HEADER LECTIN 16-MAR-01 1H9P TITLE CRYSTAL STRUCTURE OF DIOCLEA GUIANENSIS SEED LECTIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: LECTIN ALPHA CHAIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: LECTIN BETA CHAIN, LECTIN GAMMA-1 CHAIN, LECTIN GAMMA-2 COMPND 5 CHAIN, SEED LECTIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DIOCLEA GUIANENSIS; SOURCE 3 ORGANISM_TAXID: 99571; SOURCE 4 VARIANT: LASIOPHYLLA; SOURCE 5 TISSUE: SEED KEYWDS LECTIN, LEGUME LECTIN OLIGOMERISATION EXPDTA X-RAY DIFFRACTION AUTHOR A.ROMERO,D.A.WAH,F.GALLEGO DEL SOL,B.S.CAVADA,M.V.RAMOS, AUTHOR 2 T.B.GRANGEIRO,A.H.SAMPAIO,J.J.CALVETE REVDAT 7 13-DEC-23 1H9P 1 REMARK LINK REVDAT 6 24-JUL-19 1H9P 1 REMARK REVDAT 5 08-MAY-19 1H9P 1 REMARK REVDAT 4 05-FEB-14 1H9P 1 COMPND SOURCE REMARK VERSN REVDAT 4 2 1 FORMUL ATOM REVDAT 3 24-FEB-09 1H9P 1 VERSN REVDAT 2 27-NOV-01 1H9P 1 JRNL REVDAT 1 23-MAR-01 1H9P 0 JRNL AUTH D.A.WAH,A.ROMERO,F.GALLEGO,B.S.CAVADA,M.V.RAMOS, JRNL AUTH 2 T.B.GRANGEIRO,A.H.SAMPAIO,J.J.CALVETE JRNL TITL CRYSTAL STRUCTURE OF NATIVE AND CD/CD-SUBSTITUTED DIOCLEA JRNL TITL 2 GUIANENSIS SEED LECTIN. A NOVEL MANGANESE-BINDING SITE AND JRNL TITL 3 STRUCTURAL BASIS OF DIMER-TETRAMER ASSOCIATION JRNL REF J.MOL.BIOL. V. 310 885 2001 JRNL REFN ISSN 0022-2836 JRNL PMID 11453695 JRNL DOI 10.1006/JMBI.2001.4814 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.J.CALVETE,H.H.THOLE,M.RAIDA,C.URBANKE,A.ROMERO, REMARK 1 AUTH 2 T.B.GRANGEIRO,M.V.RAMOS,I.M.ALMEIDA,F.N.GUIMARAES,B.S.CAVADA REMARK 1 TITL MOLECULAR CHARACTERIZATION AND CRYSTALLIZATION OF DIOCLEINAE REMARK 1 TITL 2 LECTINS REMARK 1 REF BIOCHIM.BIOPHYS.ACTA V.1430 367 1999 REMARK 1 REFN ISSN 0006-3002 REMARK 1 PMID 10082964 REMARK 1 DOI 10.1016/S0167-4838(99)00020-5 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.68 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2755151.350 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 15323 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.239 REMARK 3 FREE R VALUE : 0.289 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1067 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.009 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.13 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2239 REMARK 3 BIN R VALUE (WORKING SET) : 0.3130 REMARK 3 BIN FREE R VALUE : 0.3670 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 6.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 165 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.029 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1758 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 128 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.76000 REMARK 3 B22 (A**2) : -5.76000 REMARK 3 B33 (A**2) : 11.51000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.29 REMARK 3 ESD FROM SIGMAA (A) : 0.29 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.36 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.36 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.10 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.770 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.550 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.460 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.070 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.880 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.41 REMARK 3 BSOL : 71.95 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: RESIDUES 118-121 WERE LEFT OUT BECAUSE REMARK 3 OF POOR DENSITY. SIDE CHAINS COULD NOT BE ADDED FOR RESIDUES 117, REMARK 3 122 AND 204 BECAUSE OF THE LACK OF DENSITY REMARK 4 REMARK 4 1H9P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-MAR-01. REMARK 100 THE DEPOSITION ID IS D_1290005993. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-OCT-00 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.40 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : BW7B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8423 REMARK 200 MONOCHROMATOR : TRIANGULAR MONOCHROMATOR REMARK 200 OPTICS : BENT MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15334 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 35.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.04500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : 0.30200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1CVN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALS WERE GROWN BY THE HANGING REMARK 280 DROP VAPOUR DIFFUSION METHOD USING 30% PEG 400, 0.1M MES, PH 6.4 REMARK 280 AND 0.1M CDCL2., PH 6.40, VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 45.15700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 45.15700 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.13800 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 45.15700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 27.06900 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 45.15700 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 81.20700 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 45.15700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 81.20700 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 45.15700 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 27.06900 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 45.15700 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 45.15700 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 54.13800 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 45.15700 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 45.15700 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 54.13800 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 45.15700 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 81.20700 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 45.15700 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 27.06900 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 45.15700 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 27.06900 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 45.15700 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 81.20700 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 45.15700 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 45.15700 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 54.13800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -154.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 90.31400 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 90.31400 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 -1.000000 0.000000 90.31400 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 90.31400 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CD CD A 501 LIES ON A SPECIAL POSITION. REMARK 375 MN MN A 503 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2015 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2040 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2107 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2108 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2117 LIES ON A SPECIAL POSITION. REMARK 400 REMARK 400 COMPOUND REMARK 400 D-MANNOSE/D-GLUCOSE-BINDING LECTIN. REQUIRES CA2+ AND REMARK 400 MN2+ IONS FOR FULL ACTIVITY. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 119 REMARK 465 ILE A 120 REMARK 465 ALA A 121 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 117 OG1 CG2 REMARK 470 ASN A 118 CA C O CB CG OD1 ND2 REMARK 470 ASP A 122 CG OD1 OD2 REMARK 470 SER A 144 CB OG REMARK 470 ARG A 204 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 14 72.24 -102.78 REMARK 500 ILE A 17 40.96 -107.54 REMARK 500 SER A 21 36.29 -81.45 REMARK 500 GLN A 43 58.35 -112.39 REMARK 500 SER A 71 155.59 -44.29 REMARK 500 GLU A 102 157.16 174.10 REMARK 500 ALA A 123 98.90 90.29 REMARK 500 SER A 144 -133.96 67.33 REMARK 500 ALA A 146 131.40 -39.52 REMARK 500 SER A 201 145.34 -173.61 REMARK 500 LEU A 230 29.86 39.