HEADER ALLERGEN 26-FEB-03 1H4B TITLE SOLUTION STRUCTURE OF THE BIRCH POLLEN ALLERGEN BET V 4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLCALCIN BET V 4; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CALCIUM-BINDING POLLEN ALLERGEN BET V 4; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BETULA VERRUCOSA; SOURCE 3 ORGANISM_COMMON: WHITE BIRCH; SOURCE 4 ORGANISM_TAXID: 3505; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PMW175 KEYWDS ALLERGEN, BIRCH POLLEN ALLERGEN, CALCIUM-BINDING POLCALCIN, KEYWDS 2 HETERONUCLEAR NMR EXPDTA SOLUTION NMR NUMMDL 25 AUTHOR P.NEUDECKER,J.NERKAMP,A.EISENMANN,T.LAUBER,K.LEHMANN,K.SCHWEIMER, AUTHOR 2 P.ROESCH REVDAT 6 15-MAY-24 1H4B 1 REMARK LINK REVDAT 5 24-FEB-09 1H4B 1 VERSN REVDAT 4 18-MAR-04 1H4B 1 ATOM REVDAT 3 10-MAR-04 1H4B 1 ATOM REVDAT 2 04-MAR-04 1H4B 1 JRNL REVDAT 1 26-FEB-04 1H4B 0 JRNL AUTH P.NEUDECKER,J.NERKAMP,A.EISENMANN,A.NOURSE,T.LAUBER, JRNL AUTH 2 K.SCHWEIMER,K.LEHMANN,S.SCHWARZINGER,F.FERREIRA,P.ROESCH JRNL TITL SOLUTION STRUCTURE, DYNAMICS, AND HYDRODYNAMICS OF THE JRNL TITL 2 CALCIUM-BOUND CROSS-REACTIVE BIRCH POLLEN ALLERGEN BET V 4 JRNL TITL 3 REVEAL A CANONICAL MONOMERIC TWO EF-HAND ASSEMBLY WITH A JRNL TITL 4 REGULATORY FUNCTION JRNL REF J.MOL.BIOL. V. 336 1141 2004 JRNL REFN ISSN 0022-2836 JRNL PMID 15037075 JRNL DOI 10.1016/J.JMB.2003.12.070 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XPLOR-NIH 1.2.1 REMARK 3 AUTHORS : BRUNGER, CLORE, KUSZEWSKI, SCHWIETERS, TJ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1H4B COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-FEB-03. REMARK 100 THE DEPOSITION ID IS D_1290012240. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6 REMARK 210 IONIC STRENGTH : 45 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D-TOCSY; 2D-NOESY; 1H; 15N REMARK 210 -HSQC; 15N-IPAP; HNHA; 3D-1H; REMARK 210 15N-TOCSY-HSQC; 15N/1H; 15N- REMARK 210 HMQC-NOESY-HSQC; 13C/1H; 13C- REMARK 210 CTHSQC; HNCO; LONG-RANGE H(N)CO; REMARK 210 C(CO)NH; HNCA; H(C)CH-COSY; (H) REMARK 210 CCH-COSY; 13C-NOESY-HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 750 MHZ REMARK 210 SPECTROMETER MODEL : DRX; DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NDEE, NMRVIEW 5.0.4, XPLOR-NIH REMARK 210 1.2.1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 90 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 25 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O MET A 50 H ASP A 54 1.52 REMARK 500 O ALA A 28 H GLY A 32 1.55 REMARK 500 O LYS A 8 H GLU A 12 1.