HEADER TRANSFERASE 22-FEB-01 1H92 TITLE SH3 DOMAIN OF HUMAN LCK TYROSINE KINASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTO-ONCOGENE TYROSINE-PROTEIN KINASE LCK; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SH3 DOMAIN RESIDUES 57-119; COMPND 5 SYNONYM: TYROSINE-PROTEIN KINASE LCK, P56-LCK; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 CELLULAR_LOCATION: INTRACELLULAR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-4T-2 KEYWDS TRANSFERASE, SH3 DOMAIN, TYROSINE KINASE, SIGNAL TRANSDUCTION, LCK EXPDTA SOLUTION NMR NUMMDL 30 AUTHOR K.SCHWEIMER,S.HOFFMANN,U.FRIEDRICH,B.BIESINGER,P.ROESCH,H.STICHT REVDAT 4 15-MAY-24 1H92 1 REMARK REVDAT 3 24-FEB-09 1H92 1 VERSN REVDAT 2 12-JUL-05 1H92 1 JRNL REVDAT 1 22-OCT-01 1H92 0 JRNL AUTH K.SCHWEIMER,S.HOFFMANN,F.BAUER,U.FRIEDRICH,C.KARDINAL, JRNL AUTH 2 S.M.FELLER,B.BIESINGER,H.STICHT JRNL TITL STRUCTURAL INVESTIGATION OF THE BINDING OF A HERPESVIRAL JRNL TITL 2 PROTEIN TO THE SH3 DOMAIN OF TYROSINE KINASE LCK JRNL REF BIOCHEMISTRY V. 41 5120 2002 JRNL REFN ISSN 0006-2960 JRNL PMID 11955060 JRNL DOI 10.1021/BI015986J REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT DETAILS CAN BE FOUND IN THE REMARK 3 JRNL CITATION ABOVE. REMARK 4 REMARK 4 1H92 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-FEB-01. REMARK 100 THE DEPOSITION ID IS D_1290005908. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.4 REMARK 210 IONIC STRENGTH : 150 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 15N-EDITED NOESY; 3D 13C REMARK 210 -EDITED NOESY; 2D 15N-FILTERED REMARK 210 NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW, X-PLOR REMARK 210 METHOD USED : AB INITIO SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 30 REMARK 210 CONFORMERS, SELECTION CRITERIA : LEAST RESTRAINT VIOLATION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE RESONANCE NMR REMARK 210 SPECTROSCOPY ON 13C, 15N LABELED LCK-SH3 DOMAIN REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA A 11 H GLY A 28 1.56 REMARK 500 H LEU A 12 O PHE A 58 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A 19 -155.35 -128.23 REMARK 500 1 PHE A 25 171.11 -45.57 REMARK 500 2 PHE A 25 172.19 -45.32 REMARK 500 3 PHE A 25 172.50 -48.46 REMARK 500 4 PHE A 25 171.74 -50.26 REMARK 500 4 GLN A 36 58.60 -142.09 REMARK 500 4 PRO A 55 159.35 -47.16 REMARK 500 5 PHE A 25 169.59 -44.78 REMARK 500 6 PHE A 25 173.53 -50.14 REMARK 500 7 HIS A 19 -158.25 -141.02 REMARK 500 7 PHE A 25 171.21 -49.91 REMARK 500 8 PHE A 25 168.72 -48.28 REMARK 500 9 PRO