data_1H95 # _entry.id 1H95 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1H95 PDBE EBI-5936 WWPDB D_1290005936 BMRB 4147 # _pdbx_database_related.db_id 4147 _pdbx_database_related.details . _pdbx_database_related.db_name BMRB _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1H95 _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2001-02-23 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kloks, C.P.A.M.' 1 'Spronk, C.A.E.M.' 2 'Hoffmann, A.' 3 'Vuister, G.W.' 4 'Grzesiek, S.' 5 'Hilbers, C.W.' 6 # _citation.id primary _citation.title 'The Solution Structure and DNA-Binding Properties of the Cold-Shock Domain of the Human Y-Box Protein Yb-1.' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 316 _citation.page_first 317 _citation.page_last ? _citation.year 2002 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 11851341 _citation.pdbx_database_id_DOI 10.1006/JMBI.2001.5334 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Kloks, C.P.A.M.' 1 primary 'Spronk, C.A.E.M.' 2 primary 'Lasonder, E.' 3 primary 'Hoffmann, A.' 4 primary 'Vuister, G.W.' 5 primary 'Grzesiek, S.' 6 primary 'Hilbers, C.W.' 7 # _cell.entry_id 1H95 _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1H95 _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Y-BOX BINDING PROTEIN' _entity.formula_weight 8754.899 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'COLD SHOCK DOMAIN' _entity.details 'SINGLE STRANDED DNA BINDING COLD SHOCK DOMAIN(CSD) OF HUMAN Y-BOX PROTEIN 1 (YB-1)' # _entity_name_com.entity_id 1 _entity_name_com.name CSD # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code MKKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPG _entity_poly.pdbx_seq_one_letter_code_can MKKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 LYS n 1 3 LYS n 1 4 VAL n 1 5 ILE n 1 6 ALA n 1 7 THR n 1 8 LYS n 1 9 VAL n 1 10 LEU n 1 11 GLY n 1 12 THR n 1 13 VAL n 1 14 LYS n 1 15 TRP n 1 16 PHE n 1 17 ASN n 1 18 VAL n 1 19 ARG n 1 20 ASN n 1 21 GLY n 1 22 TYR n 1 23 GLY n 1 24 PHE n 1 25 ILE n 1 26 ASN n 1 27 ARG n 1 28 ASN n 1 29 ASP n 1 30 THR n 1 31 LYS n 1 32 GLU n 1 33 ASP n 1 34 VAL n 1 35 PHE n 1 36 VAL n 1 37 HIS n 1 38 GLN n 1 39 THR n 1 40 ALA n 1 41 ILE n 1 42 LYS n 1 43 LYS n 1 44 ASN n 1 45 ASN n 1 46 PRO n 1 47 ARG n 1 48 LYS n 1 49 TYR n 1 50 LEU n 1 51 ARG n 1 52 SER n 1 53 VAL n 1 54 GLY n 1 55 ASP n 1 56 GLY n 1 57 GLU n 1 58 THR n 1 59 VAL n 1 60 GLU n 1 61 PHE n 1 62 ASP n 1 63 VAL n 1 64 VAL n 1 65 GLU n 1 66 GLY n 1 67 GLU n 1 68 LYS n 1 69 GLY n 1 70 ALA n 1 71 GLU n 1 72 ALA n 1 73 ALA n 1 74 ASN n 1 75 VAL n 1 76 THR n 1 77 GLY n 1 78 PRO n 1 79 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name HUMAN _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'HOMO SAPIENS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PET11A _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 