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 19 103.08 -57.75 REMARK 500 1 SER A 40 52.37 -153.76 REMARK 500 1 ASN A 73 54.95 -149.38 REMARK 500 2 ASP A 3 179.59 -51.08 REMARK 500 2 ASP A 19 103.66 -55.71 REMARK 500 2 SER A 40 51.78 -155.63 REMARK 500 2 ASP A 54 101.31 -58.62 REMARK 500 2 ASN A 73 51.46 -148.03 REMARK 500 3 ASP A 19 103.37 -58.64 REMARK 500 3 SER A 40 57.40 -155.49 REMARK 500 3 ASP A 54 101.52 -59.51 REMARK 500 3 ASN A 73 56.06 -152.10 REMARK 500 4 SER A 40 58.62 -156.07 REMARK 500 4 ASN A 73 56.43 -152.24 REMARK 500 5 ASP A 19 103.48 -56.48 REMARK 500 5 SER A 40 66.45 -155.25 REMARK 500 5 ASP A 54 101.23 -59.52 REMARK 500 5 ASN A 73 58.37 -146.24 REMARK 500 6 ASP A 19 103.28 -59.22 REMARK 500 6 SER A 40 64.64 -154.72 REMARK 500 6 ASN A 73 55.28 -148.33 REMARK 500 7 SER A 40 51.35 -156.54 REMARK 500 7 ASP A 54 101.37 -59.11 REMARK 500 7 ASN A 73 57.01 -150.58 REMARK 500 8 ASP A 19 103.52 -57.88 REMARK 500 8 SER A 40 55.63 -154.75 REMARK 500 8 ASP A 54 101.41 -59.74 REMARK 500 8 ASN A 73 56.73 -149.70 REMARK 500 9 SER A 40 67.70 -155.74 REMARK 500 9 ASP A 54 100.69 -58.40 REMARK 500 9 ASN A 73 58.69 -150.24 REMARK 500 10 ASP A 19 103.66 -59.18 REMARK 500 10 SER A 40 60.58 -153.82 REMARK 500 10 ASN A 73 48.42 -151.69 REMARK 500 11 SER A 40 56.63 -155.18 REMARK 500 11 ASN A 73 58.17 -148.83 REMARK 500 12 ASP A 19 103.48 -57.36 REMARK 500 12 SER A 40 65.04 -155.76 REMARK 500 12 ASN A 73 57.68 -145.22 REMARK 500 13 ASP A 19 103.33 -54.66 REMARK 500 13 SER A 40 61.57 -155.44 REMARK 500 13 ASP A 54 101.47 -59.97 REMARK 500 13 ASN A 73 53.29 -145.94 REMARK 500 14 ASP A 19 103.43 -57.58 REMARK 500 14 SER A 40 52.53 -155.15 REMARK 500 14 ASN A 73 46.31 -150.00 REMARK 500 15 ASP A 19 103.11 -56.02 REMARK 500 15 SER A 40 52.23 -116.79 REMARK 500 16 ASP A 19 103.51 -56.12 REMARK 500 16 SER A 40 50.77 -154.30 REMARK 500 REMARK 500 THIS ENTRY HAS 79 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 11 0.19 SIDE CHAIN REMARK 500 1 ARG A 13 0.25 SIDE CHAIN REMARK 500 1 ARG A 17 0.32 SIDE CHAIN REMARK 500 1 ARG A 71 0.28 SIDE CHAIN REMARK 500 1 ARG A 74 0.14 SIDE CHAIN REMARK 500 2 ARG A 11 0.18 SIDE CHAIN REMARK 500 2 ARG A 13 0.29 SIDE CHAIN REMARK 500 2 ARG A 17 0.30 SIDE CHAIN REMARK 500 2 ARG A 71 0.30 SIDE CHAIN REMARK 500 2 ARG A 74 0.30 SIDE CHAIN REMARK 500 3 ARG A 11 0.30 SIDE CHAIN REMARK 500 3 ARG A 13 0.31 SIDE CHAIN REMARK 500 3 ARG A 17 0.23 SIDE CHAIN REMARK 500 3 ARG A 71 0.32 SIDE CHAIN REMARK 500 4 ARG A 11 0.19 SIDE CHAIN REMARK 500 4 ARG A 17 0.32 SIDE CHAIN REMARK 500 4 ARG A 74 0.23 SIDE CHAIN REMARK 500 5 ARG A 11 0.22 SIDE CHAIN REMARK 500 5 ARG A 13 0.20 SIDE CHAIN REMARK 500 5 ARG A 17 0.29 SIDE CHAIN REMARK 500 5 ARG A 71 0.15 SIDE CHAIN REMARK 500 5 ARG A 74 0.32 SIDE CHAIN REMARK 500 6 ARG A 11 0.11 SIDE CHAIN REMARK 500 6 ARG A 17 0.22 SIDE CHAIN REMARK 500 6 ARG A 71 0.08 SIDE CHAIN REMARK 500 6 ARG A 74 0.24 SIDE CHAIN REMARK 500 7 ARG A 11 0.25 SIDE CHAIN REMARK 500 7 ARG A 13 0.31 SIDE CHAIN REMARK 500 7 ARG A 17 0.15 SIDE CHAIN REMARK 500 7 ARG A 71 0.28 SIDE CHAIN REMARK 500 7 ARG A 74 0.29 SIDE CHAIN REMARK 500 8 ARG A 11 0.28 SIDE CHAIN REMARK 500 8 ARG A 13 0.22 SIDE CHAIN REMARK 500 8 ARG A 17 0.22 SIDE CHAIN REMARK 500 8 ARG A 74 0.29 SIDE CHAIN REMARK 500 9 ARG A 11 0.23 SIDE CHAIN REMARK 500 9 ARG A 13 0.28 SIDE