARG NH1 N N N 137 ARG NH2 N N N 138 ARG OXT O N N 139 ARG H H N N 140 ARG H2 H N N 141 ARG HA H N N 142 ARG HB2 H N N 143 ARG HB3 H N N 144 ARG HG2 H N N 145 ARG HG3 H N N 146 ARG HD2 H N N 147 ARG HD3 H N N 148 ARG HE H N N 149 ARG HH11 H N N 150 ARG HH12 H N N 151 ARG HH21 H N N 152 ARG HH22 H N N 153 ARG HXT H N N 154 ASN N N N N 155 ASN CA C N S 156 ASN C C N N 157 ASN O O N N 158 ASN CB C N N 159 ASN CG C N N 160 ASN OD1 O N N 161 ASN ND2 N N N 162 ASN OXT O N N 163 ASN H H N N 164 ASN H2 H N N 165 ASN HA H N N 166 ASN HB2 H N N 167 ASN HB3 H N N 168 ASN HD21 H N N 169 ASN HD22 H N N 170 ASN HXT H N N 171 ASP N N N N 172 ASP CA C N S 173 ASP C C N N 174 ASP O O N N 175 ASP CB C N N 176 ASP CG C N N 177 ASP OD1 O N N 178 ASP OD2 O N N 179 ASP OXT O N N 180 ASP H H N N 181 ASP H2 H N N 182 ASP HA H N N 183 ASP HB2 H N N 184 ASP HB3 H N N 185 ASP HD2 H N N 186 ASP HXT H N N 187 ATP PG P N N 188 ATP O1G O N N 189 ATP O2G O N N 190 ATP O3G O N N 191 ATP PB P N R 192 ATP O1B O N N 193 ATP O2B O N N 194 ATP O3B O N N 195 ATP PA P N R 196 ATP O1A O N N 197 ATP O2A O N N 198 ATP O3A O N N 199 ATP "O5'" O N N 200 ATP "C5'" C N N 201 ATP "C4'" C N R 202 ATP "O4'" O N N 203 ATP "C3'" C N S 204 ATP "O3'" O N N 205 ATP "C2'" C N R 206 ATP "O2'" O N N 207 ATP "C1'" C N R 208 ATP N9 N Y N 209 ATP C8 C Y N 210 ATP N7 N Y N 211 ATP C5 C Y N 212 ATP C6 C Y N 213 ATP N6 N N N 214 ATP N1 N Y N 215 ATP C2 C Y N 216 ATP N3 N Y N 217 ATP C4 C Y N 218 ATP HOG2 H N N 219 ATP HOG3 H N N 220 ATP HOB2 H N N 221 ATP HOA2 H N N 222 ATP "H5'1" H N N 223 ATP "H5'2" H N N 224 ATP "H4'" H N N 225 ATP "H3'" H N N 226 ATP "HO3'" H N N 227 ATP "H2'" H N N 228 ATP "HO2'" H N N 229 ATP "H1'" H N N 230 ATP H8 H N N 231 ATP HN61 H N N 232 ATP HN62 H N N 233 ATP H2 H N N 234 C OP3 O N N 235 C P P N N 236 C OP1 O N N 237 C OP2 O N N 238 C "O5'" O N N 239 C "C5'" C N N 240 C "C4'" C N R 241 C "O4'" O N N 242 C "C3'" C N S 243 C "O3'" O N N 244 C "C2'" C N R 245 C "O2'" O N N 246 C "C1'" C N R 247 C N1 N N N 248 C C2 C N N 249 C O2 O N N 250 C N3 N N N 251 C C4 C N N 252 C N4 N N N 253 C C5 C N N 254 C C6 C N N 255 C HOP3 H N N 256 C HOP2 H N N 257 C "H5'" H N N 258 C "H5''" H N N 259 C "H4'" H N N 260 C "H3'" H N N 261 C "HO3'" H N N 262 C "H2'" H N N 263 C "HO2'" H N N 264 C "H1'" H N N 265 C H41 H N N 266 C H42 H N N 267 C H5 H N N 268 C H6 H N N 269 CYS N N N N 270 CYS CA C N R 271 CYS C C N N 272 CYS O O N N 273 CYS CB C N N 274 CYS SG S N N 275 CYS OXT O N N 276 CYS H H N N 277 CYS H2 H N N 278 CYS HA H N N 279 CYS HB2 H N N 280 CYS HB3 H N N 281 CYS HG H N N 282 CYS HXT H N N 283 G OP3 O N N 284 G P P N N 285 G OP1 O N N 286 G OP2 O N N 287 G "O5'" O N N 288 G "C5'" C N N 289 G "C4'" C N R 290 G "O4'" O N N 291 G "C3'" C N S 292 G "O3'" O N N 293 G "C2'" C N R 294 G "O2'" O N N 295 G "C1'" C N R 296 G N9 N Y N 297 G C8 C Y N 298 G N7 N Y N 299 G C5 C Y N 300 G C6 C N N 301 G O6 O N N 302 G N1 N N N 303 G C2 C N N 304 G N2 N N N 305 G N3 N N N 306 G C4 C Y N 307 G HOP3 H N N 308 G HOP2 H N N 309 G "H5'" H N N 310 G "H5''" H N N 311 G "H4'" H N N 312 G "H3'" H N N 313 G "HO3'" H N N 314 G "H2'" H N N 315 G "HO2'" H N N 316 G "H1'" H N N 317 G H8 H N N 318 G H1 H N N 319 G H21 H N N 320 G H22 H N N 321 GLN N N N N 322 GLN CA C N S 323 GLN C C N N 324 GLN O O N N 325 GLN CB C N N 326 GLN CG C N N 327 GLN CD C N N 328 GLN OE1 O N N 329 GLN NE2 N N N 330 GLN OXT O N N 331 GLN H H N N 332 GLN H2 H N N 333 GLN HA H N N 334 GLN HB2 H N N 335 GLN HB3 H N N 336 GLN HG2 H N N 337 GLN HG3 H N N 338 GLN HE21 H N N 339 GLN HE22 H N N 340 GLN HXT H N N 341 GLU N N N N 342 GLU CA C N S 343 GLU C C N N 344 GLU O O N N 345 GLU CB C N N 346 GLU CG C N N 347 GLU CD C N N 348 GLU OE1 O N N 349 GLU OE2 O N N 350 GLU OXT O N N 351 GLU H H N N 352 GLU H2 H N N 353 GLU HA H N N 354 GLU HB2 H N N 355 GLU HB3 H N N 356 GLU HG2 H N N 357 GLU HG3 H N N 358 GLU HE2 H N N 359 GLU HXT H N N 360 GLY N N N N 361 GLY CA C N N 362 GLY C C N N 363 GLY O O N N 364 GLY OXT O N N 365 GLY H H N N 366 GLY H2 H N N 367 GLY HA2 H N N 368 GLY HA3 H N N 369 GLY HXT H N N 370 HIS N N N N 371 HIS CA C N S 372 HIS C C N N 373 HIS O O N N 374 HIS CB C N N 375 HIS CG C Y N 376 HIS ND1 N Y N 377 HIS CD2 C Y N 378 HIS CE1 C Y N 379 HIS NE2 N Y N 380 HIS OXT O N N 381 HIS H H N N 382 HIS H2 H N N 383 HIS HA H N N 384 HIS HB2 H N N 385 HIS HB3 H N N 386 HIS HD1 H N N 387 HIS HD2 H N N 388 HIS HE1 H N N 389 HIS HE2 H N N 390 HIS HXT H N N 391 HOH O O N N 392 HOH H1 H N N 393 HOH H2 H N N 394 ILE N N N N 395 ILE CA C N S 396 ILE C C N N 397 ILE O O N N 398 ILE CB C N S 399 ILE CG1 C N N 400 ILE