1H95 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession 1H95 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1H95 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 79 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 1H95 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 79 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 79 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 '15N-EDITED NOESY' 1 2 1 '15N-EDITED ROESY' 1 3 1 '13C-EDITED NOESY' 1 4 1 HNHA 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 303 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 6.7 _pdbx_nmr_exptl_sample_conditions.ionic_strength 0 _pdbx_nmr_exptl_sample_conditions.ionic_strength_units ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength 1 INOVA Varian 500 2 INOVA Varian 600 3 DRX Bruker 750 # _pdbx_nmr_refine.entry_id 1H95 _pdbx_nmr_refine.method 'TORSION ANGLE DYNAMICS FOLLOWED BY RESTRAINED MD' _pdbx_nmr_refine.details 'RESTRAINED MD' _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 1H95 _pdbx_nmr_details.text 'THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR SPECTROSCOPY ON 15N AND 15N/13C LABELLED COLD SHOCK DOMAIN OF HUMAN YB-1' # _pdbx_nmr_ensemble.entry_id 1H95 _pdbx_nmr_ensemble.conformers_calculated_total_number 10 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria ? # _pdbx_nmr_representative.entry_id 1H95 _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria ? # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal refinement 'MICHEAL NILGES X-PLOR X-PLOR' X-PLOR NILGES 1 'structure solution' NMRPIPE ? ? 2 'structure solution' PIPP ? ? 3 'structure solution' X-PLOR ? ? 4 # _exptl.entry_id 1H95 _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 1H95 _struct.title ;Solution structure of the single-stranded DNA-binding Cold Shock Domain (CSD) of human Y-box protein 1 (YB1) determined by NMR (10 lowest energy structures) ; _struct.pdbx_descriptor 'Y-BOX BINDING PROTEIN' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1H95 _struct_keywords.pdbx_keywords 'TRANSLATION FACTOR' _struct_keywords.text ;TRANSLATION FACTOR, TRANSCRIPTION FACTOR, OB-FOLD, 5-STRANDED ANTI-PARALLEL BETA-BARREL, SINGLE STRANDED DNA BINDING, COLD SHOCK, Y-BOX ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id THR _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 39 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id ILE _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 41 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id THR _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 39 _struct_conf.end_auth_comp_id ILE _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 41 _struct_conf.pdbx_PDB_helix_class 5 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id AA _struct_sheet.type ? _struct_sheet.number_strands 