CHAIN REMARK 500 9 ARG A 17 0.22 SIDE CHAIN REMARK 500 9 ARG A 71 0.32 SIDE CHAIN REMARK 500 9 ARG A 74 0.20 SIDE CHAIN REMARK 500 10 ARG A 11 0.31 SIDE CHAIN REMARK 500 10 ARG A 13 0.32 SIDE CHAIN REMARK 500 10 ARG A 17 0.23 SIDE CHAIN REMARK 500 10 ARG A 71 0.09 SIDE CHAIN REMARK 500 10 ARG A 74 0.30 SIDE CHAIN REMARK 500 11 ARG A 11 0.32 SIDE CHAIN REMARK 500 11 ARG A 13 0.25 SIDE CHAIN REMARK 500 11 ARG A 17 0.28 SIDE CHAIN REMARK 500 11 ARG A 74 0.12 SIDE CHAIN REMARK 500 12 ARG A 11 0.32 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 114 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1085 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 19 OD1 REMARK 620 2 ASN A 21 OD1 81.7 REMARK 620 3 ASP A 23 OD1 84.6 78.3 REMARK 620 4 LYS A 25 O 82.6 153.9 79.6 REMARK 620 5 GLU A 30 OE1 106.7 126.8 153.0 77.9 REMARK 620 6 GLU A 30 OE2 94.0 76.0 154.2 125.9 51.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1086 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 54 OD1 REMARK 620 2 ASP A 56 OD1 81.9 REMARK 620 3 ASP A 58 OD1 84.8 78.1 REMARK 620 4 PHE A 60 O 82.8 153.8 79.5 REMARK 620 5 GLU A 65 OE2 94.0 76.0 154.0 126.3 REMARK 620 6 GLU A 65 OE1 106.7 126.7 153.3 78.3 51.3 REMARK 620 N 1 2 3 4 5 REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A1085 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A1086 DBREF 1H4B A 1 84 UNP Q39419 POC4_BETVE 2 85 SEQRES 1 A 84 ALA ASP ASP HIS PRO GLN ASP LYS ALA GLU ARG GLU ARG SEQRES 2 A 84 ILE PHE LYS ARG PHE ASP ALA ASN GLY ASP GLY LYS ILE SEQRES 3 A 84 SER ALA ALA GLU LEU GLY GLU ALA LEU LYS THR LEU GLY SEQRES 4 A 84 SER ILE THR PRO ASP GLU VAL LYS HIS MET MET ALA GLU SEQRES 5 A 84 ILE ASP THR ASP GLY ASP GLY PHE ILE SER PHE GLN GLU SEQRES 6 A 84 PHE THR ASP PHE GLY ARG ALA ASN ARG GLY LEU LEU LYS SEQRES 7 A 84 ASP VAL ALA LYS ILE PHE HET CA A1085 1 HET CA A1086 1 HETNAM CA CALCIUM ION FORMUL 2 CA 2(CA 2+) HELIX 1 1 PRO A 5 PHE A 18 1 14 HELIX 2 2 ALA A 28 LEU A 35 1 8 HELIX 3 3 LYS A 36 LEU A 38 5 3 HELIX 4 4 PRO A 43 ILE A 53 1 11 HELIX 5 5 PHE A 63 ALA A 72 1 10 HELIX 6 6 ARG A 74 PHE A 84 1 11 SHEET 1 AA 2 LYS A 25 SER A 27 0 SHEET 2 AA 2 PHE A 60 SER A 62 -1 O ILE A 61 N ILE A 26 LINK OD1 ASP A 19 CA CA A1085 1555 1555 2.32 LINK OD1 ASN A 21 CA CA A1085 1555 1555 2.37 LINK OD1 ASP A 23 CA CA A1085 1555 1555 2.27 LINK O LYS A 25 CA CA A1085 1555 1555 2.11 LINK OE1 GLU A 30 CA CA A1085 1555 1555 2.46 LINK OE2 GLU A 30 CA CA A1085 1555 1555 2.46 LINK OD1 ASP A 54 CA CA A1086 1555 1555 2.32 LINK OD1 ASP A 56 CA CA A1086 1555 1555 2.37 LINK OD1 ASP A 58 CA CA A1086 1555 1555 2.27 LINK O PHE A 60 CA CA A1086 1555 1555 2.12 LINK OE2 GLU A 65 CA CA A1086 1555 1555 2.46 LINK OE1 GLU A 65 CA CA A1086 1555 1555 2.46 SITE 1 AC1 5 ASP A 19 ASN A 21 ASP A 23 LYS A 25 SITE 2 AC1 5 GLU A 30 SITE 1 AC2 5 ASP A 54 ASP A 56 ASP A 58 PHE A 60 SITE 2 AC2 5 GLU A 65 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1