data_1HC8 # _entry.id 1HC8 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.391 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1HC8 pdb_00001hc8 10.2210/pdb1hc8/pdb PDBE EBI-6152 ? ? WWPDB D_1290006152 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2002-05-23 2 'Structure model' 1 1 2011-05-08 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-05-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_struct_conn_angle 5 4 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_asym_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_comp_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_atom_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_comp_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 18 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 19 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 20 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 21 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 22 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 23 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 24 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 25 4 'Structure model' '_pdbx_struct_conn_angle.value' 26 4 'Structure model' '_struct_conn.conn_type_id' 27 4 'Structure model' '_struct_conn.id' 28 4 'Structure model' '_struct_conn.pdbx_dist_value' 29 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 30 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 31 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 32 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 33 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 34 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 35 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 36 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 37 4 'Structure model' '_struct_conn.ptnr1_symmetry' 38 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 39 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 40 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 41 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 42 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 43 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 44 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 45 4 'Structure model' '_struct_conn.ptnr2_symmetry' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1HC8 _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2001-04-27 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 1ACI unspecified 'L11 RIBOSOMAL PROTEIN RNA BINDING DOMAIN, NMR, 20 STRUCTURES' PDB 1C04 unspecified 'IDENTIFICATION OF KNOWN PROTEIN AND RNA STRUCTURES IN A 5 AMAP OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULAMARISMORTUI' PDB 1FOW unspecified 'NMR STRUCTURE OF L11-C76, THE C-TERMINAL DOMAIN OF50S RIBOSOMAL PROTEIN L11, MINIMIZED AVERAGE STRUCTURE' PDB 1FOX unspecified 'NMR STRUCTURE OF L11-C76, THE C-TERMINAL DOMAIN OF50S RIBOSOMAL PROTEIN L11, 33 STRUCTURES' PDB 1FOY unspecified ;THE RNA BINDING DOMAIN OF RIBOSOMAL PROTEIN L11:THREE-DIMENSIONAL STRUCTURE OF THE RNA -BOUND FORM OF THEPROTEIN, NMR, MINIMIZED AVERAGE STRUCTURE ; PDB 1QA6 unspecified 'CRYSTAL STRUCTURE OF A CONSERVED RIBOSOMAL PROTEIN-RNACOMPLEX' PDB 2FOW unspecified ;THE RNA BINDING DOMAIN OF RIBOSOMAL PROTEIN L11:THREE-DIMENSIONAL STRUCTURE OF THE RNA -BOUND FORM OF THEPROTEIN, NMR, 26 STRUCTURES ; # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Conn, G.L.' 1 'Draper, D.E.' 2 'Lattman, E.E.' 3 'Gittis, A.G.' 4 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'A Compact RNA Tertiary Structure Contains a Buried Backbone-K+ Complex' J.Mol.Biol. 318 963 ? 2002 JMOBAK UK 0022-2836 0070 ? 12054794 '10.1016/S0022-2836(02)00147-X' 1 'Crystal Structure of a Conserved Ribosomal Protein-RNA Complex' Science 284 1171 ? 1999 SCIEAS US 0036-8075 0038 ? 10325228 10.1126/SCIENCE.284.5417.1171 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Conn, G.L.' 1 ? primary 'Gittis, A.G.' 2 ? primary 'Lattman, E.E.' 3 ? primary 'Misra, V.K.' 4 ? primary 'Draper, D.E.' 5 ? 1 'Conn, G.L.' 6 ? 1 'Draper, D.E.' 7 ? 1 'Lattman, E.E.' 8 ? 1 'Gittis, A.G.' 9 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'RIBOSOMAL PROTEIN L11' 8167.547 2 ? ? 'C-TERMINAL DOMAIN OF RIBOSOMAL PROTEIN L11' ? 2 polymer man '58 NUCLEOTIDE RIBOSOMAL 23S RNA DOMAIN' 18885.150 2 ? YES 'NTS 1051-1108 FROM E. COLI 23S RRNA' ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 21 ? ? ? ? 4 non-polymer syn 'POTASSIUM ION' 39.098 2 ? ? ? ? 5 non-polymer syn 'OSMIUM ION' 190.230 4 ? ? ? ? 6 water nat water 18.015 13 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no FTFITKTPPAAVLLKKAAGIESGSGEPNRNKVATIKRDKVREIAELKMPDLNAASIEAAMRMIEGTARSMGIVVEN FTFITKTPPAAVLLKKAAGIESGSGEPNRNKVATIKRDKVREIAELKMPDLNAASIEAAMRMIEGTARSMGIVVEN A,B ? 2 polyribonucleotide no yes '(GTP)CCAGGAUGUAGGCUUAGAAGCAGCCAUCAUUUAAAGAAAGCGUAAUAGCUCACUGGU' GCCAGGAUGUAGGCUUAGAAGCAGCCAUCAUUUAAAGAAAGCGUAAUAGCUCACUGGU C,D ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'MAGNESIUM ION' MG 4 'POTASSIUM ION' K 5 'OSMIUM ION' OS 6 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PHE n 1 2 THR n 1 3 PHE n 1 4 ILE n 1 5 THR n 1 6 LYS n 1 7 THR n 1 8 PRO n 1 9 PRO n 1 10 ALA n 1 11 ALA n 1 12 VAL n 1 13 LEU n 1 14 LEU n 1 15 LYS n 1 16 LYS n 1 17 ALA n 1 18 ALA n 1 19 GLY n 1 20 ILE n 1 21 GLU n 1 22 SER n 1 23 GLY n 1 24 SER n 1 25 GLY n 1 26 GLU n 1 27 PRO n 1 28 ASN n 1 29 ARG n 1 30 ASN n 1 31 LYS n 1 32 VAL n 1 33 ALA n 1 34 THR n 1 35 ILE n 1 36 LYS n 1 37 ARG n 1 38 ASP n 1 39 LYS n 1 40 VAL n 1 41 ARG n 1 42 GLU n 1 43 ILE n 1 44 ALA n 1 45 GLU n 1 46 LEU n 1 47 LYS n 1 48 MET n 1 49 PRO n 1 50 ASP n 1 51 LEU n 1 52 ASN n 1 53 ALA n 1 54 ALA n 1 55 SER n 1 56 ILE n 1 57 GLU n 1 58 ALA n 1 59 ALA n 1 60 MET n 1 61 ARG n 1 62 MET n 1 63 ILE n 1 64 GLU n 1 65 GLY n 1 66 THR n 1 67 ALA n 1 68 ARG n 1 69 SER n 1 70 MET n 1 71 GLY n 1 72 ILE n 1 73 VAL n 1 74 VAL n 1 75 GLU n 1 76 ASN n 2 1 GTP n 2 2 C n 2 3 C n 2 4 A n 2 5 G n 2 6 G n 2 7 A n 2 8 U n 2 9 G n 2 10 U n 2 11 A n 2 12 G n 2 13 G n 2 14 C n 2 15 U n 2 16 U n 2 17 A n 2 18 G n 2 19 A n 2 20 A n 2 21 G n 2 22 C n 2 23 A n 2 24 G n 2 25 C n 2 26 C n 2 27 A n 2 28 U n 2 29 C n 2 30 A n 2 31 U n 2 32 U n 2 33 U n 2 34 A n 2 35 A n 2 36 A n 2 37 G n 2 38 A n 2 39 A n 2 40 A n 2 41 G n 2 42 C n 2 43 G n 2 44 U n 2 45 A n 2 46 A n 2 47 U n 2 48 A n 2 49 G n 2 50 C n 2 51 U n 2 52 C n 2 53 A n 2 54 C n 2 55 U n 2 56 G n 2 57 G n 2 58 U n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? ? ? ? ? ? ? ? ? ? 'BACILLUS STEAROTHERMOPHILUS' 1422 ? ? ? ? ? ? ? ? 'ESCHERICHIA COLI' 469008 ? ? ? ? ? ? 'BL21(DE3)' ? ? ? ? ? ? ? PLASMID ? ? ? PET11 ? ? 2 1 sample ? ? ? ? ? ? ? ? ? ? ? ? 'ESCHERICHIA COLI' 562 ? ? ? ? ? ? ? ? 'ESCHERICHIA COLI' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 'RNA SYNTHESIZED BY IN VITRO TRANSCRIPTION USING T7 RNA POLYMERASE' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GTP non-polymer n "GUANOSINE-5'-TRIPHOSPHATE" ? 'C10 H16 N5 O14 P3' 523.180 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 OS non-polymer . 'OSMIUM ION' ? 