CG2 C N N 401 ILE CD1 C N N 402 ILE OXT O N N 403 ILE H H N N 404 ILE H2 H N N 405 ILE HA H N N 406 ILE HB H N N 407 ILE HG12 H N N 408 ILE HG13 H N N 409 ILE HG21 H N N 410 ILE HG22 H N N 411 ILE HG23 H N N 412 ILE HD11 H N N 413 ILE HD12 H N N 414 ILE HD13 H N N 415 ILE HXT H N N 416 LEU N N N N 417 LEU CA C N S 418 LEU C C N N 419 LEU O O N N 420 LEU CB C N N 421 LEU CG C N N 422 LEU CD1 C N N 423 LEU CD2 C N N 424 LEU OXT O N N 425 LEU H H N N 426 LEU H2 H N N 427 LEU HA H N N 428 LEU HB2 H N N 429 LEU HB3 H N N 430 LEU HG H N N 431 LEU HD11 H N N 432 LEU HD12 H N N 433 LEU HD13 H N N 434 LEU HD21 H N N 435 LEU HD22 H N N 436 LEU HD23 H N N 437 LEU HXT H N N 438 LYS N N N N 439 LYS CA C N S 440 LYS C C N N 441 LYS O O N N 442 LYS CB C N N 443 LYS CG C N N 444 LYS CD C N N 445 LYS CE C N N 446 LYS NZ N N N 447 LYS OXT O N N 448 LYS H H N N 449 LYS H2 H N N 450 LYS HA H N N 451 LYS HB2 H N N 452 LYS HB3 H N N 453 LYS HG2 H N N 454 LYS HG3 H N N 455 LYS HD2 H N N 456 LYS HD3 H N N 457 LYS HE2 H N N 458 LYS HE3 H N N 459 LYS HZ1 H N N 460 LYS HZ2 H N N 461 LYS HZ3 H N N 462 LYS HXT H N N 463 MET N N N N 464 MET CA C N S 465 MET C C N N 466 MET O O N N 467 MET CB C N N 468 MET CG C N N 469 MET SD S N N 470 MET CE C N N 471 MET OXT O N N 472 MET H H N N 473 MET H2 H N N 474 MET HA H N N 475 MET HB2 H N N 476 MET HB3 H N N 477 MET HG2 H N N 478 MET HG3 H N N 479 MET HE1 H N N 480 MET HE2 H N N 481 MET HE3 H N N 482 MET HXT H N N 483 PHE N N N N 484 PHE CA C N S 485 PHE C C N N 486 PHE O O N N 487 PHE CB C N N 488 PHE CG C Y N 489 PHE CD1 C Y N 490 PHE CD2 C Y N 491 PHE CE1 C Y N 492 PHE CE2 C Y N 493 PHE CZ C Y N 494 PHE OXT O N N 495 PHE H H N N 496 PHE H2 H N N 497 PHE HA H N N 498 PHE HB2 H N N 499 PHE HB3 H N N 500 PHE HD1 H N N 501 PHE HD2 H N N 502 PHE HE1 H N N 503 PHE HE2 H N N 504 PHE HZ H N N 505 PHE HXT H N N 506 PRO N N N N 507 PRO CA C N S 508 PRO C C N N 509 PRO O O N N 510 PRO CB C N N 511 PRO CG C N N 512 PRO CD C N N 513 PRO OXT O N N 514 PRO H H N N 515 PRO HA H N N 516 PRO HB2 H N N 517 PRO HB3 H N N 518 PRO HG2 H N N 519 PRO HG3 H N N 520 PRO HD2 H N N 521 PRO HD3 H N N 522 PRO HXT H N N 523 PSU N1 N N N 524 PSU C2 C N N 525 PSU N3 N N N 526 PSU C4 C N N 527 PSU C5 C N N 528 PSU C6 C N N 529 PSU O2 O N N 530 PSU O4 O N N 531 PSU "C1'" C N S 532 PSU "C2'" C N R 533 PSU "O2'" O N N 534 PSU "C3'" C N S 535 PSU "C4'" C N R 536 PSU "O3'" O N N 537 PSU "O4'" O N N 538 PSU "C5'" C N N 539 PSU "O5'" O N N 540 PSU P P N N 541 PSU OP1 O N N 542 PSU OP2 O N N 543 PSU OP3 O N N 544 PSU HN1 H N N 545 PSU HN3 H N N 546 PSU H6 H N N 547 PSU "H1'" H N N 548 PSU "H2'" H N N 549 PSU "HO2'" H N N 550 PSU "H3'" H N N 551 PSU "H4'" H N N 552 PSU "HO3'" H N N 553 PSU "H5'" H N N 554 PSU "H5''" H N N 555 PSU HOP2 H N N 556 PSU HOP3 H N N 557 SER N N N N 558 SER CA C N S 559 SER C C N N 560 SER O O N N 561 SER CB C N N 562 SER OG O N N 563 SER OXT O N N 564 SER H H N N 565 SER H2 H N N 566 SER HA H N N 567 SER HB2 H N N 568 SER HB3 H N N 569 SER HG H N N 570 SER HXT H N N 571 THR N N N N 572 THR CA C N S 573 THR C C N N 574 THR O O N N 575 THR CB C N R 576 THR OG1 O N N 577 THR CG2 C N N 578 THR OXT O N N 579 THR H H N N 580 THR H2 H N N 581 THR HA H N N 582 THR HB H N N 583 THR HG1 H N N 584 THR HG21 H N N 585 THR HG22 H N N 586 THR HG23 H N N 587 THR HXT H N N 588 TRP N N N N 589 TRP CA C N S 590 TRP C C N N 591 TRP O O N N 592 TRP CB C N N 593 TRP CG C Y N 594 TRP CD1 C Y N 595 TRP CD2 C Y N 596 TRP NE1 N Y N 597 TRP CE2 C Y N 598 TRP CE3 C Y N 599 TRP CZ2 C Y N 600 TRP CZ3 C Y N 601 TRP CH2 C Y N 602 TRP OXT O N N 603 TRP H H N N 604 TRP H2 H N N 605 TRP HA H N N 606 TRP HB2 H N N 607 TRP HB3 H N N 608 TRP HD1 H N N 609 TRP HE1 H N N 610 TRP HE3 H N N 611 TRP HZ2 H N N 612 TRP HZ3 H N N 613 TRP HH2 H N N 614 TRP HXT H N N 615 TYE C C N N 616 TYE N N N N 617 TYE O O N N 618 TYE CA C N S 619 TYE CB C N N 620 TYE CG C Y N 621 TYE OH O N N 622 TYE CZ C Y N 623 TYE CD1 C Y N 624 TYE CD2 C Y N 625 TYE CE1 C Y N 626 TYE CE2 C Y N 627 TYE HC1 H N N 628 TYE HC2 H N N 629 TYE H H N N 630 TYE H2 H N N 631 TYE HO H N N 632 TYE HA H N N 633 TYE HB H N N 634 TYE HBA H N N 635 TYE HOH H N N 636 TYE HD1 H N N 637 TYE HD2 H N N 638 TYE HE1 H N N 639 TYE HE2 H N N 640 TYR N N N N 641 TYR CA C N S 642 TYR C C N N 643 TYR O O N N 644 TYR CB C N N 645 TYR CG C Y N 646 TYR CD1 C Y N 647 TYR CD2 C Y N 648 TYR CE1 C Y N 649 TYR CE2 C Y N 650 TYR CZ C Y N 651 TYR OH O N N 652 TYR OXT O N N 653 TYR H H N N 654 TYR H2 H N N 655 TYR HA H N N 656 TYR HB2 H N N 657 TYR HB3 H N N 658 TYR HD1 H N N 659 TYR HD2 H N N 660 TYR HE1 H N N 661 TYR