A 17 91.53 -59.96 REMARK 500 9 PHE A 25 174.42 -53.36 REMARK 500 10 PHE A 25 175.78 -48.74 REMARK 500 11 HIS A 13 -158.95 -149.35 REMARK 500 11 PHE A 25 171.60 -50.80 REMARK 500 12 PHE A 25 171.88 -47.36 REMARK 500 13 PHE A 25 170.21 -48.10 REMARK 500 14 PHE A 25 174.44 -50.43 REMARK 500 15 GLU A 16 75.28 -110.11 REMARK 500 15 HIS A 19 -158.26 -140.55 REMARK 500 15 PHE A 25 172.71 -54.20 REMARK 500 16 PRO A 17 98.91 -62.99 REMARK 500 16 PHE A 25 171.35 -52.94 REMARK 500 16 GLU A 35 125.49 -172.72 REMARK 500 16 GLN A 36 62.88 -101.87 REMARK 500 17 LEU A 4 -85.34 55.86 REMARK 500 17 PHE A 25 176.33 -50.76 REMARK 500 18 PHE A 25 171.62 -46.64 REMARK 500 19 PHE A 25 174.55 -49.29 REMARK 500 19 ALA A 62 154.97 -43.45 REMARK 500 20 PHE A 25 171.13 -45.31 REMARK 500 20 GLN A 36 57.80 -151.09 REMARK 500 21 PHE A 25 176.57 -53.39 REMARK 500 22 GLU A 16 79.48 -106.90 REMARK 500 22 PRO A 17 109.62 -47.45 REMARK 500 22 PHE A 25 175.99 -54.76 REMARK 500 23 PRO A 17 104.55 -48.55 REMARK 500 23 PHE A 25 170.60 -47.34 REMARK 500 23 GLN A 36 58.10 -142.25 REMARK 500 23 PRO A 55 167.41 -46.37 REMARK 500 23 ALA A 62 -145.73 49.62 REMARK 500 24 PHE A 25 174.13 -53.67 REMARK 500 25 GLU A 16 73.87 -114.07 REMARK 500 25 PHE A 25 169.45 -47.07 REMARK 500 25 ALA A 60 -41.28 -160.26 REMARK 500 25 ALA A 62 25.13 49.18 REMARK 500 26 HIS A 19 -159.34 -129.13 REMARK 500 26 PHE A 25 173.43 -48.43 REMARK 500 REMARK 500 THIS ENTRY HAS 57 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 32 0.11 SIDE CHAIN REMARK 500 2 ARG A 32 0.10 SIDE CHAIN REMARK 500 3 ARG A 32 0.23 SIDE CHAIN REMARK 500 4 ARG A 32 0.31 SIDE CHAIN REMARK 500 5 ARG A 32 0.15 SIDE CHAIN REMARK 500 6 ARG A 32 0.24 SIDE CHAIN REMARK 500 7 ARG A 32 0.28 SIDE CHAIN REMARK 500 8 ARG A 32 0.22 SIDE CHAIN REMARK 500 9 ARG A 32 0.20 SIDE CHAIN REMARK 500 10 ARG A 32 0.31 SIDE CHAIN REMARK 500 11 ARG A 32 0.32 SIDE CHAIN REMARK 500 12 ARG A 32 0.17 SIDE CHAIN REMARK 500 13 ARG A 32 0.30 SIDE CHAIN REMARK 500 14 ARG A 32 0.31 SIDE CHAIN REMARK 500 15 ARG A 32 0.32 SIDE CHAIN REMARK 500 16 ARG A 32 0.28 SIDE CHAIN REMARK 500 17 ARG A 32 0.26 SIDE CHAIN REMARK 500 18 ARG A 32 0.32 SIDE CHAIN REMARK 500 20 ARG A 32 0.31 SIDE CHAIN REMARK 500 21 ARG A 32 0.17 SIDE CHAIN REMARK 500 22 ARG A 32 0.17 SIDE CHAIN REMARK 500 23 ARG A 32 0.32 SIDE CHAIN REMARK 500 24 ARG A 32 0.13 SIDE CHAIN REMARK 500 25 ARG A 32 0.15 SIDE CHAIN REMARK 500 26 ARG A 32 0.28 SIDE CHAIN REMARK 500 27 ARG A 32 0.32 SIDE CHAIN REMARK 500 28 ARG A 32 0.11 SIDE CHAIN REMARK 