6 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel AA 3 4 ? parallel AA 4 5 ? anti-parallel AA 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 LYS A 3 ? VAL A 18 ? LYS A 3 VAL A 18 AA 2 GLU A 57 ? GLU A 65 ? GLU A 57 GLU A 65 AA 3 GLY A 69 ? THR A 76 ? GLY A 69 THR A 76 AA 4 LYS A 31 ? HIS A 37 ? LYS A 31 HIS A 37 AA 5 GLY A 21 ? ASN A 28 ? GLY A 21 ASN A 28 AA 6 LYS A 3 ? VAL A 18 ? LYS A 3 VAL A 18 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N GLY A 11 ? N GLY A 11 O VAL A 59 ? O VAL A 59 AA 2 3 N VAL A 64 ? N VAL A 64 O GLU A 71 ? O GLU A 71 AA 3 4 N ALA A 70 ? N ALA A 70 O ASP A 33 ? O ASP A 33 AA 4 5 N VAL A 36 ? N VAL A 36 O GLY A 23 ? O GLY A 23 AA 5 6 N ASN A 26 ? N ASN A 26 O THR A 12 ? O THR A 12 # _database_PDB_matrix.entry_id 1H95 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1H95 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 LYS 2 2 2 LYS LYS A . n A 1 3 LYS 3 3 3 LYS LYS A . n A 1 4 VAL 4 4 4 VAL VAL A . n A 1 5 ILE 5 5 5 ILE ILE A . n A 1 6 ALA 6 6 6 ALA ALA A . n A 1 7 THR 7 7 7 THR THR A . n A 1 8 LYS 8 8 8 LYS LYS A . n A 1 9 VAL 9 9 9 VAL VAL A . n A 1 10 LEU 10 10 10 LEU LEU A . n A 1 11 GLY 11 11 11 GLY GLY A . n A 1 12 THR 12 12 12 THR THR A . n A 1 13 VAL 13 13 13 VAL VAL A . n A 1 14 LYS 14 14 14 LYS LYS A . n A 1 15 TRP 15 15 15 TRP TRP A . n A 1 16 PHE 16 16 16 PHE PHE A . n A 1 17 ASN 17 17 17 ASN ASN A . n A 1 18 VAL 18 18 18 VAL VAL A . n A 1 19 ARG 19 19 19 ARG ARG A . n A 1 20 ASN 20 20 20 ASN ASN A . n A 1 21 GLY 21 21 21 GLY GLY A . n A 1 22 TYR 22 22 22 TYR TYR A . n A 1 23 GLY 23 23 23 GLY GLY A . n A 1 24 PHE 24 24 24 PHE PHE A . n A 1 25 ILE 25 25 25 ILE ILE A . n A 1 26 ASN 26 26 26 ASN ASN A . n A 1 27 ARG 27 27 27 ARG ARG A . n A 1 28 ASN 28 28 28 ASN ASN A . n A 1 29 ASP 29 29 29 ASP ASP A . n A 1 30 THR 30 30 30 THR THR A . n A 1 31 LYS 31 31 31 LYS LYS A . n A 1 32 GLU 32 32 32 GLU GLU A . n A 1 33 ASP 33 33 33 ASP ASP A . n A 1 34 VAL 34 34 34 VAL VAL A . n A 1 35 PHE 35 35 35 PHE PHE A . n A 1 36 VAL 36 36 36 VAL VAL A . n A 1 37 HIS 37 37 37 HIS HIS A . n A 1 38 GLN 38 38 38 GLN GLN A . n A 1 39 THR 39 39 39 THR THR A . n A 1 40 ALA 40 40 40 ALA ALA A . n A 1 41 ILE 41 41 41 ILE ILE A . n A 1 42 LYS 42 42 42 LYS LYS A . n A 1 43 LYS 43 43 43 LYS LYS A . n A 1 44 ASN 44 44 44 ASN ASN A . n A 1 45 ASN 45 45 45 ASN ASN A . n A 1 46 PRO 46 46 46 PRO PRO A . n A 1 47 ARG 47 47 47 ARG ARG A . n A 1 48 LYS 48 48 48 LYS LYS A . n A 1 49 TYR 49 49 49 TYR TYR A . n A 1 50 LEU 50 50 50 LEU LEU A . n A 1 51 ARG 51 51 51 ARG ARG A . n A 1 52 SER 52 52 52 SER SER A . n A 1 53 VAL 53 53 53 VAL VAL A . n A 1 54 GLY 54 54 54 GLY GLY A . n A 1 55 ASP 55 55 55 ASP ASP A . n A 1 56 GLY 56 56 56 GLY GLY A . n A 1 57 GLU 57 57 57 GLU GLU A . n A 1 58 THR 58 58 58 THR THR A . n A 1 59 VAL 59 59 59 VAL VAL A . n A 1 60 GLU 60 