HE2 H N N 662 TYR HH H N N 663 TYR HXT H N N 664 U OP3 O N N 665 U P P N N 666 U OP1 O N N 667 U OP2 O N N 668 U "O5'" O N N 669 U "C5'" C N N 670 U "C4'" C N R 671 U "O4'" O N N 672 U "C3'" C N S 673 U "O3'" O N N 674 U "C2'" C N R 675 U "O2'" O N N 676 U "C1'" C N R 677 U N1 N N N 678 U C2 C N N 679 U O2 O N N 680 U N3 N N N 681 U C4 C N N 682 U O4 O N N 683 U C5 C N N 684 U C6 C N N 685 U HOP3 H N N 686 U HOP2 H N N 687 U "H5'" H N N 688 U "H5''" H N N 689 U "H4'" H N N 690 U "H3'" H N N 691 U "HO3'" H N N 692 U "H2'" H N N 693 U "HO2'" H N N 694 U "H1'" H N N 695 U H3 H N N 696 U H5 H N N 697 U H6 H N N 698 VAL N N N N 699 VAL CA C N S 700 VAL C C N N 701 VAL O O N N 702 VAL CB C N N 703 VAL CG1 C N N 704 VAL CG2 C N N 705 VAL OXT O N N 706 VAL H H N N 707 VAL H2 H N N 708 VAL HA H N N 709 VAL HB H N N 710 VAL HG11 H N N 711 VAL HG12 H N N 712 VAL HG13 H N N 713 VAL HG21 H N N 714 VAL HG22 H N N 715 VAL HG23 H N N 716 VAL HXT H N N 717 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 1MA P OP1 doub N N 1 1MA P OP2 sing N N 2 1MA P OP3 sing N N 3 1MA P "O5'" sing N N 4 1MA OP2 HOP2 sing N N 5 1MA OP3 HOP3 sing N N 6 1MA "O5'" "C5'" sing N N 7 1MA "C5'" "C4'" sing N N 8 1MA "C5'" "H5'" sing N N 9 1MA "C5'" "H5''" sing N N 10 1MA "C4'" "O4'" sing N N 11 1MA "C4'" "C3'" sing N N 12 1MA "C4'" "H4'" sing N N 13 1MA "O4'" "C1'" sing N N 14 1MA "C3'" "O3'" sing N N 15 1MA "C3'" "C2'" sing N N 16 1MA "C3'" "H3'" sing N N 17 1MA "O3'" "HO3'" sing N N 18 1MA "C2'" "O2'" sing N N 19 1MA "C2'" "C1'" sing N N 20 1MA "C2'" "H2'" sing N N 21 1MA "O2'" "HO2'" sing N N 22 1MA "C1'" N9 sing N N 23 1MA "C1'" "H1'" sing N N 24 1MA N9 C8 sing Y N 25 1MA N9 C4 sing Y N 26 1MA C8 N7 doub Y N 27 1MA C8 H8 sing N N 28 1MA N7 C5 sing Y N 29 1MA C5 C6 sing N N 30 1MA C5 C4 doub Y N 31 1MA C6 N6 doub N N 32 1MA C6 N1 sing N N 33 1MA N6 HN61 sing N N 34 1MA N1 CM1 sing N N 35 1MA N1 C2 sing N N 36 1MA CM1 HM11 sing N N 37 1MA CM1 HM12 sing N N 38 1MA CM1 HM13 sing N N 39 1MA C2 N3 doub N N 40 1MA C2 H2 sing N N 41 1MA N3 C4 sing N N 42 5MU N1 C2 sing N N 43 5MU N1 C6 sing N N 44 5MU N1 "C1'" sing N N 45 5MU C2 N3 sing N N 46 5MU C2 O2 doub N N 47 5MU N3 C4 sing N N 48 5MU N3 HN3 sing N N 49 5MU C4 C5 sing N N 50 5MU C4 O4 doub N N 51 5MU C5 C5M sing N N 52 5MU C5 C6 doub N N 53 5MU C5M H71 sing N N 54 5MU C5M H72 sing N N 55 5MU C5M H73 sing N N 56 5MU C6 H6 sing N N 57 5MU "C1'" "C2'" sing N N 58 5MU "C1'" "O4'" sing N N 59 5MU "C1'" "H1'" sing N N 60 5MU "C2'" "O2'" sing N N 61 5MU "C2'" "C3'" sing N N 62 5MU "C2'" "H2'" sing N N 63 5MU "O2'" "HO2'" sing N N 64 5MU "C3'" "C4'" sing N N 65 5MU "C3'" "O3'" sing N N 66 5MU "C3'" "H3'" sing N N 67 5MU "C4'" "O4'" sing N N 68 5MU "C4'" "C5'" sing N N 69 5MU "C4'" "H4'" sing N N 70 5MU "O3'" "HO3'" sing N N 71 5MU "C5'" "O5'" sing N N 72 5MU "C5'" "H5'" sing N N 73 5MU "C5'" "H5''" sing N N 74 5MU "O5'" P sing N N 75 5MU P OP1 doub N N 76 5MU P OP2 sing N N 77 5MU P OP3 sing N N 78 5MU OP2 HOP2 sing N N 79 5MU OP3 HOP3 sing N N 80 A OP3 P sing N N 81 A OP3 HOP3 sing N N 82 A P OP1 doub N N 83 A P OP2 sing N N 84 A P "O5'" sing N N 85 A OP2 HOP2 sing N N 86 A "O5'" "C5'" sing N N 87 A "C5'" "C4'" sing N N 88 A "C5'" "H5'" sing N N 89 A "C5'" "H5''" sing N N 90 A "C4'" "O4'" sing N N 91 A "C4'" "C3'" sing N N 92 A "C4'" "H4'" sing N N 93 A "O4'" "C1'" sing N N 94 A "C3'" "O3'" sing N N 95 A "C3'" "C2'" sing N N 96 A "C3'" "H3'" sing N N 97 A "O3'" "HO3'" sing N N 98 A "C2'" "O2'" sing N N 99 A "C2'" "C1'" sing N N 100 A "C2'" "H2'" sing N N 101 A "O2'" "HO2'" sing N N 102 A "C1'" N9 sing N N 103 A "C1'" "H1'" sing N N 104 A N9 C8 sing Y N 105 A N9 C4 sing Y N 106 A C8 N7 doub Y N 107 A C8 H8 sing N N 108 A N7 C5 sing Y N 109 A C5 C6 sing Y N 110 A C5 C4 doub Y N 111 A C6 N6 sing N N 112 A C6 N1 doub Y N 113 A N6 H61 sing N N 114 A N6 H62 sing N N 115 A N1 C2 sing Y N 116 A C2 N3 doub Y N 117 A C2 H2 sing N N 118 A N3 C4 sing Y N 119 ALA N CA sing N N 120 ALA N H sing N N 121 ALA N H2 sing N N 122 ALA CA C sing N N 123 ALA CA CB sing N N 124 ALA CA HA sing N N 125 ALA C O doub N N 126 ALA C OXT sing N N 127 ALA CB HB1 sing N N 128 ALA CB HB2 sing N N 129 ALA CB HB3 sing N N 130 ALA OXT HXT sing N N 131 ARG N CA sing N N 132 ARG N H sing N N 133 ARG N H2 sing N N 134 ARG CA C sing N N 135 ARG CA CB sing N N 136 ARG CA HA sing N N 137 ARG C O doub N N 138 ARG C OXT sing N N 139 ARG CB CG sing N N 140 ARG CB HB2 sing N N 141 ARG CB HB3 sing N N 142 ARG CG CD sing N N 143 ARG CG HG2 sing N N 144 ARG CG HG3 sing N N 145 ARG CD NE sing N N 146 ARG CD HD2 sing N N 147 ARG CD HD3 sing N N 148 