'Os 3' 190.230 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PHE 1 1 ? ? ? A . n A 1 2 THR 2 2 2 THR THR A . n A 1 3 PHE 3 3 3 PHE PHE A . n A 1 4 ILE 4 4 4 ILE ILE A . n A 1 5 THR 5 5 5 THR THR A . n A 1 6 LYS 6 6 6 LYS LYS A . n A 1 7 THR 7 7 7 THR THR A . n A 1 8 PRO 8 8 8 PRO PRO A . n A 1 9 PRO 9 9 9 PRO PRO A . n A 1 10 ALA 10 10 10 ALA ALA A . n A 1 11 ALA 11 11 11 ALA ALA A . n A 1 12 VAL 12 12 12 VAL VAL A . n A 1 13 LEU 13 13 13 LEU LEU A . n A 1 14 LEU 14 14 14 LEU LEU A . n A 1 15 LYS 15 15 15 LYS LYS A . n A 1 16 LYS 16 16 16 LYS LYS A . n A 1 17 ALA 17 17 17 ALA ALA A . n A 1 18 ALA 18 18 18 ALA ALA A . n A 1 19 GLY 19 19 19 GLY GLY A . n A 1 20 ILE 20 20 20 ILE ILE A . n A 1 21 GLU 21 21 21 GLU GLU A . n A 1 22 SER 22 22 22 SER SER A . n A 1 23 GLY 23 23 23 GLY GLY A . n A 1 24 SER 24 24 24 SER SER A . n A 1 25 GLY 25 25 25 GLY GLY A . n A 1 26 GLU 26 26 26 GLU GLU A . n A 1 27 PRO 27 27 27 PRO PRO A . n A 1 28 ASN 28 28 28 ASN ASN A . n A 1 29 ARG 29 29 29 ARG ARG A . n A 1 30 ASN 30 30 30 ASN ASN A . n A 1 31 LYS 31 31 31 LYS LYS A . n A 1 32 VAL 32 32 32 VAL VAL A . n A 1 33 ALA 33 33 33 ALA ALA A . n A 1 34 THR 34 34 34 THR THR A . n A 1 35 ILE 35 35 35 ILE ILE A . n A 1 36 LYS 36 36 36 LYS LYS A . n A 1 37 ARG 37 37 37 ARG ARG A . n A 1 38 ASP 38 38 38 ASP ASP A . n A 1 39 LYS 39 39 39 LYS LYS A . n A 1 40 VAL 40 40 40 VAL VAL A . n A 1 41 ARG 41 41 41 ARG ARG A . n A 1 42 GLU 42 42 42 GLU GLU A . n A 1 43 ILE 43 43 43 ILE ILE A . n A 1 44 ALA 44 44 44 ALA ALA A . n A 1 45 GLU 45 45 45 GLU GLU A . n A 1 46 LEU 46 46 46 LEU LEU A . n A 1 47 LYS 47 47 47 LYS LYS A . n A 1 48 MET 48 48 48 MET MET A . n A 1 49 PRO 49 49 49 PRO PRO A . n A 1 50 ASP 50 50 50 ASP ASP A . n A 1 51 LEU 51 51 51 LEU LEU A . n A 1 52 ASN 52 52 52 ASN ASN A . n A 1 53 ALA 53 53 53 ALA ALA A . n A 1 54 ALA 54 54 54 ALA ALA A . n A 1 55 SER 55 55 55 SER SER A . n A 1 56 ILE 56 56 56 ILE ILE A . n A 1 57 GLU 57 57 57 GLU GLU A . n A 1 58 ALA 58 58 58 ALA ALA A . n A 1 59 ALA 59 59 59 ALA ALA A . n A 1 60 MET 60 60 60 MET MET A . n A 1 61 ARG 61 61 61 ARG ARG A . n A 1 62 MET 62 62 62 MET MET A . n A 1 63 ILE 63 63 63 ILE ILE A . n A 1 64 GLU 64 64 64 GLU GLU A . n A 1 65 GLY 65 65 65 GLY GLY A . n A 1 66 THR 66 66 66 THR THR A . n A 1 67 ALA 67 67 67 ALA ALA A . n A 1 68 ARG 68 68 68 ARG ARG A . n A 1 69 SER 69 69 69 SER SER A . n A 1 70 MET 70 70 70 MET MET A . n A 1 71 GLY 71 71 71 GLY GLY A . n A 1 72 ILE 72 72 72 ILE ILE A . n A 1 73 VAL 73 73 73 VAL VAL A . n A 1 74 VAL 74 74 74 VAL VAL A . n A 1 75 GLU 75 75 75 GLU GLU A . n A 1 76 ASN 76 76 ? ? ? A . n B 1 1 PHE 1 201 ? ? ? B . n B 1 2 THR 2 202 ? ? ? B . n B 1 3 PHE 3 203 ? ? ? B . n B 1 4 ILE 4 204 ? ? ? B . n B 1 5 THR 5 205 ? ? ? B . n B 1 6 LYS 6 206 206 LYS LYS B . n B 1 7 THR 7 207 207 THR THR B . n B 1 8 PRO 8 208 208 PRO PRO B . n B 1 9 PRO 9 209 209 PRO PRO B . n B 1 10 ALA 10 210 210 ALA ALA B . n B 1 11 ALA 11 211 211 ALA ALA B . n B 1 12 VAL 12 212 212 VAL VAL B . n B 1 13 LEU 13 213 213 LEU LEU B . n B 1 14 LEU 14 214 214 LEU LEU B . n B 1 15 LYS 15 215 215 LYS LYS B . n B 1 16 LYS 16 216 216 LYS LYS B . n B 1 17 ALA 17 217 217 ALA ALA B . n B 1 18 ALA 18 218 218 ALA ALA B . n B 1 19 GLY 19 219 219 GLY GLY B . n B 1 20 ILE 20 220 220 ILE ILE B . n B 1 21 GLU 21 221 221 GLU GLU B . n B 1 22 SER 22 222 222 SER SER B . n B 1 23 GLY 23 223 223 GLY GLY B . n B 1 24 SER 24 224 224 SER SER B . n B 1 25 GLY 25 225 225 GLY GLY B . n B 1 26 GLU 26 226 226 GLU GLU B . n B 1 27 PRO 27 227 227 PRO PRO B . n B 1 28 ASN 28 228 228 ASN ASN B . n B 1 29 ARG 29 229 229 ARG ARG B . n B 1 30 ASN 30 230 230 ASN ASN B . n B 1 31 LYS 31 231 231 LYS LYS B . n B 1 32 VAL 32 232 232 VAL VAL B . n B 1 33 ALA 33 233 233 ALA ALA B . n B 1 34 THR 34 234 234 THR THR B . n B 1 35 ILE 35 235 235 ILE ILE B . n B 1 36 LYS 36 236 236 LYS LYS B . n B 1 37 ARG 37 237 237 ARG ARG B . n B 1 38 ASP 38 238 238 ASP ASP B . n B 1 39 LYS 39 239 239 LYS LYS B . n B 1 40 VAL 40 240 240 VAL VAL B . n B 1 41 ARG 41 241 241 ARG ARG B . n B 1 42 GLU 42 242 242 GLU GLU B . n B 1 43 ILE 43 243 243 ILE ILE B . n B 1 44 ALA 44 244 244 ALA ALA B . n B 1 45 GLU 45 245 245 GLU GLU B . n B 1 46 LEU 46 246 246 LEU LEU B . n B 1 47 LYS 47 247 247 LYS LYS B . n B 1 48 MET 48 248 248 MET MET B . n B 1 49 PRO 49 249 249 PRO PRO B . n B 1 50 ASP 50 250 250 ASP ASP B . n B 1 51 LEU 51 251 251 LEU LEU B . n B 1 52 ASN 52 252 252 ASN ASN B . n B 1 53 ALA 53 253 253 ALA ALA B . n B 1 54 ALA 54 254 254 ALA ALA B . n B 1 55 SER 55 255 255 SER SER B . n B 1 56 ILE 56 256 256 ILE ILE B . n B 1 57 GLU 57 257 257 GLU GLU B . n B 1 58 ALA 58 258 258 ALA ALA B . n B 1 59 ALA 59 259 259 ALA ALA B . n B 1 60 MET 60 260 260 MET MET B . n B 1 61 ARG 61 261 261 ARG ARG B . n B 1 62 MET 62 262 262 MET MET B . n B 1 63 ILE 63 263 263 ILE ILE B . n B 1 64 GLU 64 264 264 GLU GLU B . n B 1 65 GLY 65 265 265 GLY GLY B . n B 1 66 THR 66 266 266 THR THR B . n B 1 67 ALA 67 267 267 ALA ALA B . n B 1 68 ARG 68 268 268 ARG ARG B . n B 1 69 SER 69 269 269 SER SER B . n B 1 70 MET 70 270 270 MET MET B . n B 1 71 GLY 71 271 271 GLY GLY B . n B 1 72 ILE 72 272 272 ILE ILE B . n B 1 73 VAL 73 273 273 VAL VAL B . n B 1 74 VAL 74 274 274 VAL VAL B . n B 1 75 GLU 75 275 275 GLU GLU B . n B 1 76 ASN 76 276 ? ? ? B . n C 2 1 GTP 1 101 101 GTP GTP C . n C 2 2 C 2 102 102 C C C . n C 2 3 C 3 103 103 C C C . n C 2 4 A 4 104 104 A A C . n C 2 5 G 5 105 105 G G C . n C 2 6 G 6 106 106 G G C . n C 2 7 A 7 107 107 A A C . n C 2 8 U 8 108 108 U U C . n C 2 9 G 9 109 109 G G C . n C 2 10 U 10 110 110 U U C . n C 2 11 A 11 111 111 A A C . n C 2 12 G 12 112 112 G G C . n C 2 13 G 13 113 113 G G C . n C 2 14 C 14 114 114 C C C . n C 2 15 U 15 115 115 U U C . n C 2 16 U 16 116 116 U U C . n C 2 17 A 17 117 117 A A C . n C 2 18 G 18 118 118 G G C . n C 2 19 A 19 119 119 A A C . n C 2 20 A 20 120 120 A A C . n C 2 21 G 21 121 121 G G C . n C 2 22 C 22 122 122 C C C . n C 2 23 A 23 123 123 A A C . n C 2 24 G 24 124 124 G G C . n C 2 25 C 25 125 125 C C C . n C 2 26 C 26 126 126 C C C . n C 2 27 A 27 127 127 A A C . n C 2 28 U 28 128 128 U U C . n C 2 29 C 29 129 129 C C C . n C 2 30 A 30 130 130 A A C . n C 2 31 U 31 131 131 U U C . n C 2 32 U 32 132 132 U U C . n C 2 33 U 33 133 133 U U C . n C 2 34 A 34 134 134 A A C . n C 2 35 A 35 135 135 A A C . n C 2 36 A 36 136 136 A A C . n C 2 37 G 37 137 137 G G C . n C 2 38 A 38 138 138 A A C . n C 2 39 A 39 139 139 A A C . n C 2 40 A 40 140 140 A A C . n C 2 41 G 41 141 141 G G C . n C 2 42 C 42 142 142 C C C . n C 2 43 G 43 143 143 G G C . n C 2 44 U 44 144 144 U U C . n C 2 45 A 45 145 145 A A C . n C 2 46 A 46 146 146 A A C . n C 2 47 U 47 147 147 U U C . n C 2 48 A 48 148 148 A A C . n C 2 49 G 49 149 149 G G C . n C 2 50 C 50 150 150 C C C . n C 2 51 U 51 151 151 U U C . n C 2 52 C 52 152 152 C C C . n C 2 53 A 53 153 153 A A C . n C 2 54 C 54 154 154 C C C . n C 2 55 U 55 155 155 U U C . n C 2 56 G 56 156 156 G G C . n C 2 57 G 57 157 157 G G C . n C 2 58 U 58 158 158 U U C . n D 2 1 GTP 1 301 301 GTP GTP D . n D 2 2 C 2 302 302 C C D . n D 2 3 C 3 303 303 C C D . n D 2 4 A 4 304 304 A A D . n D 2 5 G 5 305 305 G G D . n D 2 6 G 6 306 306 G G D . n D 2 7 A 7 307 307 A A D . n D 2 8 U 8 308 308 U U D . n D 2 9 G 9 309 309 G G D . n D 2 10 U 10 310 310 U U D . n D 2 11 A 11 311 311 A A D . n D 2 12 G 12 312 312 G G D . n D 2 13 G 13 313 313 G G D . n D 2 14 C 14 314 314 C C D . n D 2 15 U 15 315 315 U U D . n D 2 16 U 16 316 316 U U D . n D 2 17 A 17 317 317 A A D . n D 2 18 G 18 318 318 G G D . n D 2 19 A 19 319 319 A A D . n D 2 20 A 20 320 320 A A D . n D 2 21 G 21 321 321 G G D . n D 2 22 C 22 322 322 C C D . n D 2 23 A 23 323 323 A A D . n D 2 24 G 24 324 324 G G D . n D 2 25 C 25 325 325 C C D . n D 2 26 C 26 326 326 C C D . n D 2 27 A 27 327 327 A A D . n D 2 28 U 28 328 328 U U D . n D 2 29 C 29 329 329 C C D . n D 2 30 A 30 330 330 A A D . n D 2 31 U 31 331 331 U U D . n D 2 32 U 32 332 332 U U D . n D 2 33 U 33 333 333 U U D . n D 2 34 A 34 334 334 A A D . n D 2 35 A 35 335 335 A A D . n D 2 36 A 36 336 336 A A D . n D 2 37 G 