500 30 ARG A 32 0.12 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1FBZ RELATED DB: PDB REMARK 900 STRUCTURE-BASED DESIGN OF A NOVEL, OSTEOCLAST-SELECTIVE,NONPEPTIDE REMARK 900 SRC SH2 INHIBITOR WITH IN VIVO ANTI-RESORPTIVEACTIVITY REMARK 900 RELATED ID: 1LCJ RELATED DB: PDB REMARK 900 SH2 (SRC HOMOLOGY-2) DOMAIN OF HUMAN P56- LCK TYROSINE KINASE REMARK 900 COMPLEXED WITH THE 11 RESIDUE PHOSPHOTYROSYL PEPTIDE EPQPYEEIPIYL REMARK 900 RELATED ID: 1LCK RELATED DB: PDB REMARK 900 SH3-SH2 DOMAIN FRAGMENT OF HUMAN P56-LCK TYROSINE KINASE COMPLEXED REMARK 900 WITH THE 10 RESIDUE SYNTHETIC PHOSPHOTYROSYL PEPTIDE TEGQPYQPQPA REMARK 900 RELATED ID: 1QPC RELATED DB: PDB REMARK 900 STRUCTURAL ANALYSIS OF THE LYMPHOCYTE-SPECIFIC KINASE LCK IN REMARK 900 COMPLEX WITH NON-SELECTIVE AND SRC FAMILY SELECTIVE KINASE REMARK 900 INHIBITORS REMARK 900 RELATED ID: 1QPD RELATED DB: PDB REMARK 900 STRUCTURAL ANALYSIS OF THE LYMPHOCYTE-SPECIFIC KINASE LCK IN REMARK 900 COMPLEX WITH NON-SELECTIVE AND SRC FAMILY SELECTIVE KINASE REMARK 900 INHIBITORS REMARK 900 RELATED ID: 1QPE RELATED DB: PDB REMARK 900 STRUCTURAL ANALYSIS OF THE LYMPHOCYTE-SPECIFIC KINASE LCK IN REMARK 900 COMPLEX WITH NON-SELECTIVE AND SRC FAMILY SELECTIVE KINASE REMARK 900 INHIBITORS REMARK 900 RELATED ID: 1QPJ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE LYMPHOCYTE-SPECIFIC KINASE LCK IN COMPLEX REMARK 900 WITH STAUROSPORINE. REMARK 900 RELATED ID: 3LCK RELATED DB: PDB REMARK 900 THE KINASE DOMAIN OF HUMAN LYMPHOCYTE KINASE (LCK), ACTIVATED FORM REMARK 900 (AUTO-PHOSPHORYLATED ON TYR394) REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE ALA TO GLY MUTATION AROSE FROM THE EXPRESSION SYSTEM REMARK 999 USED IN WHICH THE N-TERMINAL GST-FUSION PARTNER WAS REMARK 999 REMOVED BY THROMBIN CLEAVAGE. DBREF 1H92 A 1 63 UNP P06239 LCK_HUMAN 57 119 SEQADV 1H92 GLY A 1 UNP P06239 ALA 57 CONFLICT SEQRES 1 A 63 GLY SER PRO LEU GLN ASP ASN LEU VAL ILE ALA LEU HIS SEQRES 2 A 63 SER TYR GLU PRO SER HIS ASP GLY ASP LEU GLY PHE GLU SEQRES 3 A 63 LYS GLY GLU GLN LEU ARG ILE LEU GLU GLN SER GLY GLU SEQRES 4 A 63 TRP TRP LYS ALA GLN SER LEU THR THR GLY GLN GLU GLY SEQRES 5 A 63 PHE ILE PRO PHE ASN PHE VAL ALA LYS ALA ASN SHEET 1 AA 5 GLU A 51 PRO A 55 0 SHEET 2 AA 5 TRP A 40 SER A 45 -1 O TRP A 41 N ILE A 54 SHEET 3 AA 5 GLN A 30 ILE A 33 -1 O ARG A 32 N GLN A 44 SHEET 4 AA 5 LEU A 8 ALA A 11 -1 O VAL A 9 N LEU A 31 SHEET 5 AA 5 VAL A 59 LYS A 61 -1 O ALA A 60 N ILE A 10 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1