ARG NE CZ sing N N 149 ARG NE HE sing N N 150 ARG CZ NH1 sing N N 151 ARG CZ NH2 doub N N 152 ARG NH1 HH11 sing N N 153 ARG NH1 HH12 sing N N 154 ARG NH2 HH21 sing N N 155 ARG NH2 HH22 sing N N 156 ARG OXT HXT sing N N 157 ASN N CA sing N N 158 ASN N H sing N N 159 ASN N H2 sing N N 160 ASN CA C sing N N 161 ASN CA CB sing N N 162 ASN CA HA sing N N 163 ASN C O doub N N 164 ASN C OXT sing N N 165 ASN CB CG sing N N 166 ASN CB HB2 sing N N 167 ASN CB HB3 sing N N 168 ASN CG OD1 doub N N 169 ASN CG ND2 sing N N 170 ASN ND2 HD21 sing N N 171 ASN ND2 HD22 sing N N 172 ASN OXT HXT sing N N 173 ASP N CA sing N N 174 ASP N H sing N N 175 ASP N H2 sing N N 176 ASP CA C sing N N 177 ASP CA CB sing N N 178 ASP CA HA sing N N 179 ASP C O doub N N 180 ASP C OXT sing N N 181 ASP CB CG sing N N 182 ASP CB HB2 sing N N 183 ASP CB HB3 sing N N 184 ASP CG OD1 doub N N 185 ASP CG OD2 sing N N 186 ASP OD2 HD2 sing N N 187 ASP OXT HXT sing N N 188 ATP PG O1G doub N N 189 ATP PG O2G sing N N 190 ATP PG O3G sing N N 191 ATP PG O3B sing N N 192 ATP O2G HOG2 sing N N 193 ATP O3G HOG3 sing N N 194 ATP PB O1B doub N N 195 ATP PB O2B sing N N 196 ATP PB O3B sing N N 197 ATP PB O3A sing N N 198 ATP O2B HOB2 sing N N 199 ATP PA O1A doub N N 200 ATP PA O2A sing N N 201 ATP PA O3A sing N N 202 ATP PA "O5'" sing N N 203 ATP O2A HOA2 sing N N 204 ATP "O5'" "C5'" sing N N 205 ATP "C5'" "C4'" sing N N 206 ATP "C5'" "H5'1" sing N N 207 ATP "C5'" "H5'2" sing N N 208 ATP "C4'" "O4'" sing N N 209 ATP "C4'" "C3'" sing N N 210 ATP "C4'" "H4'" sing N N 211 ATP "O4'" "C1'" sing N N 212 ATP "C3'" "O3'" sing N N 213 ATP "C3'" "C2'" sing N N 214 ATP "C3'" "H3'" sing N N 215 ATP "O3'" "HO3'" sing N N 216 ATP "C2'" "O2'" sing N N 217 ATP "C2'" "C1'" sing N N 218 ATP "C2'" "H2'" sing N N 219 ATP "O2'" "HO2'" sing N N 220 ATP "C1'" N9 sing N N 221 ATP "C1'" "H1'" sing N N 222 ATP N9 C8 sing Y N 223 ATP N9 C4 sing Y N 224 ATP C8 N7 doub Y N 225 ATP C8 H8 sing N N 226 ATP N7 C5 sing Y N 227 ATP C5 C6 sing Y N 228 ATP C5 C4 doub Y N 229 ATP C6 N6 sing N N 230 ATP C6 N1 doub Y N 231 ATP N6 HN61 sing N N 232 ATP N6 HN62 sing N N 233 ATP N1 C2 sing Y N 234 ATP C2 N3 doub Y N 235 ATP C2 H2 sing N N 236 ATP N3 C4 sing Y N 237 C OP3 P sing N N 238 C OP3 HOP3 sing N N 239 C P OP1 doub N N 240 C P OP2 sing N N 241 C P "O5'" sing N N 242 C OP2 HOP2 sing N N 243 C "O5'" "C5'" sing N N 244 C "C5'" "C4'" sing N N 245 C "C5'" "H5'" sing N N 246 C "C5'" "H5''" sing N N 247 C "C4'" "O4'" sing N N 248 C "C4'" "C3'" sing N N 249 C "C4'" "H4'" sing N N 250 C "O4'" "C1'" sing N N 251 C "C3'" "O3'" sing N N 252 C "C3'" "C2'" sing N N 253 C "C3'" "H3'" sing N N 254 C "O3'" "HO3'" sing N N 255 C "C2'" "O2'" sing N N 256 C "C2'" "C1'" sing N N 257 C "C2'" "H2'" sing N N 258 C "O2'" "HO2'" sing N N 259 C "C1'" N1 sing N N 260 C "C1'" "H1'" sing N N 261 C N1 C2 sing N N 262 C N1 C6 sing N N 263 C C2 O2 doub N N 264 C C2 N3 sing N N 265 C N3 C4 doub N N 266 C C4 N4 sing N N 267 C C4 C5 sing N N 268 C N4 H41 sing N N 269 C N4 H42 sing N N 270 C C5 C6 doub N N 271 C C5 H5 sing N N 272 C C6 H6 sing N N 273 CYS N CA sing N N 274 CYS N H sing N N 275 CYS N H2 sing N N 276 CYS CA C sing N N 277 CYS CA CB sing N N 278 CYS CA HA sing N N 279 CYS C O doub N N 280 CYS C OXT sing N N 281 CYS CB SG sing N N 282 CYS CB HB2 sing N N 283 CYS CB HB3 sing N N 284 CYS SG HG sing N N 285 CYS OXT HXT sing N N 286 G OP3 P sing N N 287 G OP3 HOP3 sing N N 288 G P OP1 doub N N 289 G P OP2 sing N N 290 G P "O5'" sing N N 291 G OP2 HOP2 sing N N 292 G "O5'" "C5'" sing N N 293 G "C5'" "C4'" sing N N 294 G "C5'" "H5'" sing N N 295 G "C5'" "H5''" sing N N 296 G "C4'" "O4'" sing N N 297 G "C4'" "C3'" sing N N 298 G "C4'" "H4'" sing N N 299 G "O4'" "C1'" sing N N 300 G "C3'" "O3'" sing N N 301 G "C3'" "C2'" sing N N 302 G "C3'" "H3'" sing N N 303 G "O3'" "HO3'" sing N N 304 G "C2'" "O2'" sing N N 305 G "C2'" "C1'" sing N N 306 G "C2'" "H2'" sing N N 307 G "O2'" "HO2'" sing N N 308 G "C1'" N9 sing N N 309 G "C1'" "H1'" sing N N 310 G N9 C8 sing Y N 311 G N9 C4 sing Y N 312 G C8 N7 doub Y N 313 G C8 H8 sing N N 314 G N7 C5 sing Y N 315 G C5 C6 sing N N 316 G C5 C4 doub Y N 317 G C6 O6 doub N N 318 G C6 N1 sing N N 319 G N1 C2 sing N N 320 G N1 H1 sing N N 321 G C2 N2 sing N N 322 G C2 N3 doub N N 323 G N2 H21 sing N N 324 G N2 H22 sing N N 325 G N3 C4 sing N N 326 GLN N CA sing N N 327 GLN N H sing N N 328 GLN N H2 sing N N 329 GLN CA C sing N N 330 GLN CA CB sing N N 331 GLN CA HA sing N N 332 GLN C O doub N N 333 GLN C OXT sing N N 334 GLN CB CG sing N N 335 GLN CB HB2 sing N N 336 GLN CB HB3 sing N N 337 GLN CG