37 337 337 G G D . n D 2 38 A 38 338 338 A A D . n D 2 39 A 39 339 339 A A D . n D 2 40 A 40 340 340 A A D . n D 2 41 G 41 341 341 G G D . n D 2 42 C 42 342 342 C C D . n D 2 43 G 43 343 343 G G D . n D 2 44 U 44 344 344 U U D . n D 2 45 A 45 345 345 A A D . n D 2 46 A 46 346 346 A A D . n D 2 47 U 47 347 347 U U D . n D 2 48 A 48 348 348 A A D . n D 2 49 G 49 349 349 G G D . n D 2 50 C 50 350 350 C C D . n D 2 51 U 51 351 351 U U D . n D 2 52 C 52 352 352 C C D . n D 2 53 A 53 353 353 A A D . n D 2 54 C 54 354 354 C C D . n D 2 55 U 55 355 355 U U D . n D 2 56 G 56 356 356 G G D . n D 2 57 G 57 357 357 G G D . n D 2 58 U 58 358 358 U U D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 MG 1 1159 1159 MG MG C . F 3 MG 1 1160 1160 MG MG C . G 3 MG 1 1161 1161 MG MG C . H 4 K 1 1162 1162 K K C . I 3 MG 1 1163 1163 MG MG C . J 3 MG 1 1164 1164 MG MG C . K 3 MG 1 1165 1165 MG MG C . L 3 MG 1 1166 1166 MG MG C . M 3 MG 1 1167 1167 MG MG C . N 3 MG 1 1168 1168 MG MG C . O 5 OS 1 1169 1169 OS OS C . P 5 OS 1 1170 1170 OS OS C . Q 3 MG 1 1172 1172 MG MG C . R 3 MG 1 1359 1359 MG MG D . S 3 MG 1 1360 1360 MG MG D . T 3 MG 1 1361 1361 MG MG D . U 4 K 1 1362 1362 K K D . V 3 MG 1 1363 1363 MG MG D . W 3 MG 1 1364 1364 MG MG D . X 3 MG 1 1365 1365 MG MG D . Y 3 MG 1 1366 1366 MG MG D . Z 3 MG 1 1367 1367 MG MG D . AA 3 MG 1 1368 1368 MG MG D . BA 3 MG 1 1369 1369 MG MG D . CA 5 OS 1 1370 1370 OS OS D . DA 5 OS 1 1371 1371 OS OS D . EA 3 MG 1 1372 1372 MG MG D . FA 6 HOH 1 2001 2001 HOH HOH A . GA 6 HOH 1 2001 2001 HOH HOH B . HA 6 HOH 1 2001 2001 HOH HOH C . HA 6 HOH 2 2002 2002 HOH HOH C . HA 6 HOH 3 2003 2003 HOH HOH C . HA 6 HOH 4 2004 2004 HOH HOH C . HA 6 HOH 5 2005 2005 HOH HOH C . HA 6 HOH 6 2006 2006 HOH HOH C . IA 6 HOH 1 2001 2001 HOH HOH D . IA 6 HOH 2 2002 2002 HOH HOH D . IA 6 HOH 3 2003 2003 HOH HOH D . IA 6 HOH 4 2004 2004 HOH HOH D . IA 6 HOH 5 2005 2005 HOH HOH D . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A THR 2 ? OG1 ? A THR 2 OG1 2 1 Y 1 A THR 2 ? CG2 ? A THR 2 CG2 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 0.9 ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 MLPHARE phasing . ? 4 # _cell.entry_id 1HC8 _cell.length_a 150.675 _cell.length_b 150.675 _cell.length_c 63.841 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1HC8 _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 # _exptl.entry_id 1HC8 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.35 _exptl_crystal.density_percent_sol 70 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.50 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'PEG 600, MAGNESIUM ACETATE, COBALT HEXAMINE CHLORIDE, SODIUM CACODYLATE, KCL, pH 6.50' # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU IMAGE PLATE' _diffrn_detector.pdbx_collection_date 1998-09-09 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.13951 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X4A' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X4A _diffrn_source.pdbx_wavelength 1.13951 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 1HC8 _reflns.observed_criterion_sigma_I 0.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 20.000 _reflns.d_resolution_high 2.800 _reflns.number_obs 17542 _reflns.number_all ? _reflns.percent_possible_obs 94.5 _reflns.pdbx_Rmerge_I_obs 0.24000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 5.9000 _reflns.B_iso_Wilson_estimate 75.50 _reflns.pdbx_redundancy 5.000 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.80 _reflns_shell.d_res_low 2.93 _reflns_shell.percent_possible_all 88.7 _reflns_shell.Rmerge_I_obs 0.27000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 4.00 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 1HC8 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 17542 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF 10000 _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.00 _refine.ls_d_res_high 2.80 _refine.ls_percent_reflns_obs 94.5 _refine.ls_R_factor_obs 0.217 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.217 _refine.ls_R_factor_R_free 0.253 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 7.80 _refine.ls_number_reflns_R_free 1373 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details CNS _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD USING AMPLITUDES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1063 _refine_hist.pdbx_number_atoms_nucleic_acid 2504 _refine_hist.pdbx_number_atoms_ligand 27 _refine_hist.number_atoms_solvent 13 _refine_hist.number_atoms_total 3607 _refine_hist.d_res_high 2.80 _refine_hist.d_res_low 20.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.006 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.030 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 27 _refine_ls_shell.d_res_high 2.80 _refine_ls_shell.d_res_low 2.84 _refine_ls_shell.number_reflns_R_work 525 _refine_ls_shell.R_factor_R_work 0.368 _refine_ls_shell.percent_reflns_obs 88.7 _refine_ls_shell.R_factor_R_free 0.425 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free 7.8 _refine_ls_shell.number_reflns_R_free 48 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.pdbx_refine_id _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file 'X-RAY DIFFRACTION' 1 PROTEIN.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 DNA-RNA.PARAM DNA-RNA.TOP 'X-RAY DIFFRACTION' 3 WATER.PARAM WATER.TOP 'X-RAY DIFFRACTION' 4 ION.PARAM ION.TOP # _struct_ncs_oper.id 1 _struct_ncs_oper.code given _struct_ncs_oper.details ? _struct_ncs_oper.matrix[1][1] 0.043157 _struct_ncs_oper.matrix[1][2] -0.998994 _struct_ncs_oper.matrix[1][3] -0.012207 _struct_ncs_oper.matrix[2][1] -0.392208 _struct_ncs_oper.matrix[2][2] -0.005704 _struct_ncs_oper.matrix[2][3] -0.919859 _struct_ncs_oper.matrix[3][1] 0.918863 _struct_ncs_oper.matrix[3][2] 0.044486 _struct_ncs_oper.matrix[3][3] -0.392060 _struct_ncs_oper.vector[1] 166.83000 _struct_ncs_oper.vector[2] 180.47920 _struct_ncs_oper.vector[3] -58.80740 # _database_PDB_matrix.entry_id 1HC8 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1HC8 _struct.title 'CRYSTAL STRUCTURE OF A CONSERVED RIBOSOMAL PROTEIN-RNA COMPLEX' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1HC8 _struct_keywords.pdbx_keywords RIBOSOME _struct_keywords.text 'RIBOSOME, RIBOSOMAL RNA, TERTIARY STRUCTURE, RNA-PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 4 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 3 ? M N N 3 ? N N N 3 ? O N N 5 ? P N N 5 ? Q N N 3 ? R N N 3 ? S N N 3 ? T N N 3 ? U N N 4 ? V N N 3 ? W N N 3 ? X N N 3 ? Y N N 3 ? Z N N 3 ? AA N N 3 ? BA N N 3 ? CA N N 5 ? DA N N 5 ? EA N N 3 ? FA N N 6 ? GA N N 6 ? HA N N 6 ? IA N N 6 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP RL11_BACST 1 ? ? P56210 ? 2 PDB 1HC8 2 ? ? 1HC8 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1HC8 A 1 ? 76 ? P56210 58 ? 133 ? 1 76 2 1 1HC8 B 1 ? 76 ? P56210 58 ? 133 ? 201 276 3 2 1HC8 C 1 ? 58 ? 1HC8 101 ? 158 ? 101 158 4 2 1HC8 D 1 ? 58 ? 1HC8 301 ? 358 ? 301 358 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PQS dimeric 2 2 author_and_software_defined_assembly PQS dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,E,F,G,H,I,J,K,L,M,N,O,P,Q,FA,HA 2 1 B,D,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,GA,IA # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ;COMPLEX OF THE RIBOSOMAL PROTEIN L11 AND THERIBOSOMAL 23S RNA FRAGMENT ; # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ALA A 10 ? ALA A 17 ? ALA A 10 ALA A 17 1 ? 8 HELX_P HELX_P2 2 ARG A 37 ? MET A 48 ? ARG A 37 MET A 48 1 ? 12 HELX_P HELX_P3 4 GLU A 57 ? SER A 69 ? GLU A 57 SER A 69 1 ? 