60 60 GLU GLU A . n A 1 61 PHE 61 61 61 PHE PHE A . n A 1 62 ASP 62 62 62 ASP ASP A . n A 1 63 VAL 63 63 63 VAL VAL A . n A 1 64 VAL 64 64 64 VAL VAL A . n A 1 65 GLU 65 65 65 GLU GLU A . n A 1 66 GLY 66 66 66 GLY GLY A . n A 1 67 GLU 67 67 67 GLU GLU A . n A 1 68 LYS 68 68 68 LYS LYS A . n A 1 69 GLY 69 69 69 GLY GLY A . n A 1 70 ALA 70 70 70 ALA ALA A . n A 1 71 GLU 71 71 71 GLU GLU A . n A 1 72 ALA 72 72 72 ALA ALA A . n A 1 73 ALA 73 73 73 ALA ALA A . n A 1 74 ASN 74 74 74 ASN ASN A . n A 1 75 VAL 75 75 75 VAL VAL A . n A 1 76 THR 76 76 76 THR THR A . n A 1 77 GLY 77 77 77 GLY GLY A . n A 1 78 PRO 78 78 78 PRO PRO A . n A 1 79 GLY 79 79 79 GLY GLY A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2002-02-21 2 'Structure model' 1 1 2011-05-07 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' # _pdbx_database_remark.id 700 _pdbx_database_remark.text ; SHEET DETERMINATION METHOD: AUTHOR PROVIDED. ; # _pdbx_entry_details.entry_id 1H95 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE SEQUENCE IS MATCHES TO SWISS PROT ENTRY Q90376 (RESIDUES 15-92) WHICH REPRESENTS Y-BOX BINDING PROTEIN FROM COLUMBA LIVIA (DOMESTIC PIGEON). N-TERMINAL METHIONINE ADDED IN PDB-SEQUENCE ; # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 5 OE1 A GLU 65 ? ? HZ3 A LYS 68 ? ? 1.60 2 8 H3 A MET 1 ? ? OE1 A GLU 32 ? ? 1.55 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 27 ? ? CZ A ARG 27 ? ? NH1 A ARG 27 ? ? 123.75 120.30 3.45 0.50 N 2 2 NE A ARG 51 ? ? CZ A ARG 51 ? ? NH1 A ARG 51 ? ? 123.56 120.30 3.26 0.50 N 3 3 NE A ARG 19 ? ? CZ A ARG 19 ? ? NH1 A ARG 19 ? ? 123.92 120.30 3.62 0.50 N 4 3 NE A ARG 27 ? ? CZ A ARG 27 ? ? NH1 A ARG 27 ? ? 124.52 120.30 4.22 0.50 N 5 7 NE A ARG 19 ? ? CZ A ARG 19 ? ? NH2 A ARG 19 ? ? 117.22 120.30 -3.08 0.50 N 6 7 NE A ARG 51 ? ? CZ A ARG 51 ? ? NH1 A ARG 51 ? ? 123.33 120.30 3.03 0.50 N 7 8 NE A ARG 27 ? ? CZ A ARG 27 ? ? NH1 A ARG 27 ? ? 123.39 120.30 3.09 0.50 N 8 8 NE A ARG 47 ? ? CZ A ARG 47 ? ? NH1 A ARG 47 ? ? 123.61 120.30 3.31 0.50 N 9 8 NE A ARG 51 ? ? CZ A ARG 51 ? ? NH1 A ARG 51 ? ? 123.71 120.30 3.41 0.50 N 10 9 NE A ARG 47 ? ? CZ A ARG 47 ? ? NH1 A ARG 47 ? ? 123.54 120.30 3.24 0.50 N 11 10 NE A ARG 47 ? ? CZ A ARG 47 ? ? NH1 A ARG 47 ? ? 123.57 120.30 3.27 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 3 ? ? -116.64 -98.61 2 1 ILE A 5 ? ? -91.37 -61.49 3 1 TRP A 15 ? ? 37.11 63.67 4 1 LYS A 43 ? ? 56.75 -118.54 5 1 ARG A 47 ? ? -112.19 60.07 6 1 TYR A 49 ? ? 70.77 144.38 7 1 LEU A 50 ? ? -93.29 -81.30 8 1 VAL A 53 ? ? -128.27 -77.88 9 1 GLU A 67 ? ? -100.35 -71.23 10 1 GLU A 71 ? ? -122.37 -162.86 11 1 THR A 76 ? ? -96.32 -134.27 12 2 ILE A 5 ? ? -95.61 -72.87 13 2 LYS A 14 ? ? -100.32 -87.29 14 2 LYS A 42 ? ? 65.34 -172.53 15 2 ASN A 44 ? ? 53.21 -86.98 16 2 LYS A 48 ? ? 