CD sing N N 338 GLN CG HG2 sing N N 339 GLN CG HG3 sing N N 340 GLN CD OE1 doub N N 341 GLN CD NE2 sing N N 342 GLN NE2 HE21 sing N N 343 GLN NE2 HE22 sing N N 344 GLN OXT HXT sing N N 345 GLU N CA sing N N 346 GLU N H sing N N 347 GLU N H2 sing N N 348 GLU CA C sing N N 349 GLU CA CB sing N N 350 GLU CA HA sing N N 351 GLU C O doub N N 352 GLU C OXT sing N N 353 GLU CB CG sing N N 354 GLU CB HB2 sing N N 355 GLU CB HB3 sing N N 356 GLU CG CD sing N N 357 GLU CG HG2 sing N N 358 GLU CG HG3 sing N N 359 GLU CD OE1 doub N N 360 GLU CD OE2 sing N N 361 GLU OE2 HE2 sing N N 362 GLU OXT HXT sing N N 363 GLY N CA sing N N 364 GLY N H sing N N 365 GLY N H2 sing N N 366 GLY CA C sing N N 367 GLY CA HA2 sing N N 368 GLY CA HA3 sing N N 369 GLY C O doub N N 370 GLY C OXT sing N N 371 GLY OXT HXT sing N N 372 HIS N CA sing N N 373 HIS N H sing N N 374 HIS N H2 sing N N 375 HIS CA C sing N N 376 HIS CA CB sing N N 377 HIS CA HA sing N N 378 HIS C O doub N N 379 HIS C OXT sing N N 380 HIS CB CG sing N N 381 HIS CB HB2 sing N N 382 HIS CB HB3 sing N N 383 HIS CG ND1 sing Y N 384 HIS CG CD2 doub Y N 385 HIS ND1 CE1 doub Y N 386 HIS ND1 HD1 sing N N 387 HIS CD2 NE2 sing Y N 388 HIS CD2 HD2 sing N N 389 HIS CE1 NE2 sing Y N 390 HIS CE1 HE1 sing N N 391 HIS NE2 HE2 sing N N 392 HIS OXT HXT sing N N 393 HOH O H1 sing N N 394 HOH O H2 sing N N 395 ILE N CA sing N N 396 ILE N H sing N N 397 ILE N H2 sing N N 398 ILE CA C sing N N 399 ILE CA CB sing N N 400 ILE CA HA sing N N 401 ILE C O doub N N 402 ILE C OXT sing N N 403 ILE CB CG1 sing N N 404 ILE CB CG2 sing N N 405 ILE CB HB sing N N 406 ILE CG1 CD1 sing N N 407 ILE CG1 HG12 sing N N 408 ILE CG1 HG13 sing N N 409 ILE CG2 HG21 sing N N 410 ILE CG2 HG22 sing N N 411 ILE CG2 HG23 sing N N 412 ILE CD1 HD11 sing N N 413 ILE CD1 HD12 sing N N 414 ILE CD1 HD13 sing N N 415 ILE OXT HXT sing N N 416 LEU N CA sing N N 417 LEU N H sing N N 418 LEU N H2 sing N N 419 LEU CA C sing N N 420 LEU CA CB sing N N 421 LEU CA HA sing N N 422 LEU C O doub N N 423 LEU C OXT sing N N 424 LEU CB CG sing N N 425 LEU CB HB2 sing N N 426 LEU CB HB3 sing N N 427 LEU CG CD1 sing N N 428 LEU CG CD2 sing N N 429 LEU CG HG sing N N 430 LEU CD1 HD11 sing N N 431 LEU CD1 HD12 sing N N 432 LEU CD1 HD13 sing N N 433 LEU CD2 HD21 sing N N 434 LEU CD2 HD22 sing N N 435 LEU CD2 HD23 sing N N 436 LEU OXT HXT sing N N 437 LYS N CA sing N N 438 LYS N H sing N N 439 LYS N H2 sing N N 440 LYS CA C sing N N 441 LYS CA CB sing N N 442 LYS CA HA sing N N 443 LYS C O doub N N 444 LYS C OXT sing N N 445 LYS CB CG sing N N 446 LYS CB HB2 sing N N 447 LYS CB HB3 sing N N 448 LYS CG CD sing N N 449 LYS CG HG2 sing N N 450 LYS CG HG3 sing N N 451 LYS CD CE sing N N 452 LYS CD HD2 sing N N 453 LYS CD HD3 sing N N 454 LYS CE NZ sing N N 455 LYS CE HE2 sing N N 456 LYS CE HE3 sing N N 457 LYS NZ HZ1 sing N N 458 LYS NZ HZ2 sing N N 459 LYS NZ HZ3 sing N N 460 LYS OXT HXT sing N N 461 MET N CA sing N N 462 MET N H sing N N 463 MET N H2 sing N N 464 MET CA C sing N N 465 MET CA CB sing N N 466 MET CA HA sing N N 467 MET C O doub N N 468 MET C OXT sing N N 469 MET CB CG sing N N 470 MET CB HB2 sing N N 471 MET CB HB3 sing N N 472 MET CG SD sing N N 473 MET CG HG2 sing N N 474 MET CG HG3 sing N N 475 MET SD CE sing N N 476 MET CE HE1 sing N N 477 MET CE HE2 sing N N 478 MET CE HE3 sing N N 479 MET OXT HXT sing N N 480 PHE N CA sing N N 481 PHE N H sing N N 482 PHE N H2 sing N N 483 PHE CA C sing N N 484 PHE CA CB sing N N 485 PHE CA HA sing N N 486 PHE C O doub N N 487 PHE C OXT sing N N 488 PHE CB CG sing N N 489 PHE CB HB2 sing N N 490 PHE CB HB3 sing N N 491 PHE CG CD1 doub Y N 492 PHE CG CD2 sing Y N 493 PHE CD1 CE1 sing Y N 494 PHE CD1 HD1 sing N N 495 PHE CD2 CE2 doub Y N 496 PHE CD2 HD2 sing N N 497 PHE CE1 CZ doub Y N 498 PHE CE1 HE1 sing N N 499 PHE CE2 CZ sing Y N 500 PHE CE2 HE2 sing N N 501 PHE CZ HZ sing N N 502 PHE OXT HXT sing N N 503 PRO N CA sing N N 504 PRO N CD sing N N 505 PRO N H sing N N 506 PRO CA C sing N N 507 PRO CA CB sing N N 508 PRO CA HA sing N N 509 PRO C O doub N N 510 PRO C OXT sing N N 511 PRO CB CG sing N N 512 PRO CB HB2 sing N N 513 PRO CB HB3 sing N N 514 PRO CG CD sing N N 515 PRO CG HG2 sing N N 516 PRO CG HG3 sing N N 517 PRO CD HD2 sing N N 518 PRO CD HD3 sing N N 519 PRO OXT HXT sing N N 520 PSU N1 C2 sing N N 521 PSU N1 C6 sing N N 522 PSU N1 HN1 sing N N 523 PSU C2 N3 sing N N 524 PSU C2 O2 doub N N 525 PSU N3 C4 sing N N 526 PSU N3 HN3 sing N N 527 PSU C4 C5 sing N N 528 PSU C4 O4 doub N N 529 PSU C5 C6 doub N N 530 PSU C5 "C1'" sing N N 531 PSU C6 H6 sing N N 532 PSU "C1'" "C2'" sing N N 