13 HELX_P HELX_P4 5 ALA B 10 ? ALA B 17 ? ALA B 210 ALA B 217 1 ? 8 HELX_P HELX_P5 6 ARG B 37 ? MET B 48 ? ARG B 237 MET B 248 1 ? 12 HELX_P HELX_P6 8 GLU B 57 ? SER B 69 ? GLU B 257 SER B 269 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? C GTP 1 "O3'" ? ? ? 1_555 C C 2 P ? ? C GTP 101 C C 102 1_555 ? ? ? ? ? ? ? 1.608 ? ? covale2 covale both ? D GTP 1 "O3'" ? ? ? 1_555 D C 2 P ? ? D GTP 301 D C 302 1_555 ? ? ? ? ? ? ? 1.602 ? ? metalc1 metalc ? ? C GTP 1 O3B ? ? ? 1_555 L MG . MG ? ? C GTP 101 C MG 1166 1_555 ? ? ? ? ? ? ? 2.867 ? ? metalc2 metalc ? ? C GTP 1 O1B ? ? ? 1_555 L MG . MG ? ? C GTP 101 C MG 1166 1_555 ? ? ? ? ? ? ? 2.810 ? ? metalc3 metalc ? ? C GTP 1 O2B ? ? ? 7_556 W MG . MG ? ? C GTP 101 D MG 1364 1_555 ? ? ? ? ? ? ? 2.793 ? ? metalc4 metalc ? ? C GTP 1 N7 ? ? ? 7_556 W MG . MG ? ? C GTP 101 D MG 1364 1_555 ? ? ? ? ? ? ? 2.988 ? ? metalc5 metalc ? ? C U 16 OP1 ? ? ? 1_555 K MG . MG ? ? C U 116 C MG 1165 1_555 ? ? ? ? ? ? ? 2.183 ? ? metalc6 metalc ? ? C A 19 "O3'" ? ? ? 1_555 H K . K ? ? C A 119 C K 1162 1_555 ? ? ? ? ? ? ? 3.353 ? ? metalc7 metalc ? ? C A 20 OP2 ? ? ? 1_555 H K . K ? ? C A 120 C K 1162 1_555 ? ? ? ? ? ? ? 2.823 ? ? metalc8 metalc ? ? C A 20 OP2 ? ? ? 1_555 I MG . MG ? ? C A 120 C MG 1163 1_555 ? ? ? ? ? ? ? 2.379 ? ? metalc9 metalc ? ? C C 22 OP1 ? ? ? 1_555 H K . K ? ? C C 122 C K 1162 1_555 ? ? ? ? ? ? ? 2.632 ? ? metalc10 metalc ? ? C C 22 OP2 ? ? ? 1_555 H K . K ? ? C C 122 C K 1162 1_555 ? ? ? ? ? ? ? 2.976 ? ? metalc11 metalc ? ? C C 22 "O5'" ? ? ? 1_555 H K . K ? ? C C 122 C K 1162 1_555 ? ? ? ? ? ? ? 3.323 ? ? metalc12 metalc ? ? C C 22 OP1 ? ? ? 1_555 I MG . MG ? ? C C 122 C MG 1163 1_555 ? ? ? ? ? ? ? 2.168 ? ? metalc13 metalc ? ? C A 23 OP1 ? ? ? 1_555 H K . K ? ? C A 123 C K 1162 1_555 ? ? ? ? ? ? ? 2.714 ? ? metalc14 metalc ? ? C A 23 OP2 ? ? ? 1_555 M MG . MG ? ? C A 123 C MG 1167 1_555 ? ? ? ? ? ? ? 2.119 ? ? metalc15 metalc ? ? C U 44 O4 ? ? ? 1_555 M MG . MG ? ? C U 144 C MG 1167 1_555 ? ? ? ? ? ? ? 2.006 ? ? metalc16 metalc ? ? C A 48 OP1 ? ? ? 1_555 G MG . MG ? ? C A 148 C MG 1161 1_555 ? ? ? ? ? ? ? 2.214 ? ? metalc17 metalc ? ? C U 58 O4 ? ? ? 7_556 Y MG . MG ? ? C U 158 D MG 1366 1_555 ? ? ? ? ? ? ? 2.487 ? ? metalc18 metalc ? ? J MG . MG ? ? ? 1_555 HA HOH . O ? ? C MG 1164 C HOH 2001 1_555 ? ? ? ? ? ? ? 2.458 ? ? metalc19 metalc ? ? K MG . MG ? ? ? 1_555 D A 36 OP1 ? ? C MG 1165 D A 336 1_555 ? ? ? ? ? ? ? 2.324 ? ? metalc20 metalc ? ? L MG . MG ? ? ? 1_555 D U 58 O4 ? ? C MG 1166 D U 358 7_556 ? ? ? ? ? ? ? 2.559 ? ? metalc21 metalc ? ? D GTP 1 O1B ? ? ? 1_555 W MG . MG ? ? D GTP 301 D MG 1364 1_555 ? ? ? ? ? ? ? 2.356 ? ? metalc22 metalc ? ? D GTP 1 O1G ? ? ? 1_555 Y MG . MG ? ? D GTP 301 D MG 1366 1_555 ? ? ? ? ? ? ? 2.119 ? ? metalc23 metalc ? ? D A 11 OP2 ? ? ? 1_555 X MG . MG ? ? D A 311 D MG 1365 1_555 ? ? ? ? ? ? ? 2.189 ? ? metalc24 metalc ? ? D G 13 OP2 ? ? ? 1_555 EA MG . MG ? ? D G 313 D MG 1372 1_555 ? ? ? ? ? ? ? 2.731 ? ? metalc25 metalc ? ? D G 13 N7 ? ? ? 1_555 EA MG . MG ? ? D G 313 D MG 1372 1_555 ? ? ? ? ? ? ? 3.094 ? ? metalc26 metalc ? ? D A 19 "O3'" ? ? ? 1_555 U K . K ? ? D A 319 D K 1362 1_555 ? ? ? ? ? ? ? 3.169 ? ? metalc27 metalc ? ? D A 20 OP2 ? ? ? 1_555 U K . K ? ? D A 320 D K 1362 1_555 ? ? ? ? ? ? ? 2.744 ? ? metalc28 metalc ? ? D A 20 OP2 ? ? ? 1_555 V MG . MG ? ? D A 320 D MG 1363 1_555 ? ? ? ? ? ? ? 2.390 ? ? metalc29 metalc ? ? D A 20 OP1 ? ? ? 1_555 EA MG . MG ? ? D A 320 D MG 1372 1_555 ? ? ? ? ? ? ? 2.999 ? ? metalc30 metalc ? ? D C 22 OP1 ? ? ? 1_555 U K . K ? ? D C 322 D K 1362 1_555 ? ? ? ? ? ? ? 2.920 ? ? metalc31 metalc ? ? D C 22 "O5'" ? ? ? 1_555 U K . K ? ? D C 322 D K 1362 1_555 ? ? ? ? ? ? ? 3.460 ? ? metalc32 metalc ? ? D C 22 OP2 ? ? ? 1_555 U K . K ? ? D C 322 D K 1362 1_555 ? ? ? ? ? ? ? 3.337 ? ? metalc33 metalc ? ? D C 22 OP1 ? ? ? 1_555 V MG . MG ? ? D C 322 D MG 1363 1_555 ? ? ? ? ? ? ? 2.380 ? ? metalc34 metalc ? ? D A 23 OP1 ? ? ? 1_555 U K . K ? ? D A 323 D K 1362 1_555 ? ? ? ? ? ? ? 2.769 ? ? metalc35 metalc ? ? D A 23 OP2 ? ? ? 1_555 Z MG . MG ? ? D A 323 D MG 1367 1_555 ? ? ? ? ? ? ? 2.229 ? ? metalc36 metalc ? ? D U 44 O4 ? ? ? 1_555 Z MG . MG ? ? D U 344 D MG 1367 1_555 ? ? ? ? ? ? ? 1.910 ? ? metalc37 metalc ? ? D A 48 OP1 ? ? ? 1_555 T MG . MG ? ? D A 348 D MG 1361 1_555 ? ? ? ? ? ? ? 2.197 ? ? hydrog1 hydrog ? ? C GTP 1 N1 ? ? ? 1_555 C U 58 O2 ? ? C GTP 101 C U 158 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog2 hydrog ? ? C GTP 1 O6 ? ? ? 1_555 C U 58 N3 ? ? C GTP 101 C U 158 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog3 hydrog ? ? C C 2 N3 ? ? ? 1_555 C G 57 N1 ? ? C C 102 C G 157 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? C C 2 N4 ? ? ? 1_555 C G 57 O6 ? ? C C 102 C G 157 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? C C 2 O2 ? ? ? 1_555 C G 57 N2 ? ? C C 102 C G 157 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? C C 3 N3 ? ? ? 1_555 C G 56 N1 ? ? C C 103 C G 156 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? C C 3 N4 ? ? ? 1_555 C G 56 O6 ? ? C C 103 C G 156 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? C C 3 O2 ? ? ? 1_555 C G 56 N2 ? ? C C 103 C G 156 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? C A 4 N1 ? ? ? 1_555 C U 55 N3 ? ? C A 104 C U 155 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? C A 4 N6 ? ? ? 1_555 C U 55 O4 ? ? C A 104 C U 155 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? C G 5 N2 ? ? ? 1_555 C A 35 N3 ? ? C G 105 C A 135 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog12 hydrog ? ? C G 5 N1 ? ? ? 1_555 C C 54 N3 ? ? C G 105 C C 154 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? C G 5 N2 ? ? ? 1_555 C C 54 O2 ? ? C G 105 C C 154 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? C G 5 O6 ? ? ? 1_555 C C 54 N4 ? ? C G 105 C C 154 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? C G 6 N2 ? ? ? 1_555 C A 53 N7 ? ? C G 106 C A 153 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog16 hydrog ? ? C G 6 N3 ? ? ? 1_555 C A 53 N6 ? ? C G 106 C A 153 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog17 hydrog ? ? C A 7 N1 ? ? ? 1_555 C U 31 N3 ? ? C A 107 C U 131 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? C A 7 N6 ? ? ? 1_555 C U 31 O4 ? ? C A 107 C U 131 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? C U 8 N3 ? ? ? 1_555 C A 30 N1 ? ? C U 108 C A 130 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? C U 8 O4 ? ? ? 1_555 C A 30 N6 ? ? C U 108 C A 130 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? C G 9 N1 ? ? ? 1_555 C C 29 N3 ? ? C G 109 C C 129 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? C G 9 N2 ? ? ? 1_555 C C 29 O2 ? ? C G 109 C C 129 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? C G 9 O6 ? ? ? 1_555 C C 29 N4 ? ? C G 109 C C 129 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? C U 10 N3 ? ? ? 1_555 C A 38 N7 ? ? C U 110 C A 138 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog25 hydrog ? ? C U 10 O4 ? ? ? 1_555 C A 38 N6 ? ? C U 110 C A 138 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog26 hydrog ? ? C G 12 N1 ? ? ? 1_555 C C 26 N3 ? ? C G 112 C C 126 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? C G 12 N2 ? ? ? 1_555 C C 26 O2 ? ? C G 112 C C 126 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? C G 12 O6 ? ? ? 1_555 C C 26 N4 ? ? C G 112 C C 126 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? C G 13 N1 ? ? ? 1_555 C C 25 N3 ? ? C G 113 C C 125 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? C G 13 N2 ? ? ? 