66.74 -157.44 17 2 GLU A 67 ? ? -95.37 -136.61 18 2 GLU A 71 ? ? -107.01 -166.71 19 2 THR A 76 ? ? -125.96 -121.85 20 3 LYS A 2 ? ? -90.58 -76.52 21 3 VAL A 4 ? ? 70.73 86.76 22 3 ILE A 5 ? ? -80.74 -72.08 23 3 LYS A 8 ? ? 59.18 75.67 24 3 ASN A 17 ? ? -102.52 76.90 25 3 ASN A 28 ? ? -62.48 84.95 26 3 ASP A 29 ? ? -159.42 -76.12 27 3 LYS A 31 ? ? 55.65 81.76 28 3 LYS A 48 ? ? 59.32 -156.52 29 3 LEU A 50 ? ? -88.32 -143.21 30 3 GLU A 67 ? ? -78.30 -145.37 31 3 GLU A 71 ? ? -121.09 -168.10 32 3 ASN A 74 ? ? 34.51 63.36 33 4 LYS A 8 ? ? 53.38 83.01 34 4 THR A 30 ? ? -143.22 33.89 35 4 TYR A 49 ? ? -86.81 -147.64 36 4 ARG A 51 ? ? -139.71 -83.21 37 4 GLU A 67 ? ? -107.82 -89.57 38 4 THR A 76 ? ? -113.52 -122.09 39 5 LYS A 3 ? ? 75.38 -98.90 40 5 ASP A 29 ? ? -76.25 -81.33 41 5 LYS A 31 ? ? 77.57 62.29 42 5 ASN A 44 ? ? -76.73 -80.39 43 5 TYR A 49 ? ? 66.32 159.74 44 5 GLU A 65 ? ? -139.95 -111.29 45 5 GLU A 67 ? ? -101.75 -69.78 46 6 LYS A 8 ? ? 60.95 73.15 47 6 LYS A 14 ? ? -105.37 -86.95 48 6 ASN A 28 ? ? -82.54 48.00 49 6 THR A 30 ? ? -150.34 35.33 50 6 LYS A 31 ? ? 57.87 75.99 51 6 LYS A 42 ? ? -73.43 -74.91 52 6 TYR A 49 ? ? -97.93 56.82 53 6 ARG A 51 ? ? -101.49 79.79 54 6 SER A 52 ? ? -107.02 -85.57 55 6 VAL A 53 ? ? -108.42 -106.58 56 6 GLU A 67 ? ? -123.67 -145.47 57 6 GLU A 71 ? ? -120.53 -168.04 58 6 THR A 76 ? ? -83.03 -82.85 59 7 LYS A 2 ? ? 60.83 -72.20 60 7 LYS A 3 ? ? 76.79 88.27 61 7 VAL A 4 ? ? -113.97 -72.54 62 7 TRP A 15 ? ? 77.83 154.11 63 7 ASP A 29 ? ? -166.97 -76.56 64 7 LYS A 31 ? ? 51.12 73.39 65 7 ASN A 44 ? ? 69.53 -49.13 66 7 LEU A 50 ? ? -82.16 -86.83 67 7 GLU A 65 ? ? -144.26 -77.82 68 8 LYS A 3 ? ? -48.45 103.29 69 8 VAL A 4 ? ? 61.90 103.64 70 8 TRP A 15 ? ? -69.83 -79.29 71 8 PHE A 16 ? ? 75.10 114.69 72 8 THR A 30 ? ? -146.40 24.59 73 8 LYS A 31 ? ? 67.09 76.37 74 8 TYR A 49 ? ? 75.85 166.81 75 8 ARG A 51 ? ? 71.40 112.76 76 8 SER A 52 ? ? -81.23 -70.37 77 8 GLU A 65 ? ? -160.25 -122.50 78 9 LYS A 3 ? ? -79.14 -97.16 79 9 VAL A 4 ? ? 65.61 117.15 80 9 LYS A 14 ? ? -102.47 -99.14 81 9 ARG A 27 ? ? -36.12 147.65 82 9 ASP A 29 ? ? -82.94 -78.51 83 9 LYS A 31 ? ? 60.09 67.53 84 9 ASN A 45 ? ? -118.53 68.58 85 9 LYS A 48 ? ? -92.50 -93.38 86 9 LEU A 50 ? ? 74.20 -60.51 87 9 ASP A 55 ? ? 66.71 -137.98 88 9 GLU A 67 ? ? -89.45 -136.23 89 9 THR A 76 ? ? -109.14 -158.53 90 10 LYS A 3 ? ? -145.78 -28.65 91 10 LYS A 8 ? ? 59.06 73.12 92 10 LYS A 14 ? ? -95.14 -100.69 93 10 ASP A 29 ? ? -132.42 -72.57 94 10 ARG A 47 ? ? -107.54 -81.25 95 10 GLU A 65 ? ? -144.81 -60.30 96 10 GLU A 67 ? ? -80.12 -85.26 97 10 GLU A 71 ? ? -117.83 -166.81 98 10 THR A 76 ? ? -99.32 -103.39 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 3 ARG A 27 ? ? 0.107 'SIDE CHAIN' 2 4 ARG A 27 ? ? 0.108 'SIDE CHAIN' 3 4 ARG A 51 ? ? 0.083 'SIDE CHAIN' 4 6 ARG A 27 ? ? 0.080 'SIDE CHAIN' 5 7 ARG A 27 ? ? 0.125 'SIDE CHAIN' 6 10 ARG A 19 ? ? 0.086 'SIDE CHAIN' #