533 PSU "C1'" "O4'" sing N N 534 PSU "C1'" "H1'" sing N N 535 PSU "C2'" "O2'" sing N N 536 PSU "C2'" "C3'" sing N N 537 PSU "C2'" "H2'" sing N N 538 PSU "O2'" "HO2'" sing N N 539 PSU "C3'" "C4'" sing N N 540 PSU "C3'" "O3'" sing N N 541 PSU "C3'" "H3'" sing N N 542 PSU "C4'" "O4'" sing N N 543 PSU "C4'" "C5'" sing N N 544 PSU "C4'" "H4'" sing N N 545 PSU "O3'" "HO3'" sing N N 546 PSU "C5'" "O5'" sing N N 547 PSU "C5'" "H5'" sing N N 548 PSU "C5'" "H5''" sing N N 549 PSU "O5'" P sing N N 550 PSU P OP1 doub N N 551 PSU P OP2 sing N N 552 PSU P OP3 sing N N 553 PSU OP2 HOP2 sing N N 554 PSU OP3 HOP3 sing N N 555 SER N CA sing N N 556 SER N H sing N N 557 SER N H2 sing N N 558 SER CA C sing N N 559 SER CA CB sing N N 560 SER CA HA sing N N 561 SER C O doub N N 562 SER C OXT sing N N 563 SER CB OG sing N N 564 SER CB HB2 sing N N 565 SER CB HB3 sing N N 566 SER OG HG sing N N 567 SER OXT HXT sing N N 568 THR N CA sing N N 569 THR N H sing N N 570 THR N H2 sing N N 571 THR CA C sing N N 572 THR CA CB sing N N 573 THR CA HA sing N N 574 THR C O doub N N 575 THR C OXT sing N N 576 THR CB OG1 sing N N 577 THR CB CG2 sing N N 578 THR CB HB sing N N 579 THR OG1 HG1 sing N N 580 THR CG2 HG21 sing N N 581 THR CG2 HG22 sing N N 582 THR CG2 HG23 sing N N 583 THR OXT HXT sing N N 584 TRP N CA sing N N 585 TRP N H sing N N 586 TRP N H2 sing N N 587 TRP CA C sing N N 588 TRP CA CB sing N N 589 TRP CA HA sing N N 590 TRP C O doub N N 591 TRP C OXT sing N N 592 TRP CB CG sing N N 593 TRP CB HB2 sing N N 594 TRP CB HB3 sing N N 595 TRP CG CD1 doub Y N 596 TRP CG CD2 sing Y N 597 TRP CD1 NE1 sing Y N 598 TRP CD1 HD1 sing N N 599 TRP CD2 CE2 doub Y N 600 TRP CD2 CE3 sing Y N 601 TRP NE1 CE2 sing Y N 602 TRP NE1 HE1 sing N N 603 TRP CE2 CZ2 sing Y N 604 TRP CE3 CZ3 doub Y N 605 TRP CE3 HE3 sing N N 606 TRP CZ2 CH2 doub Y N 607 TRP CZ2 HZ2 sing N N 608 TRP CZ3 CH2 sing Y N 609 TRP CZ3 HZ3 sing N N 610 TRP CH2 HH2 sing N N 611 TRP OXT HXT sing N N 612 TYE O C sing N N 613 TYE CA C sing N N 614 TYE C HC1 sing N N 615 TYE C HC2 sing N N 616 TYE N CA sing N N 617 TYE N H sing N N 618 TYE N H2 sing N N 619 TYE O HO sing N N 620 TYE CA CB sing N N 621 TYE CA HA sing N N 622 TYE CB CG sing N N 623 TYE CB HB sing N N 624 TYE CB HBA sing N N 625 TYE CD1 CG doub Y N 626 TYE CG CD2 sing Y N 627 TYE CZ OH sing N N 628 TYE OH HOH sing N N 629 TYE CE1 CZ doub Y N 630 TYE CZ CE2 sing Y N 631 TYE CD1 CE1 sing Y N 632 TYE CD1 HD1 sing N N 633 TYE CD2 CE2 doub Y N 634 TYE CD2 HD2 sing N N 635 TYE CE1 HE1 sing N N 636 TYE CE2 HE2 sing N N 637 TYR N CA sing N N 638 TYR N H sing N N 639 TYR N H2 sing N N 640 TYR CA C sing N N 641 TYR CA CB sing N N 642 TYR CA HA sing N N 643 TYR C O doub N N 644 TYR C OXT sing N N 645 TYR CB CG sing N N 646 TYR CB HB2 sing N N 647 TYR CB HB3 sing N N 648 TYR CG CD1 doub Y N 649 TYR CG CD2 sing Y N 650 TYR CD1 CE1 sing Y N 651 TYR CD1 HD1 sing N N 652 TYR CD2 CE2 doub Y N 653 TYR CD2 HD2 sing N N 654 TYR CE1 CZ doub Y N 655 TYR CE1 HE1 sing N N 656 TYR CE2 CZ sing Y N 657 TYR CE2 HE2 sing N N 658 TYR CZ OH sing N N 659 TYR OH HH sing N N 660 TYR OXT HXT sing N N 661 U OP3 P sing N N 662 U OP3 HOP3 sing N N 663 U P OP1 doub N N 664 U P OP2 sing N N 665 U P "O5'" sing N N 666 U OP2 HOP2 sing N N 667 U "O5'" "C5'" sing N N 668 U "C5'" "C4'" sing N N 669 U "C5'" "H5'" sing N N 670 U "C5'" "H5''" sing N N 671 U "C4'" "O4'" sing N N 672 U "C4'" "C3'" sing N N 673 U "C4'" "H4'" sing N N 674 U "O4'" "C1'" sing N N 675 U "C3'" "O3'" sing N N 676 U "C3'" "C2'" sing N N 677 U "C3'" "H3'" sing N N 678 U "O3'" "HO3'" sing N N 679 U "C2'" "O2'" sing N N 680 U "C2'" "C1'" sing N N 681 U "C2'" "H2'" sing N N 682 U "O2'" "HO2'" sing N N 683 U "C1'" N1 sing N N 684 U "C1'" "H1'" sing N N 685 U N1 C2 sing N N 686 U N1 C6 sing N N 687 U C2 O2 doub N N 688 U C2 N3 sing N N 689 U N3 C4 sing N N 690 U N3 H3 sing N N 691 U C4 O4 doub N N 692 U C4 C5 sing N N 693 U C5 C6 doub N N 694 U C5 H5 sing N N 695 U C6 H6 sing N N 696 VAL N CA sing N N 697 VAL N H sing N N 698 VAL N H2 sing N N 699 VAL CA C sing N N 700 VAL CA CB sing N N 701 VAL CA HA sing N N 702 VAL C O doub N N 703 VAL C OXT sing N N 704 VAL CB CG1 sing N N 705 VAL CB CG2 sing N N 706 VAL CB HB sing N N 707 VAL CG1 HG11 sing N N 708 VAL CG1 HG12 sing N N 709 VAL CG1 HG13 sing N N 710 VAL CG2 HG21 sing N N 711 VAL CG2 HG22 sing N N 712 VAL CG2 HG23 sing N N 713 VAL OXT HXT sing N N 714 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1H3E 'double helix' 1H3E 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B G 1 1_555 B C 82 1_555 -0.057 -0.111 0.015 7.527 -18.701 -0.348 1 B_G1:C72_B B 1 ? B 72 ? 