1_555 C C 25 O2 ? ? C G 113 C C 125 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? C G 13 O6 ? ? ? 1_555 C C 25 N4 ? ? C G 113 C C 125 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? C C 14 N3 ? ? ? 1_555 C G 24 N1 ? ? C C 114 C G 124 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? C C 14 N4 ? ? ? 1_555 C G 24 O6 ? ? C C 114 C G 124 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? C C 14 O2 ? ? ? 1_555 C G 24 N2 ? ? C C 114 C G 124 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? C U 15 O2 ? ? ? 1_555 C A 23 N6 ? ? C U 115 C A 123 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog36 hydrog ? ? C G 21 N1 ? ? ? 1_555 C G 41 O6 ? ? C G 121 C G 141 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog37 hydrog ? ? C G 21 N2 ? ? ? 1_555 C G 41 N7 ? ? C G 121 C G 141 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog38 hydrog ? ? C G 21 O6 ? ? ? 1_555 C C 50 N4 ? ? C G 121 C C 150 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog39 hydrog ? ? C C 22 N3 ? ? ? 1_555 C C 42 N4 ? ? C C 122 C C 142 1_555 ? ? ? ? ? ? 'C-C MISPAIR' ? ? ? hydrog40 hydrog ? ? C C 22 N4 ? ? ? 1_555 C G 49 O6 ? ? C C 122 C G 149 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog41 hydrog ? ? C U 32 N3 ? ? ? 1_555 C A 36 N1 ? ? C U 132 C A 136 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog42 hydrog ? ? C U 32 O2 ? ? ? 1_555 C A 36 N6 ? ? C U 132 C A 136 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog43 hydrog ? ? C G 37 N1 ? ? ? 1_555 C C 52 N3 ? ? C G 137 C C 152 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? C G 37 N2 ? ? ? 1_555 C C 52 O2 ? ? C G 137 C C 152 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? C G 37 O6 ? ? ? 1_555 C C 52 N4 ? ? C G 137 C C 152 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? C A 40 N1 ? ? ? 1_555 C U 51 N3 ? ? C A 140 C U 151 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? C A 40 N6 ? ? ? 1_555 C U 51 O4 ? ? C A 140 C U 151 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? C G 41 N1 ? ? ? 1_555 C C 50 N3 ? ? C G 141 C C 150 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? C G 41 N2 ? ? ? 1_555 C C 50 O2 ? ? C G 141 C C 150 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? C G 41 O6 ? ? ? 1_555 C C 50 N4 ? ? C G 141 C C 150 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? C C 42 N3 ? ? ? 1_555 C G 49 N1 ? ? C C 142 C G 149 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? C C 42 N4 ? ? ? 1_555 C G 49 O6 ? ? C C 142 C G 149 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? C C 42 O2 ? ? ? 1_555 C G 49 N2 ? ? C C 142 C G 149 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? C G 43 N2 ? ? ? 1_555 C A 48 N7 ? ? C G 143 C A 148 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog55 hydrog ? ? C G 43 N3 ? ? ? 1_555 C A 48 N6 ? ? C G 143 C A 148 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog56 hydrog ? ? D GTP 1 N1 ? ? ? 1_555 D U 58 O2 ? ? D GTP 301 D U 358 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog57 hydrog ? ? D GTP 1 O6 ? ? ? 1_555 D U 58 N3 ? ? D GTP 301 D U 358 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog58 hydrog ? ? D C 2 N3 ? ? ? 1_555 D G 57 N1 ? ? D C 302 D G 357 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? D C 2 N4 ? ? ? 1_555 D G 57 O6 ? ? D C 302 D G 357 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? D C 2 O2 ? ? ? 1_555 D G 57 N2 ? ? D C 302 D G 357 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? D C 3 N3 ? ? ? 1_555 D G 56 N1 ? ? D C 303 D G 356 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? D C 3 N4 ? ? ? 1_555 D G 56 O6 ? ? D C 303 D G 356 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? D C 3 O2 ? ? ? 1_555 D G 56 N2 ? ? D C 303 D G 356 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? D A 4 N1 ? ? ? 1_555 D U 55 N3 ? ? D A 304 D U 355 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? D A 4 N6 ? ? ? 1_555 D U 55 O4 ? ? D A 304 D U 355 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? D G 5 N2 ? ? ? 1_555 D A 35 N3 ? ? D G 305 D A 335 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog67 hydrog ? ? D G 5 N1 ? ? ? 1_555 D C 54 N3 ? ? D G 305 D C 354 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? D G 5 N2 ? ? ? 1_555 D C 54 O2 ? ? D G 305 D C 354 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? D G 5 O6 ? ? ? 1_555 D C 54 N4 ? ? D G 305 D C 354 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? D G 6 N2 ? ? ? 1_555 D A 53 N7 ? ? D G 306 D A 353 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog71 hydrog ? ? D G 6 N3 ? ? ? 1_555 D A 53 N6 ? ? D G 306 D A 353 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog72 hydrog ? ? D A 7 N1 ? ? ? 1_555 D U 31 N3 ? ? D A 307 D U 331 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? D A 7 N6 ? ? ? 1_555 D U 31 O4 ? ? D A 307 D U 331 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? D U 8 N3 ? ? ? 1_555 D A 30 N1 ? ? D U 308 D A 330 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? D U 8 O4 ? ? ? 1_555 D A 30 N6 ? ? D U 308 D A 330 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? D G 9 N1 ? ? ? 1_555 D C 29 N3 ? ? D G 309 D C 329 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? D G 9 N2 ? ? ? 1_555 D C 29 O2 ? ? D G 309 D C 329 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? D G 9 O6 ? ? ? 1_555 D C 29 N4 ? ? D G 309 D C 329 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? D U 10 N3 ? ? ? 1_555 D A 38 N7 ? ? D U 310 D A 338 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog80 hydrog ? ? D U 10 O4 ? ? ? 1_555 D A 38 N6 ? ? D U 310 D A 338 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog81 hydrog ? ? D G 12 N1 ? ? ? 1_555 D C 26 N3 ? ? D G 312 D C 326 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? D G 12 N2 ? ? ? 1_555 D C 26 O2 ? ? D G 312 D C 326 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? D G 12 O6 ? ? ? 1_555 D C 26 N4 ? ? D G 312 D C 326 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? D G 13 N1 ? ? ? 1_555 D C 25 N3 ? ? D G 313 D C 325 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? D G 13 N2 ? ? ? 1_555 D C 25 O2 ? ? D G 313 D C 325 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? D G 13 O6 ? ? ? 1_555 D C 25 N4 ? ? D G 313 D C 325 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? D C 14 N3 ? ? ? 1_555 D G 24 N1 ? ? D C 314 D G 324 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? D C 14 N4 ? ? ? 1_555 D G 24 O6 ? ? D C 314 D G 324 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? D C 14 O2 ? ? ? 1_555 D G 24 N2 ? ? D C 314 D G 324 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? D U 15 O2 ? ? ? 1_555 D A 23 N6 ? ? D U 315 D A 323 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog91 hydrog ? ? D G 21 N1 ? ? ? 1_555 D G 41 O6 ? ? D G 321 D G 341 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog92 hydrog ? ? D G 21 N2 ? ? ? 1_555 D G 41 N7 ? ? D G 321 D G 341 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog93 hydrog ? ? D G 21 O6 ? ? ? 1_555 D C 50 N4 ? ? D G 321 D C 350 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog94 hydrog ? ? D C 22 N3 ? ? ? 1_555 D C 42 N4 ? ? D C 322 D C 342 1_555 ? ? ? ? ? ? 'C-C MISPAIR' ? ? ? hydrog95 hydrog ? ? D C 22 N4 ? ? ? 1_555 D G 49 O6 ? ? D C 322 D G 349 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog96 hydrog ? ? D U 32 N3 ? ? ? 1_555 D A 36 N1 ? ? D U 332 D A 336 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog97 hydrog ? ? D U 32 O2 ? ? ? 1_555 D A 36 N6 ? ? D U 332 D A 336 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog98 hydrog ? ? D G 37 N1 ? ? ? 