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 238 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 8 OE2 REMARK 620 2 ASP A 10 OD2 91.3 REMARK 620 3 ASP A 19 OD1 157.8 100.6 REMARK 620 4 ASP A 19 OD2 155.4 65.3 43.8 REMARK 620 5 HIS A 24 NE2 89.7 103.1 105.6 88.7 REMARK 620 6 HOH A2009 O 90.8 94.7 69.8 98.1 162.2 REMARK 620 7 HOH A2023 O 81.3 167.6 83.5 123.1 86.9 75.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 239 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 10 OD1 REMARK 620 2 ASP A 10 OD2 52.3 REMARK 620 3 TYR A 12 O 76.4 118.9 REMARK 620 4 ASN A 14 OD1 140.1 166.0 67.8 REMARK 620 5 ASP A 19 OD2 100.0 67.5 95.5 100.5 REMARK 620 6 HOH A2011 O 74.8 103.1 91.2 88.5 170.3 REMARK 620 7 HOH A2115 O 122.2 76.3 161.2 95.0 79.6 96.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 504 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 51 NE2 REMARK 620 2 ASP A 192 OD2 82.6 REMARK 620 3 HOH A2127 O 76.7 85.4 REMARK 620 4 HOH A2128 O 162.4 93.1 85.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 501 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 87 OE2 REMARK 620 2 GLU A 87 OE1 85.2 REMARK 620 3 GLU A 87 OE1 55.6 97.4 REMARK 620 4 GLU A 87 OE2 121.1 55.6 85.2 REMARK 620 5 GLU A 183 OE2 80.1 76.7 135.6 122.3 REMARK 620 6 GLU A 183 OE1 129.3 88.6 172.8 95.1 49.6 REMARK 620 7 GLU A 183 OE1 95.1 172.9 88.6 129.2 96.3 85.7 REMARK 620 8 GLU A 183 OE2 122.2 135.6 76.6 80.0 137.0 96.3 49.6 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 502 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 125 OG REMARK 620 2 HIS A 127 NE2 100.2 REMARK 620 3 HOH A2122 O 139.4 67.0 REMARK 620 4 HOH A2123 O 80.1 85.4 61.2 REMARK 620 5 HOH A2124 O 163.1 87.9 57.5 115.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 503 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 205 OD1 REMARK 620 2 ASP A 205 OD1 81.7 REMARK 620 3 ASP A 205 OD2 52.8 121.9 REMARK 620 4 ASP A 205 OD2 121.9 52.8 174.2 REMARK 620 5 HOH A2125 O 99.2 75.1 78.6 101.0 REMARK 620 6 HOH A2125 O 75.0 99.2 100.9 78.6 172.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 238 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 239 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 504 DBREF 1H9P A 1 237 UNP P81637 LECA_DIOGU 1 237 SEQADV 1H9P SER A 190 UNP P81637 GLY 190 CONFLICT SEQRES 1 A 237 ALA ASP THR ILE VAL ALA VAL GLU LEU ASP SER TYR PRO SEQRES 2 A 237 ASN THR ASP ILE GLY ASP PRO SER TYR PRO HIS ILE GLY SEQRES 3 A 237 ILE ASP ILE LYS SER ILE ARG SER LYS SER THR ALA ARG SEQRES 4 A 237 TRP ASN MET GLN THR GLY LYS VAL GLY THR ALA HIS ILE SEQRES 5 A 237 SER TYR ASN SER VAL ALA LYS ARG LEU SER ALA VAL VAL SEQRES 6 A 237 SER TYR THR GLY SER SER SER THR THR VAL SER TYR ASP SEQRES 7 A 237 VAL ASP LEU ASN ASN VAL LEU PRO GLU TRP VAL ARG VAL SEQRES 8 A 237 GLY LEU SER ALA THR THR GLY LEU TYR LYS GLU THR ASN SEQRES 9 A 237 THR ILE LEU SER TRP SER PHE THR SER LYS LEU LYS THR SEQRES 10 A 237 ASN SER ILE ALA ASP ALA ASN SER LEU HIS PHE SER PHE SEQRES 11 A 237 ASN GLN PHE SER GLN ASN PRO LYS ASP LEU ILE LEU GLN SEQRES 12 A 237 SER ASP ALA THR THR ASP SER ASP GLY ASN LEU GLU LEU SEQRES 13 A 237 THR LYS VAL SER SER SER GLY ASP PRO GLN GLY SER SER SEQRES 14 A 237 VAL GLY ARG ALA LEU PHE TYR ALA PRO VAL HIS ILE TRP SEQRES 15 A 237 GLU LYS SER ALA VAL VAL ALA SER PHE ASP ALA THR PHE SEQRES 16 A 237 THR PHE LEU ILE LYS SER PRO ASP ARG ASP PRO ALA ASP SEQRES 17 A 237 GLY ILE THR PHE PHE ILE ALA ASN THR ASP THR SER ILE SEQRES 18 A 237 PRO SER GLY SER GLY GLY ARG LEU LEU GLY LEU PHE PRO SEQRES 19 A 237 ASP ALA ASN HET CD A 238 1 HET CD A 239 1 HET CD A 501 1 HET MN A 502 1 HET MN A 503 1 HET MN A 504 1 HETNAM CD CADMIUM ION HETNAM MN MANGANESE (II) ION FORMUL 2 CD 3(CD 2+) FORMUL 5 MN 3(MN 2+) FORMUL 8 HOH *128(H2 O) HELIX 1 1 ASN A 14 GLY A 18 5 5 HELIX 2 2 ASP A 80 LEU A 85 1 6 HELIX 3 3 GLY A 226 LEU A 230 5 5 SHEET 1 AA 6 SER A 36 ARG A 39 0 SHEET 2 AA 6 HIS A 24 ILE A 29 -1 O ILE A 25 N ALA A 38 SHEET 3 AA 6 ILE A 4 ASP A 10 -1 O ALA A 6 N ASP A 28 SHEET 4 AA 6 GLY A 209 ASN A 216 -1 O ILE A 210 N LEU A 9 SHEET 5 AA 6 TRP A 88 THR A 96 -1 O ARG A 90 N ALA A 215 SHEET 6 AA 6 VAL A 179 HIS A 180 -1 O VAL A 179 N VAL A 89 SHEET 1 AB 7 SER A 36 ARG A 39 0 SHEET 2 AB 7 HIS A 24 ILE A 29 -1 O ILE A 25 N ALA A 38 SHEET 3 AB 7 ILE A 4 ASP A 10 -1 O ALA A 6 N ASP A 28 SHEET 4 AB 7 GLY A 209 ASN A 216 -1 O ILE A 210 N LEU A 9 SHEET 5 AB 7 TRP A 88 THR A 96 -1 O ARG A 90 N ALA A 215 SHEET 6 AB 7 VAL A 170 PHE A 175 -1 O GLY A 171 N ALA A 95 SHEET 7 AB 7 LEU A 140 SER A 144 -1 O ILE A 141 N LEU A 174 SHEET 1 AC 7 SER A 70 ASP A 78 0 SHEET 2 AC 7 ARG A 60 TYR A 67 -1 O LEU A 61 N TYR A 77 SHEET 3 AC 7 VAL A 47 ASN A 55 -1 O THR A 49 N SER A 66 SHEET 4 AC 7 VAL A 188 LEU A 198 -1 O PHE A 191 N TYR A 54 SHEET 5 AC 7 THR A 105 LYS A 116 -1 O THR A 105 N LEU A 198 SHEET 6 AC 7 LEU A 154 GLU A 155 -1 O LEU A 154 N ILE A 106 SHEET 7 AC 7 THR A 147 THR A 148 -1 O THR A 147 N GLU A 155 SHEET 1 AD 6 SER A 70 ASP A 78 0 SHEET 2 AD 6 ARG A 60 TYR A 67 -1 O LEU A 61 N TYR A 77 SHEET 3 AD 6 VAL A 47 ASN A 55 -1 O THR A 49 N SER A 66 SHEET 4 AD 6 VAL A 188 LEU A 198 -1 O PHE A 191 N TYR A 54 SHEET 5 AD 6 THR A 105 LYS A 116 -1 O THR A 105 N LEU A 198 SHEET 6 AD 6 ASN A 124 PHE A 130 -1 O ASN A 124 N LEU A 115 LINK OE2 GLU A 8 CD CD A 238 1555 1555 2.29 LINK OD2 ASP A 10 CD CD A 238 1555 1555 2.05 LINK OD1 ASP A 10 CD CD A 239 1555 1555 2.26 LINK OD2 ASP A 10 CD CD A 239 1555 1555 2.70 LINK O TYR A 12 CD CD A 239 1555 1555 2.37 LINK OD1 ASN A 14 CD CD A 239 1555 1555 2.40 LINK OD1 ASP A 19 CD CD A 238 1555 1555 2.92 LINK OD2 ASP A 19 CD CD A 238 1555 1555 2.97 LINK OD2 ASP A 19 CD CD A 239 1555 1555 2.35 LINK NE2 HIS A 24 CD CD A 238 1555 1555 2.30 LINK NE2 HIS A 51 MN MN A 504 1555 1555 2.15 LINK OE2 GLU A 87 CD CD A 501 6565 1555 2.25 LINK OE1 GLU A 87 CD CD A 501 1555 1555 2.47 LINK OE1 GLU A 87 CD CD A 501 6565 1555 2.47 LINK OE2 GLU A 87 CD CD A 501 1555 1555 2.25 LINK OG SER A 125 MN MN A 502 1555 1555 2.36 LINK NE2 HIS A 127 MN MN A 502 15555 1555 2.54 LINK OE2 GLU A 183 CD CD A 501 1555 1555 2.84 LINK OE1 GLU A 183 CD CD A 501 1555 1555 2.21 LINK OE1 GLU A 183 CD CD A 501 6565 1555 2.21 LINK OE2 GLU A 183 CD CD A 501 6565 1555 2.84 LINK OD2 ASP A 192 MN MN A 504 1555 1555 2.08 LINK OD1 ASP A 205 MN MN A 503 1555 1555 2.31 LINK OD1 ASP A 205 MN MN A 503 7545 1555 2.31 LINK OD2 ASP A 205 MN MN A 503 1555 1555 2.60 LINK OD2 ASP A 205 MN MN A 503 7545 1555 2.60 LINK CD CD A 238 O HOH A2009 1555 1555 1.76 LINK CD CD A 238 O HOH A2023 1555 1555 2.14 LINK CD CD A 239 O HOH A2011 1555 1555 1.94 LINK CD CD A 239 O HOH A2115 1555 1555 2.06 LINK MN MN A 502 O HOH A2122 1555 1555 2.45 LINK MN MN A 502 O HOH A2123 1555 1555 1.82 LINK MN MN A 502 O HOH A2124 1555 1555 2.22 LINK MN MN A 503 O HOH A2125 1555 1555 1.95 LINK MN MN A 503 O HOH A2125 1555 7545 1.95 LINK MN MN A 504 O HOH A2127 1555 1555 2.19 LINK MN MN A 504 O HOH A2128 1555 1555 2.19 CISPEP 1 ALA A 207 ASP A 208 0 7.10 SITE 1 AC1 6 GLU A 8 ASP A 10 ASP A 19 HIS A 24 SITE 2 AC1 6 HOH A2009 HOH A2023 SITE 1 AC2 6 ASP A 10 TYR A 12 ASN A 14 ASP A 19 SITE 2 AC2 6 HOH A2011 HOH A2115 SITE 1 AC3 2 GLU A 87 GLU A 183 SITE 1 AC4 6 SER A 125 HIS A 127 HOH A2121 HOH A2122 SITE 2 AC4 6 HOH A2123 HOH A2124 SITE 1 AC5 2 ASP A 205 HOH A2125 SITE 1 AC6 4 HIS A 51 ASP A 192 HOH A2127 HOH A2128 CRYST1 90.314 90.314 108.276 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011072 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011072 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009236 0.00000