19 1 1 B G 2 1_555 B C 81 1_555 -0.037 -0.041 -0.557 -17.846 -10.788 3.089 2 B_G2:C71_B B 2 ? B 71 ? 19 1 1 B G 3 1_555 B C 80 1_555 -0.050 -0.198 -0.145 -7.821 -8.935 -0.644 3 B_G3:C70_B B 3 ? B 70 ? 19 1 1 B C 4 1_555 B G 79 1_555 0.153 -0.190 -0.495 -0.100 -14.580 0.439 4 B_C4:G69_B B 4 ? B 69 ? 19 1 1 B A 5 1_555 B U 78 1_555 -0.004 -0.080 0.341 3.462 -12.257 -2.846 5 B_A5:U68_B B 5 ? B 68 ? 20 1 1 B G 6 1_555 B C 77 1_555 -0.405 -0.254 0.313 1.426 -8.905 -1.150 6 B_G6:C67_B B 6 ? B 67 ? 19 1 1 B G 7 1_555 B C 76 1_555 0.066 -0.091 -0.318 -9.102 -2.162 -2.681 7 B_G7:C66_B B 7 ? B 66 ? 19 1 1 B G 59 1_555 B C 75 1_555 -0.315 0.057 -0.060 -8.310 -9.731 1.553 8 B_G49:C65_B B 49 ? B 65 ? 19 1 1 B C 60 1_555 B G 74 1_555 0.306 -0.032 0.282 -4.958 -10.337 3.990 9 B_C50:G64_B B 50 ? B 64 ? 19 1 1 B U 61 1_555 B A 73 1_555 0.025 -0.090 -0.005 3.766 -12.253 5.668 10 B_U51:A63_B B 51 ? B 63 ? 20 1 1 B G 62 1_555 B C 72 1_555 -0.136 -0.132 -0.276 -4.650 -7.100 1.850 11 B_G52:C62_B B 52 ? B 62 ? 19 1 1 B G 63 1_555 B C 71 1_555 -0.014 -0.061 -0.260 -17.617 -15.781 4.664 12 B_G53:C61_B B 53 ? B 61 ? 19 1 1 B 5MU 64 1_555 B 1MA 68 1_555 4.421 -2.145 -0.172 -10.407 11.003 -108.616 13 B_5MU54:1MA58_B B 54 ? B 58 ? 24 4 1 B PSU 65 1_555 B G 17 1_555 0.168 -5.692 0.138 10.896 -1.168 -127.327 14 B_PSU55:G18_B B 55 ? B 18 ? ? 2 1 B G 53 1_555 B C 48 1_555 -0.375 -0.114 0.692 5.594 26.655 8.966 15 B_G47E:C47_B B 47 E B 47 ? 19 1 1 B C 54 1_555 B G 47 1_555 0.058 0.007 -0.087 5.188 8.911 0.397 16 B_C47F:G46_B B 47 F B 46 ? 19 1 1 B C 55 1_555 B G 46 1_555 0.087 0.042 -0.737 27.671 -13.831 2.871 17 B_C47G:G45_B B 47 G B 45 ? 19 1 1 B U 56 1_555 B A 21 1_555 3.343 -1.635 1.044 -8.849 9.796 -85.237 18 B_U47H:A20B_B B 47 H B 20 B 24 4 1 B U 57 1_555 B A 22 1_555 5.294 -3.297 0.452 -23.256 -48.084 -37.116 19 B_U47I:A21_B B 47 I B 21 ? ? ? 1 B C 58 1_555 B G 15 1_555 -0.071 -4.022 -0.368 3.048 -17.597 -149.201 20 B_C48:G15_B B 48 ? B 15 ? 22 2 1 B G 18 1_555 B C 66 1_555 -0.018 -0.026 -0.310 -25.352 -16.775 -4.018 21 B_G19:C56_B B 19 ? B 56 ? 19 1 1 B U 8 1_555 B A 14 1_555 4.235 -2.494 0.938 -12.260 13.727 -91.423 22 B_U8:A14_B B 8 ? B 14 ? 24 4 1 B A 23 1_555 B G 13 1_555 -6.827 -3.805 -0.612 -3.144 -1.214 2.685 23 B_A22:G13_B B 22 ? B 13 ? 11 5 1 B G 24 1_555 B C 12 1_555 -0.388 -0.141 0.046 -1.900 -2.177 0.455 24 B_G23:C12_B B 23 ? B 12 ? 19 1 1 B G 25 1_555 B C 11 1_555 -0.128 -0.187 -0.298 -6.608 5.115 0.876 25 B_G24:C11_B B 24 ? B 11 ? 19 1 1 B G 26 1_555 B C 10 1_555 -0.195 -0.258 -0.480 -11.262 -10.603 -1.304 26 B_G25:C10_B B 25 ? B 10 ? 19 1 1 B G 27 1_555 B U 45 1_555 -2.709 -0.875 0.042 1.782 -12.063 -1.664 27 B_G26:U44_B B 26 ? B 44 ? 28 1 1 B A 28 1_555 B U 44 1_555 0.013 -0.261 0.600 16.302 -19.432 3.545 28 B_A27:U43_B B 27 ? B 43 ? 20 1 1 B C 29 1_555 B G 43 1_555 0.403 -0.127 -0.075 9.114 -17.861 4.413 29 B_C28:G42_B B 28 ? B 42 ? 19 1 1 B G 30 1_555 B C 42 1_555 -0.220 -0.101 0.498 6.643 -0.673 3.590 30 B_G29:C41_B B 29 ? B 41 ? 19 1 1 B G 31 1_555 B C 41 1_555 -0.367 -0.148 -1.298 -27.932 -24.969 10.788 31 B_G30:C40_B B 30 ? B 40 ? 19 1 1 B U 32 1_555 B A 40 1_555 0.009 -0.158 -0.003 -10.646 -11.082 2.252 32 B_U31:A39_B B 31 ? B 39 ? 20 1 1 B C 33 1_555 B A 38 1_555 5.897 -1.623 -0.341 -12.914 22.684 -45.495 33 B_C32:A37_B B 32 ? B 37 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B G 1 1_555 B C 82 1_555 B G 2 1_555 B C 81 1_555 -0.911 -2.284 3.780 0.926 11.045 24.919 -7.638 2.168 2.522 24.131 -2.023 27.237 1 BB_G1G2:C71C72_BB B 1 ? B 72 ? B 2 ? B 71 ? 1 B G 2 1_555 B C 81 1_555 B G 3 1_555 B C 80 1_555 -0.528 -1.527 2.853 -3.853 7.505 34.730 -3.395 0.396 2.521 12.349 6.340 35.710 2 BB_G2G3:C70C71_BB B 2 ? B 71 ? B 3 ? B 70 ? 1 B G 3 1_555 B C 80 1_555 B C 4 1_555 B G 79 1_555 0.204 -1.257 3.034 6.273 3.433 31.661 -2.802 0.643 2.872 6.193 -11.317 32.438 3 BB_G3C4:G69C70_BB B 3 ? B 70 ? B 4 ? B 69 ? 1 B C 4 1_555 B G 79 1_555 B A 5 1_555 B U 78 1_555 0.517 -1.390 3.069 -0.297 9.099 36.637 -3.197 -0.834 2.656 14.207 0.463 37.714 4 BB_C4A5:U68G69_BB B 4 ? B 69 ? B 5 ? B 68 ? 1 B A 5 1_555 B U 78 1_555 B G 6 1_555 B C 77 1_555 0.921 -2.383 2.939 3.801 10.658 26.489 -6.665 -1.187 1.963 22.025 -7.856 28.764 5 BB_A5G6:C67U68_BB B 5 ? B 68 ? B 6 ? B 67 ? 1 B G 6 1_555 B C 77 1_555 B G 7 1_555 B C 76 1_555 -0.072 -1.974 3.431 4.283 18.027 32.666 -5.217 0.621 2.074 29.300 -6.961 37.430 6 BB_G6G7:C66C67_BB B 6 ? B 67 ? B 7 ? B 66 ? 1 B G 7 1_555 B C 76 1_555 B G 59 1_555 B C 75 1_555 -0.014 -2.293 3.178 -0.741 2.558 32.223 -4.546 -0.099 2.992 4.598 1.332 32.330 7 BB_G7G49:C65C66_BB B 7 ? B 66 ? B 49 ? B 65 ? 