1_555 D C 52 N3 ? ? D G 337 D C 352 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog99 hydrog ? ? D G 37 N2 ? ? ? 1_555 D C 52 O2 ? ? D G 337 D C 352 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog100 hydrog ? ? D G 37 O6 ? ? ? 1_555 D C 52 N4 ? ? D G 337 D C 352 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog101 hydrog ? ? D A 40 N1 ? ? ? 1_555 D U 51 N3 ? ? D A 340 D U 351 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog102 hydrog ? ? D A 40 N6 ? ? ? 1_555 D U 51 O4 ? ? D A 340 D U 351 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog103 hydrog ? ? D G 41 N1 ? ? ? 1_555 D C 50 N3 ? ? D G 341 D C 350 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog104 hydrog ? ? D G 41 N2 ? ? ? 1_555 D C 50 O2 ? ? D G 341 D C 350 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog105 hydrog ? ? D G 41 O6 ? ? ? 1_555 D C 50 N4 ? ? D G 341 D C 350 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog106 hydrog ? ? D C 42 N3 ? ? ? 1_555 D G 49 N1 ? ? D C 342 D G 349 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog107 hydrog ? ? D C 42 N4 ? ? ? 1_555 D G 49 O6 ? ? D C 342 D G 349 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog108 hydrog ? ? D C 42 O2 ? ? ? 1_555 D G 49 N2 ? ? D C 342 D G 349 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog109 hydrog ? ? D G 43 N2 ? ? ? 1_555 D A 48 N7 ? ? D G 343 D A 348 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog110 hydrog ? ? D G 43 N3 ? ? ? 1_555 D A 48 N6 ? ? D G 343 D A 348 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O3B ? C GTP 1 ? C GTP 101 ? 1_555 MG ? L MG . ? C MG 1166 ? 1_555 O1B ? C GTP 1 ? C GTP 101 ? 1_555 53.5 ? 2 O3B ? C GTP 1 ? C GTP 101 ? 1_555 MG ? L MG . ? C MG 1166 ? 1_555 O4 ? D U 58 ? D U 358 ? 7_556 111.8 ? 3 O1B ? C GTP 1 ? C GTP 101 ? 1_555 MG ? L MG . ? C MG 1166 ? 1_555 O4 ? D U 58 ? D U 358 ? 7_556 62.2 ? 4 O2B ? C GTP 1 ? C GTP 101 ? 7_556 MG ? W MG . ? D MG 1364 ? 1_555 N7 ? C GTP 1 ? C GTP 101 ? 7_556 96.6 ? 5 O2B ? C GTP 1 ? C GTP 101 ? 7_556 MG ? W MG . ? D MG 1364 ? 1_555 O1B ? D GTP 1 ? D GTP 301 ? 1_555 141.6 ? 6 N7 ? C GTP 1 ? C GTP 101 ? 7_556 MG ? W MG . ? D MG 1364 ? 1_555 O1B ? D GTP 1 ? D GTP 301 ? 1_555 121.5 ? 7 OP1 ? C U 16 ? C U 116 ? 1_555 MG ? K MG . ? C MG 1165 ? 1_555 OP1 ? D A 36 ? D A 336 ? 1_555 79.4 ? 8 "O3'" ? C A 19 ? C A 119 ? 1_555 K ? H K . ? C K 1162 ? 1_555 OP2 ? C A 20 ? C A 120 ? 1_555 46.2 ? 9 "O3'" ? C A 19 ? C A 119 ? 1_555 K ? H K . ? C K 1162 ? 1_555 OP1 ? C C 22 ? C C 122 ? 1_555 110.9 ? 10 OP2 ? C A 20 ? C A 120 ? 1_555 K ? H K . ? C K 1162 ? 1_555 OP1 ? C C 22 ? C C 122 ? 1_555 64.9 ? 11 "O3'" ? C A 19 ? C A 119 ? 1_555 K ? H K . ? C K 1162 ? 1_555 OP2 ? C C 22 ? C C 122 ? 1_555 106.3 ? 12 OP2 ? C A 20 ? C A 120 ? 1_555 K ? H K . ? C K 1162 ? 1_555 OP2 ? C C 22 ? C C 122 ? 1_555 83.1 ? 13 OP1 ? C C 22 ? C C 122 ? 1_555 K ? H K . ? C K 1162 ? 1_555 OP2 ? C C 22 ? C C 122 ? 1_555 53.8 ? 14 "O3'" ? C A 19 ? C A 119 ? 1_555 K ? H K . ? C K 1162 ? 1_555 "O5'" ? C C 22 ? C C 122 ? 1_555 150.5 ? 15 OP2 ? C A 20 ? C A 120 ? 1_555 K ? H K . ? C K 1162 ? 1_555 "O5'" ? C C 22 ? C C 122 ? 1_555 110.6 ? 16 OP1 ? C C 22 ? C C 122 ? 1_555 K ? H K . ? C K 1162 ? 1_555 "O5'" ? C C 22 ? C C 122 ? 1_555 48.1 ? 17 OP2 ? C C 22 ? C C 122 ? 1_555 K ? H K . ? C K 1162 ? 1_555 "O5'" ? C C 22 ? C C 122 ? 1_555 46.0 ? 18 "O3'" ? C A 19 ? C A 119 ? 1_555 K ? H K . ? C K 1162 ? 1_555 OP1 ? C A 23 ? C A 123 ? 1_555 141.8 ? 19 OP2 ? C A 20 ? C A 120 ? 1_555 K ? H K . ? C K 1162 ? 1_555 OP1 ? C A 23 ? C A 123 ? 1_555 147.7 ? 20 OP1 ? C C 22 ? C C 122 ? 1_555 K ? H K . ? C K 1162 ? 1_555 OP1 ? C A 23 ? C A 123 ? 1_555 98.8 ? 21 OP2 ? C C 22 ? C C 122 ? 1_555 K ? H K . ? C K 1162 ? 1_555 OP1 ? C A 23 ? C A 123 ? 1_555 110.6 ? 22 "O5'" ? C C 22 ? C C 122 ? 1_555 K ? H K . ? C K 1162 ? 1_555 OP1 ? C A 23 ? C A 123 ? 1_555 67.7 ? 23 OP2 ? C A 20 ? C A 120 ? 1_555 MG ? I MG . ? C MG 1163 ? 1_555 OP1 ? C C 22 ? C C 122 ? 1_555 80.2 ? 24 OP2 ? C A 23 ? C A 123 ? 1_555 MG ? M MG . ? C MG 1167 ? 1_555 O4 ? C U 44 ? C U 144 ? 1_555 169.7 ? 25 O4 ? C U 58 ? C U 158 ? 7_556 MG ? Y MG . ? D MG 1366 ? 1_555 O1G ? D GTP 1 ? D GTP 301 ? 1_555 98.6 ? 26 OP2 ? D G 13 ? D G 313 ? 1_555 MG ? EA MG . ? D MG 1372 ? 1_555 N7 ? D G 13 ? D G 313 ? 1_555 93.8 ? 27 OP2 ? D G 13 ? D G 313 ? 1_555 MG ? EA MG . ? D MG 1372 ? 1_555 OP1 ? D A 20 ? D A 320 ? 1_555 147.6 ? 28 N7 ? D G 13 ? D G 313 ? 1_555 MG ? EA MG . ? D MG 1372 ? 1_555 OP1 ? D A 20 ? D A 320 ? 1_555 111.7 ? 29 "O3'" ? D A 19 ? D A 319 ? 1_555 K ? U K . ? D K 1362 ? 1_555 OP2 ? D A 20 ? D A 320 ? 1_555 49.5 ? 30 "O3'" ? D A 19 ? D A 319 ? 1_555 K ? U K . ? D K 1362 ? 1_555 OP1 ? D C 22 ? D C 322 ? 1_555 105.2 ? 31 OP2 ? D A 20 ? D A 320 ? 1_555 K ? U K . ? D K 1362 ? 1_555 OP1 ? D C 22 ? D C 322 ? 1_555 56.5 ? 32 "O3'" ? D A 19 ? D A 319 ? 1_555 K ? U K . ? D K 1362 ? 1_555 "O5'" ? D C 22 ? D C 322 ? 1_555 142.1 ? 33 OP2 ? D A 20 ? D A 320 ? 1_555 K ? U K . ? D K 1362 ? 1_555 "O5'" ? D C 22 ? D C 322 ? 1_555 100.0 ? 34 OP1 ? D C 22 ? D C 322 ? 1_555 K ? U K . ? D K 1362 ? 1_555 "O5'" ? D C 22 ? D C 322 ? 1_555 45.3 ? 35 "O3'" ? D A 19 ? D A 319 ? 1_555 K ? U K . ? D K 1362 ? 1_555 OP2 ? D C 22 ? D C 322 ? 1_555 101.6 ? 36 OP2 ? D A 20 ? D A 320 ? 1_555 K ? U K . ? D K 1362 ? 1_555 OP2 ? D C 22 ? D C 322 ? 1_555 75.5 ? 37 OP1 ? D C 22 ? D C 322 ? 1_555 K ? U K . ? D K 1362 ? 1_555 OP2 ? D C 22 ? D C 322 ? 1_555 47.9 ? 38 "O5'" ? D C 22 ? D C 322 ? 1_555 K ? U K . ? D K 1362 ? 1_555 OP2 ? D C 22 ? D C 322 ? 1_555 42.5 ? 39 "O3'" ? D A 19 ? D A 319 ? 1_555 K ? U K . ? D K 1362 ? 1_555 OP1 ? D A 23 ? D A 323 ? 1_555 152.9 ? 40 OP2 ? D A 20 ? D A 320 ? 1_555 K ? U K . ? D K 1362 ? 1_555 OP1 ? D A 23 ? D A 323 ? 1_555 142.0 ? 41 OP1 ? D C 22 ? D C 322 ? 1_555 K ? U K . ? D K 1362 ? 1_555 OP1 ? D A 23 ? D A 323 ? 1_555 95.1 ? 42 "O5'" ? D C 22 ? D C 322 ? 1_555 K ? U K . ? D K 1362 ? 1_555 OP1 ? D A 23 ? D A 323 ? 1_555 64.7 ? 43 OP2 ? D C 22 ? D C 322 ? 1_555 K ? U K . ? D K 1362 ? 1_555 OP1 ? D A 23 ? D A 323 ? 1_555 105.3 ? 44 OP2 ? D A 20 ? D A 320 ? 1_555 MG ? V MG . ? D MG 1363 ? 1_555 OP1 ? D C 22 ? D C 322 ? 1_555 68.6 ? 45 OP2 ? D A 23 ? D A 323 ? 1_555 MG ? Z MG . ? D MG 1367 ? 1_555 O4 ? D U 44 ? D U 344 ? 1_555 156.3 ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 2 ? BA ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? parallel BA 1 2 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 VAL A 32 ? THR A 34 ? VAL A 32 THR A 34 AA 2 ILE A 72 ? GLU A 75 ? ILE A 72 GLU A 75 BA 1 VAL B 32 ? THR B 34 ? VAL B 232 THR B 234 BA 2 ILE B 72 ? GLU B 75 ? ILE B 272 GLU B 275 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N ILE A 35 ? N ILE A 35 O VAL A 73 ? O VAL A 73 BA 1 2 N ILE B 35 ? N ILE B 235 O VAL B 73 ? O VAL B 273 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 1 'BINDING SITE FOR RESIDUE MG C1159' AC2 Software ? ? ? ? 1 'BINDING SITE FOR RESIDUE MG C1161' AC3 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE K C1162' AC4 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE MG C1163' AC5 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE MG C1164' AC6 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE MG C1165' AC7 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE MG C1166' AC8 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE MG C1167' AC9 Software ? ? ? ? 1 'BINDING SITE FOR RESIDUE MG C1168' BC1 Software ? ? ? ? 1 'BINDING SITE FOR RESIDUE OS C1169' BC2 Software ? ? ? ? 1 'BINDING SITE FOR RESIDUE MG C1172' BC3 Software ? ? ? ? 1 'BINDING SITE FOR RESIDUE MG D1360' BC4 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE MG D1361' BC5 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE K D1362' BC6 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE MG D1363' BC7 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE MG D1364' BC8 Software ? ? ? ? 1 'BINDING SITE FOR RESIDUE MG D1365' BC9 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE MG D1366' CC1 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE MG D1367' CC2 Software ? ? ? ? 1 'BINDING SITE FOR RESIDUE MG D1368' CC3 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE MG D1372' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 1 U C 8 ? U C 108 . ? 1_555 ? 2 AC2 1 A C 48 ? A C 148 . ? 1_555 ? 3 AC3 4 A C 19 ? A C 119 . ? 1_555 ? 4 AC3 4 A C 20 ? A C 120 . ? 1_555 ? 5 AC3 4 C C 22 ? C C 122 . ? 1_555 ? 6 AC3 4 A C 23 ? A C 123 . ? 1_555 ? 7 AC4 3 A C 20 ? A C 120 . ? 1_555 ? 8 AC4 3 G C 21 ? G C 121 . ? 1_555 ? 9 AC4 3 C C 22 ? C C 122 . ? 1_555 ? 10 AC5 2 C C 52 ? C C 152 . ? 1_555 ? 11 AC5 2 HOH HA . ? HOH C 2001 . ? 1_555 ? 12 AC6 3 U C 15 ? U C 115 . ? 1_555 ? 13 AC6 3 U C 16 ? U C 116 . ? 1_555 ? 14 AC6 3 A D 36 ? A D 336 . ? 1_555 ? 15 AC7 2 GTP C 1 ? GTP C 101 . ? 1_555 ? 16 AC7 2 U D 58 ? U D 358 . ? 1_555 ? 17 AC8 3 A C 23 ? A C 123 . ? 1_555 ? 18 AC8 3 G C 43 ? G C 143 . ? 1_555 ? 19 AC8 3 U C 44 ? U C 144 . ? 1_555 ? 20 AC9 1 A C 11 ? A C 111 . ? 1_555 ? 21 BC1 1 G C 37 ? G C 137 . ? 1_555 ? 22 BC2 1 G C 13 ? G C 113 . ? 1_555 ? 23 BC3 1 G D 21 ? G D 321 . ? 1_555 ? 24 BC4 2 G D 21 ? G D 321 . ? 1_555 ? 25 BC4 2 A D 48 ? A D 348 . ? 1_555 ? 26 BC5 4 A D 19 ? A D 319 . ? 1_555 ? 27 BC5 4 A D 20 ? A D 320 . ? 1_555 ? 28 BC5 4 C D 22 ? C D 322 . ? 1_555 ? 29 BC5 4 A D 23 ? A D 323 . ? 1_555 ? 30 BC6 3 G D 13 ? G D 313 . ? 1_555 ? 31 BC6 3 A D 20 ? A D 320 . ? 1_555 ? 32 BC6 3 C D 22 ? C D 322 . ? 1_555 ? 33 BC7 2 GTP C 1 ? GTP C 101 . ? 1_555 ? 34 BC7 2 GTP D 1 ? GTP D 301 . ? 1_555 ? 35 BC8 1 A D 11 ? A D 311 . ? 1_555 ? 36 BC9 2 U C 58 ? U C 158 . ? 1_555 ? 37 BC9 2 GTP D 1 ? GTP D 301 . ? 1_555 ? 38 CC1 2 A D 23 ? A D 323 . ? 1_555 ? 39 CC1 2 U D 44 ? U D 344 . ? 1_555 ? 40 CC2 1 G D 6 ? G D 306 . ? 1_555 ? 41 CC3 3 G D 12 ? G D 312 . ? 1_555 ? 42 CC3 3 G D 13 ? G D 313 . ? 1_555 ? 43 CC3 3 A D 20 ? A D 320 . ? 1_555 ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 33 ? ? -176.27 143.61 2 1 SER A 55 ? ? 178.29 159.66 3 1 ALA B 233 ? ? 175.14 161.98 4 1 ARG B 237 ? ? -49.76 -11.52 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 A C 119 ? ? 0.072 'SIDE CHAIN' 2 1 A C 136 ? ? 0.056 'SIDE CHAIN' 3 1 G C 137 ? ? 0.058 'SIDE CHAIN' 4 1 U C 147 ? ? 0.070 'SIDE CHAIN' 5 1 U D 328 ? ? 0.068 'SIDE CHAIN' 6 1 U D 344 ? ? 0.064 'SIDE CHAIN' 7 1 A D 345 ? ? 0.061 'SIDE CHAIN' 8 1 U D 347 ? ? 0.076 'SIDE CHAIN' # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 C GTP 1 C GTP 101 ? G "GUANOSINE-5'-TRIPHOSPHATE" 2 D GTP 1 D GTP 301 ? G "GUANOSINE-5'-TRIPHOSPHATE" # _pdbx_entry_details.entry_id 1HC8 _pdbx_entry_details.compound_details 'CHAIN C, D ENGINEERED MUTATION U1601A' _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A PHE 1 ? A PHE 1 2 1 Y 1 A ASN 76 ? A ASN 76 3 1 Y 1 B PHE 201 ? B PHE 1 4 1 Y 1 B THR 202 ? B THR 2 5 1 Y 1 B PHE 203 ? B PHE 3 6 1 Y 1 B ILE 204 ? B ILE 4 7 1 Y 1 B THR 205 ? B THR 5 8 1 Y 1 B ASN 276 ? B ASN 76 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 ALA N N N N 38 ALA CA C N S 39 ALA C C N N 40 ALA O O N N 41 ALA CB C N N 42 ALA OXT O N N 43 ALA H H N N 44 ALA H2 H N N 45 ALA HA H N N 46 ALA HB1 H N N 47 ALA HB2 H N N 48 ALA HB3 H N N 49 ALA HXT H N N 50 ARG N N N N 51 ARG CA C N S 52 ARG C C N N 53 ARG O O N N 54 ARG CB C N N 55 ARG CG C N N 56 ARG CD C N N 57 ARG NE N N N 58 ARG CZ C N N 59 ARG NH1 N N N 60 ARG NH2 N N N 61 ARG OXT O N N 62 ARG H H N N 63 ARG H2 H N N 64 ARG HA H N N 65 ARG HB2 H N N 66 ARG HB3 H N N 67 ARG HG2 H N N 68 ARG HG3 H N N 69 ARG HD2 H N N 70 ARG HD3 H N N 71 ARG HE H N N 72 ARG HH11 H N N 73 ARG HH12 H N N 74 ARG HH21 H N N 75 ARG HH22 H N N 76 ARG HXT H N N 77 ASN N N N N 78 ASN CA C N S 79 ASN C C N N 80 ASN O O N N 81 ASN CB C N N 82 ASN CG C N N 83 ASN OD1 O N N 84 ASN ND2 N N N 85 ASN OXT O N N 86 ASN H H N N 87 ASN H2 H N N 88 ASN HA H N N 89 ASN HB2 H N N 90 ASN HB3 H N N 91 ASN HD21 H N N 92 ASN HD22 H N N 93 ASN HXT H N N 94 ASP N N N N 95 ASP CA C N S 96 ASP C C N N 97 ASP O O N N 98 ASP CB C N N 99 ASP CG C N N 100 ASP OD1 O N N 101 ASP OD2 O N N 102 ASP OXT O N N 103 ASP H H N N 104 ASP H2 H N N 105 ASP HA H N N 106 ASP HB2 H N N 107 ASP HB3 H N N 108 ASP HD2 H N N 109 ASP HXT H N N 110 C OP3 O N N 111 C P P N N 112 C OP1 O N N 113 C OP2 O N N 114 C "O5'" O N N 115 C "C5'" C N N 116 C "C4'" C N R 117 C "O4'" O N N 118 C "C3'" C N S 119 C "O3'" O N N 120 C "C2'" C N R 121 C "O2'" O N N 122 C "C1'" C N R 123 C N1 N N N 124 C C2 C N N 125 C O2 O N N 126 C N3 N N N 127 C C4 C N N 128 C N4 N N N 129 C C5 C N N 130 C C6 C N N 131 C HOP3 H N N 132 C HOP2 H N N 133 C "H5'" H N N 134 C "H5''" H N N 135 C "H4'" H N N 136 C "H3'" H N N 137 C "HO3'" H N N 138 C "H2'" H N N 139 C "HO2'" H N N 140 C "H1'" H N N 141 C H41 H N N 142 C H42 H N N 143 C H5 H N N 144 C H6 H N N 145 G OP3 O N N 146 G P P N N 147 G OP1 O N N 148 G OP2 O N N 149 G "O5'" O N N 150 G "C5'" C N N 151 G "C4'" C N R 152 G "O4'" O N N 153 G "C3'" C N S 154 G "O3'" O N N 155 G "C2'" C N R 156 G "O2'" O N N 157 G "C1'" C N R 158 G N9 N Y N 159 G C8 C Y N 160 G N7 N Y N 161 G C5 C Y N 162 G C6 C N N 163 G O6 O N N 164 G N1 N N N 165 G C2 C N N 166 G N2 N N N 167 G N3 N N N 168 G C4 C Y N 169 G HOP3 H N N 170 G HOP2 H N N 171 G "H5'" H N N 172 G "H5''" H N N 173 G "H4'" H N N 174 G "H3'" H N N 175 G "HO3'" H N N 176 G "H2'" H N N 177 G "HO2'" H N N 178 G "H1'" H N N 179 G H8 H N N 180 G H1 H N N 181 G H21 H N N 182 G H22 H N N 183 GLU N N N N 184 GLU CA C N S 185 GLU C C N N 186 GLU O O N N 187 GLU CB C N N 188 GLU CG C N N 189 GLU CD C N N 190 GLU OE1 O N N 191 GLU OE2 O N N 192 GLU OXT O N N 193 GLU H H N N 194 GLU H2 H N N 195 GLU HA H N N 196 GLU HB2 H N N 197 GLU HB3 H N N 198 GLU HG2 H N N 199 GLU HG3 H N N 200 GLU HE2 H N N 201 GLU HXT H N N 202 GLY N N N N 203 GLY CA C N N 204 GLY C C N N 205 GLY O O N N 206 GLY OXT O N N 207 GLY H H N N 208 GLY H2 H N N 209 GLY HA2 H N N 210 GLY HA3 H N N 211 GLY HXT H N N 212 GTP PG P N N 213 GTP O1G O N N 214 GTP O2G O N N 215 GTP O3G O N N 216 GTP O3B O N N 217 GTP PB P N N 218 GTP O1B O N N 219 GTP O2B O N N 220 GTP O3A O N N 221 GTP PA P N N 222 GTP O1A O N N 223 GTP O2A O N N 224 GTP "O5'" O N N 225 GTP "C5'" C N N 226 GTP "C4'" C N R 227 GTP "O4'" O N N 228 GTP "C3'" C N S 229 GTP "O3'" O N N 230 GTP "C2'" C N R 231 GTP "O2'" O N N 232 GTP "C1'" C N R 233 GTP N9 N Y N 234 GTP C8 C Y N 235 GTP N7 N Y N 236 GTP C5 C Y N 237 GTP C6 C N N 238 GTP O6 O N N 239 GTP N1 N N N 240 GTP C2 C N N 241 GTP N2 N N N 242 GTP N3 N N N 243 GTP C4 C Y N 244 GTP HOG2 H N N 245 GTP HOG3 H N N 246 GTP HOB2 H N N 247 GTP HOA2 H N N 248 GTP "H5'" H N N 249 GTP "H5''" H N N 250 GTP "H4'" H N N 251 GTP "H3'" H N N 252 GTP "HO3'" H N N 253 GTP "H2'" H N N 254 GTP "HO2'" H N N 255 GTP "H1'" H N N 256 GTP H8 H N N 257 GTP HN1 H N N 258 GTP HN21 H N N 259 GTP HN22 H N N 260 HOH O O N N 261 HOH H1 H N N 262 HOH H2 H N N 263 ILE N N N N 264 ILE CA C N S 265 ILE C C N N 266 ILE O O N N 267 ILE CB C N S 268 ILE CG1 C N N 269 ILE CG2 C N N 270 ILE CD1 C N N 271 ILE OXT O N N 272 ILE H H N N 273 ILE H2 H N N 274 ILE HA H N N 275 ILE HB H N N 276 ILE HG12 H N N 277 ILE HG13 H N N 278 ILE HG21 H N N 279 ILE HG22 H N N 280 ILE HG23 H N N 281 ILE HD11 H N N 282 ILE HD12 H N N 283 ILE HD13 H N N 284 ILE HXT H N N 285 K K K N N 286 LEU N N