1 B G 59 1_555 B C 75 1_555 B C 60 1_555 B G 74 1_555 -0.718 -1.889 3.186 -2.000 -2.546 36.116 -2.679 0.873 3.341 -4.096 3.218 36.256 8 BB_G49C50:G64C65_BB B 49 ? B 65 ? B 50 ? B 64 ? 1 B C 60 1_555 B G 74 1_555 B U 61 1_555 B A 73 1_555 0.298 -1.064 3.032 4.162 7.544 31.279 -3.096 0.122 2.724 13.670 -7.542 32.416 9 BB_C50U51:A63G64_BB B 50 ? B 64 ? B 51 ? B 63 ? 1 B U 61 1_555 B A 73 1_555 B G 62 1_555 B C 72 1_555 0.415 -1.633 3.389 1.835 10.107 26.644 -5.510 -0.443 2.628 20.967 -3.807 28.522 10 BB_U51G52:C62A63_BB B 51 ? B 63 ? B 52 ? B 62 ? 1 B G 62 1_555 B C 72 1_555 B G 63 1_555 B C 71 1_555 0.833 -1.524 3.606 5.330 5.636 34.423 -3.423 -0.516 3.409 9.376 -8.868 35.261 11 BB_G52G53:C61C62_BB B 52 ? B 62 ? B 53 ? B 61 ? 1 B G 63 1_555 B C 71 1_555 B 5MU 64 1_555 B 1MA 68 1_555 -3.209 -2.076 3.229 3.890 1.172 91.579 -1.469 2.310 3.101 0.817 -2.713 91.649 12 BB_G535MU54:1MA58C61_BB B 53 ? B 61 ? B 54 ? B 58 ? 1 B 5MU 64 1_555 B 1MA 68 1_555 B PSU 65 1_555 B G 17 1_555 1.188 -0.254 3.122 9.057 -0.042 32.432 -0.432 -0.567 3.324 -0.073 -15.834 33.640 13 BB_5MU54PSU55:G181MA58_BB B 54 ? B 58 ? B 55 ? B 18 ? 1 B G 53 1_555 B C 48 1_555 B C 54 1_555 B G 47 1_555 -0.574 -2.056 3.371 6.674 9.613 28.750 -5.543 2.251 2.387 18.425 -12.793 30.994 14 BB_G47EC47F:G46C47_BB B 47 E B 47 ? B 47 F B 46 ? 1 B C 54 1_555 B G 47 1_555 B C 55 1_555 B G 46 1_555 0.004 -1.528 2.690 1.686 1.159 29.322 -3.215 0.287 2.625 2.285 -3.326 29.392 15 BB_C47FC47G:G45G46_BB B 47 F B 46 ? B 47 G B 45 ? 1 B C 55 1_555 B G 46 1_555 B U 56 1_555 B A 21 1_555 -3.484 -2.200 4.461 -10.286 20.815 73.020 -2.624 2.411 4.192 17.077 8.439 76.130 16 BB_C47GU47H:A20BG45_BB B 47 G B 45 ? B 47 H B 20 B 1 B U 56 1_555 B A 21 1_555 B U 57 1_555 B A 22 1_555 -2.262 -1.906 3.719 3.809 14.621 21.331 -7.855 5.957 1.668 34.474 -8.980 26.089 17 BB_U47HU47I:A21A20B_BB B 47 H B 20 B B 47 I B 21 ? 1 B U 57 1_555 B A 22 1_555 B C 58 1_555 B G 15 1_555 -4.286 0.500 2.645 10.824 11.565 47.198 0.007 5.656 1.751 13.991 -13.094 49.640 18 BB_U47IC48:G15A21_BB B 47 I B 21 ? B 48 ? B 15 ? 1 B U 8 1_555 B A 14 1_555 B A 23 1_555 B G 13 1_555 1.053 -2.118 2.720 -11.786 -4.054 47.065 -2.317 -2.024 2.565 -4.975 14.464 48.597 19 BB_U8A22:G13A14_BB B 8 ? B 14 ? B 22 ? B 13 ? 1 B A 23 1_555 B G 13 1_555 B G 24 1_555 B C 12 1_555 -0.950 -0.990 3.215 -7.371 -0.088 60.175 -0.977 0.584 3.302 -0.087 7.321 60.583 20 BB_A22G23:C12G13_BB B 22 ? B 13 ? B 23 ? B 12 ? 1 B G 24 1_555 B C 12 1_555 B G 25 1_555 B C 11 1_555 -0.496 -1.573 3.371 -3.023 1.912 32.202 -3.164 0.343 3.306 3.434 5.429 32.395 21 BB_G23G24:C11C12_BB B 23 ? B 12 ? B 24 ? B 11 ? 1 B G 25 1_555 B C 11 1_555 B G 26 1_555 B C 10 1_555 0.239 -1.837 3.380 2.389 7.379 34.491 -4.096 -0.048 2.946 12.254 -3.966 35.327 22 BB_G24G25:C10C11_BB B 24 ? B 11 ? B 25 ? B 10 ? 1 B G 26 1_555 B C 10 1_555 B G 27 1_555 B U 45 1_555 2.900 0.134 3.084 -6.382 3.121 47.963 -0.052 -3.972 2.703 3.815 7.800 48.456 23 BB_G25G26:U44C10_BB B 25 ? B 10 ? B 26 ? B 44 ? 1 B G 27 1_555 B U 45 1_555 B A 28 1_555 B U 44 1_555 0.387 -0.743 2.862 -6.492 2.477 40.625 -1.286 -1.154 2.723 3.536 9.268 41.190 24 BB_G26A27:U43U44_BB B 26 ? B 44 ? B 27 ? B 43 ? 1 B A 28 1_555 B U 44 1_555 B C 29 1_555 B G 43 1_555 0.108 -1.508 3.286 5.204 5.790 37.127 -3.042 0.483 3.013 8.973 -8.064 37.906 25 BB_A27C28:G42U43_BB B 27 ? B 43 ? B 28 ? B 42 ? 1 B C 29 1_555 B G 43 1_555 B G 30 1_555 B C 42 1_555 -0.270 -2.038 2.997 -7.090 11.077 28.896 -5.400 -0.573 2.100 20.886 13.369 31.690 26 BB_C28G29:C41G42_BB B 28 ? B 42 ? B 29 ? B 41 ? 1 B G 30 1_555 B C 42 1_555 B G 31 1_555 B C 41 1_555 0.738 -1.744 4.217 16.793 16.454 30.727 -5.164 1.453 2.975 26.698 -27.247 38.517 27 BB_G29G30:C40C41_BB B 29 ? B 41 ? B 30 ? B 40 ? 1 B G 31 1_555 B C 41 1_555 B U 32 1_555 B A 40 1_555 -0.495 -1.011 2.786 -10.063 8.450 31.425 -2.861 -0.502 2.479 14.816 17.645 33.998 28 BB_G30U31:A39C40_BB B 30 ? B 40 ? B 31 ? B 39 ? 1 B U 32 1_555 B A 40 1_555 B C 33 1_555 B A 38 1_555 -0.304 -2.317 5.261 -8.392 16.343 74.363 -2.626 -0.140 4.752 13.326 6.843 76.279 29 BB_U31C32:A37A39_BB B 31 ? B 39 ? B 32 ? B 37 ? # _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name Other _pdbx_initial_refinement_model.details 'T. THERMOPHILUS TYROSYL-TRNA SYNTHETASE PREVIOUSLY DETERMINED BY SIRAS BY SAME AUTHORS' # _atom_sites.entry_id 1H3E _atom_sites.fract_transf_matrix[1][1] 0.007721 _atom_sites.fract_transf_matrix[1][2] 0.004457 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008915 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009137 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_