N N 287 LEU CA C N S 288 LEU C C N N 289 LEU O O N N 290 LEU CB C N N 291 LEU CG C N N 292 LEU CD1 C N N 293 LEU CD2 C N N 294 LEU OXT O N N 295 LEU H H N N 296 LEU H2 H N N 297 LEU HA H N N 298 LEU HB2 H N N 299 LEU HB3 H N N 300 LEU HG H N N 301 LEU HD11 H N N 302 LEU HD12 H N N 303 LEU HD13 H N N 304 LEU HD21 H N N 305 LEU HD22 H N N 306 LEU HD23 H N N 307 LEU HXT H N N 308 LYS N N N N 309 LYS CA C N S 310 LYS C C N N 311 LYS O O N N 312 LYS CB C N N 313 LYS CG C N N 314 LYS CD C N N 315 LYS CE C N N 316 LYS NZ N N N 317 LYS OXT O N N 318 LYS H H N N 319 LYS H2 H N N 320 LYS HA H N N 321 LYS HB2 H N N 322 LYS HB3 H N N 323 LYS HG2 H N N 324 LYS HG3 H N N 325 LYS HD2 H N N 326 LYS HD3 H N N 327 LYS HE2 H N N 328 LYS HE3 H N N 329 LYS HZ1 H N N 330 LYS HZ2 H N N 331 LYS HZ3 H N N 332 LYS HXT H N N 333 MET N N N N 334 MET CA C N S 335 MET C C N N 336 MET O O N N 337 MET CB C N N 338 MET CG C N N 339 MET SD S N N 340 MET CE C N N 341 MET OXT O N N 342 MET H H N N 343 MET H2 H N N 344 MET HA H N N 345 MET HB2 H N N 346 MET HB3 H N N 347 MET HG2 H N N 348 MET HG3 H N N 349 MET HE1 H N N 350 MET HE2 H N N 351 MET HE3 H N N 352 MET HXT H N N 353 MG MG MG N N 354 OS OS OS N N 355 PHE N N N N 356 PHE CA C N S 357 PHE C C N N 358 PHE O O N N 359 PHE CB C N N 360 PHE CG C Y N 361 PHE CD1 C Y N 362 PHE CD2 C Y N 363 PHE CE1 C Y N 364 PHE CE2 C Y N 365 PHE CZ C Y N 366 PHE OXT O N N 367 PHE H H N N 368 PHE H2 H N N 369 PHE HA H N N 370 PHE HB2 H N N 371 PHE HB3 H N N 372 PHE HD1 H N N 373 PHE HD2 H N N 374 PHE HE1 H N N 375 PHE HE2 H N N 376 PHE HZ H N N 377 PHE HXT H N N 378 PRO N N N N 379 PRO CA C N S 380 PRO C C N N 381 PRO O O N N 382 PRO CB C N N 383 PRO CG C N N 384 PRO CD C N N 385 PRO OXT O N N 386 PRO H H N N 387 PRO HA H N N 388 PRO HB2 H N N 389 PRO HB3 H N N 390 PRO HG2 H N N 391 PRO HG3 H N N 392 PRO HD2 H N N 393 PRO HD3 H N N 394 PRO HXT H N N 395 SER N N N N 396 SER CA C N S 397 SER C C N N 398 SER O O N N 399 SER CB C N N 400 SER OG O N N 401 SER OXT O N N 402 SER H H N N 403 SER H2 H N N 404 SER HA H N N 405 SER HB2 H N N 406 SER HB3 H N N 407 SER HG H N N 408 SER HXT H N N 409 THR N N N N 410 THR CA C N S 411 THR C C N N 412 THR O O N N 413 THR CB C N R 414 THR OG1 O N N 415 THR CG2 C N N 416 THR OXT O N N 417 THR H H N N 418 THR H2 H N N 419 THR HA H N N 420 THR HB H N N 421 THR HG1 H N N 422 THR HG21 H N N 423 THR HG22 H N N 424 THR HG23 H N N 425 THR HXT H N N 426 U OP3 O N N 427 U P P N N 428 U OP1 O N N 429 U OP2 O N N 430 U "O5'" O N N 431 U "C5'" C N N 432 U "C4'" C N R 433 U "O4'" O N N 434 U "C3'" C N S 435 U "O3'" O N N 436 U "C2'" C N R 437 U "O2'" O N N 438 U "C1'" C N R 439 U N1 N N N 440 U C2 C N N 441 U O2 O N N 442 U N3 N N N 443 U C4 C N N 444 U O4 O N N 445 U C5 C N N 446 U C6 C N N 447 U HOP3 H N N 448 U HOP2 H N N 449 U "H5'" H N N 450 U "H5''" H N N 451 U "H4'" H N N 452 U "H3'" H N N 453 U "HO3'" H N N 454 U "H2'" H N N 455 U "HO2'" H N N 456 U "H1'" H N N 457 U H3 H N N 458 U H5 H N N 459 U H6 H N N 460 VAL N N N N 461 VAL CA C N S 462 VAL C C N N 463 VAL O O N N 464 VAL CB C N N 465 VAL CG1 C N N 466 VAL CG2 C N N 467 VAL OXT O N N 468 VAL H H N N 469 VAL H2 H N N 470 VAL HA H N N 471 VAL HB H N N 472 VAL HG11 H N N 473 VAL HG12 H N N 474 VAL HG13 H N N 475 VAL HG21 H N N 476 VAL HG22 H N N 477 VAL HG23 H N N 478 VAL HXT H N N 479 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 ALA N CA sing N N 40 ALA N H sing N N 41 ALA N H2 sing N N 42 ALA CA C sing N N 43 ALA CA CB sing N N 44 ALA CA HA sing N N 45 ALA C O doub N N 46 ALA C OXT sing N N 47 ALA CB HB1 sing N N 48 ALA CB HB2 sing N N 49 ALA CB HB3 sing N N 50 ALA OXT HXT sing N N 51 ARG N CA sing N N 52 ARG N H sing N N 53 ARG N H2 sing N N 54 ARG CA C sing N N 55 ARG CA CB sing N N 56 ARG CA HA sing N N 57 ARG C O doub N N 58 ARG C OXT sing N N 59 ARG CB CG sing N N 60 ARG CB HB2 sing N N 61 ARG CB HB3 sing N N 62 ARG CG CD sing N N 63 ARG CG HG2 sing N N 64 ARG CG HG3 sing N N 65 ARG CD NE sing N N 66 ARG CD HD2 sing N N 67 ARG CD HD3 sing N N 68 ARG NE CZ sing N N 69 ARG NE HE sing N N 70 ARG CZ NH1 sing N N 71 ARG CZ NH2 doub N N 72 ARG NH1 HH11 sing N N 73 ARG NH1 HH12 sing N N 74 ARG NH2 HH21 sing N N 75 ARG NH2 HH22 sing N N 76 ARG OXT HXT sing N N 77 ASN N CA sing N N 78 ASN N H sing N N 79 ASN N H2 sing N N 80 ASN CA C sing N N 81 ASN CA CB sing N N 82 ASN CA HA sing N N 83 ASN C O doub N N 84 ASN C OXT sing N N 85 ASN CB CG sing N N 86 ASN CB HB2 sing N N 87 ASN CB HB3 sing N N 88 ASN CG OD1 doub N N 89 ASN CG ND2 sing N N 90 ASN ND2 HD21 sing N N 91 ASN ND2 HD22 sing N N 92 ASN OXT HXT sing N N 93 ASP N CA sing N N 94 ASP N H sing N N 95 ASP N H2 sing N N 96 ASP CA C sing N N 97 ASP CA CB sing N N 98 ASP CA HA sing N N 99 ASP C O doub N N 100 ASP C OXT sing N N 101 ASP CB CG sing N N 102 ASP CB HB2 sing N N 103 ASP CB HB3 sing N N 104 ASP CG OD1 doub N N 105 ASP CG OD2 sing N N 106 ASP OD2 HD2 sing N N 107 ASP OXT HXT sing N N 108 C OP3 P sing N N 109 C OP3 HOP3 sing N N 110 C P OP1 doub N N 111 C P OP2 sing N N 112 C P "O5'" sing N N 113 C OP2 HOP2 sing N N 114 C "O5'" "C5'" sing N N 115 C "C5'" "C4'" sing N N 116 C "C5'" "H5'" sing N N 117 C "C5'" "H5''" sing N N 118 C "C4'" "O4'" sing N N 119 C "C4'" "C3'" sing N N 120 C "C4'" "H4'" sing N N 121 C "O4'" "C1'" sing N N 122 C "C3'" "O3'" sing N N 123 C "C3'" "C2'" sing N N 124 C "C3'" "H3'" sing N N 125 C "O3'" "HO3'" sing N N 126 C "C2'" "O2'" sing N N 127 C "C2'" "C1'" sing N N 128 C "C2'" "H2'" sing N N 129 C "O2'" "HO2'" sing N N 130 C "C1'" N1 sing N N 131 C "C1'" "H1'" sing N N 132 C N1 C2 sing N N 133 C N1 C6 sing N N 134 C C2 O2 doub N N 135 C C2 N3 sing N N 136 C N3 C4 doub N N 137 C C4 N4 sing N N 138 C C4 C5 sing N N 139 C N4 H41 sing N N 140 C N4 H42 sing N N 141 C C5 C6 doub N N 142 C C5 H5 sing N N 143 C C6 H6 sing N N 144 G OP3 P sing N N 145 G OP3 HOP3 sing N N 146 G P OP1 doub N N 147 G P OP2 sing N N 148 G P "O5'" sing N N 149 G OP2 HOP2 sing N N 150 G "O5'" "C5'" sing N N 151 G "C5'" "C4'" sing N N 152 G "C5'" "H5'" sing N N 153 G "C5'" "H5''" sing N N 154 G "C4'" "O4'" sing N N 155 G "C4'" "C3'" sing N N 156 G "C4'" "H4'" sing N N 157 G "O4'" "C1'" sing N N 158 G "C3'" "O3'" sing N N 159 G "C3'" "C2'" sing N N 160 G "C3'" "H3'" sing N N 161 G "O3'" "HO3'" sing N N 162 G "C2'" "O2'" sing N N 163 G "C2'" "C1'" sing N N 164 G "C2'" "H2'" sing N N 165 G "O2'" "HO2'" sing N N 166 G "C1'" N9 sing N N 167 G "C1'" "H1'" sing N N 168 G N9 C8 sing Y N 169 G N9 C4 sing Y N 170 G C8 N7 doub Y N 171 G C8 H8 sing N N 172 G N7 C5 sing Y N 173 G C5 C6 sing N N 174 G C5 C4 doub Y N 175 G C6 O6 doub N N 176 G C6 N1 sing N N 177 G N1 C2 sing N N 178 G N1 H1 sing N N 179 G C2 N2 sing N N 180 G C2 N3 doub N N 181 G N2 H21 sing N N 182 G N2 H22 sing N N 183 G N3 C4 sing N N 184 GLU N CA sing N N 185 GLU N H sing N N 186 GLU N H2 sing N N 187 GLU CA C sing N N 188 GLU CA CB sing N N 189 GLU CA HA sing N N 190 GLU C O doub N N 191 GLU C OXT sing N N 192 GLU CB CG sing N N 193 GLU CB HB2 sing N N 194 GLU CB HB3 sing N N 195 GLU CG CD sing N N 196 GLU CG HG2 sing N N 197 GLU CG HG3 sing N N 198 GLU CD OE1 doub N N 199 GLU CD OE2 sing N N 200 GLU OE2 HE2 sing N N 201 GLU OXT HXT sing N N 202 GLY N CA sing N N 203 GLY N H sing N N 204 GLY N H2 sing N N 205 GLY CA C sing N N 206 GLY CA HA2 sing N N 207 GLY CA HA3 sing N N 208 GLY C O doub N N 209 GLY C OXT sing N N 210 GLY OXT HXT sing N N 211 GTP PG O1G doub N N 212 GTP PG O2G sing N N 213 GTP PG O3G sing N N 214 GTP PG O3B sing N N 215 GTP O2G HOG2 sing N N 216 GTP O3G HOG3 sing N N 217 GTP O3B PB sing N N 218 GTP PB O1B doub N N 219 GTP PB O2B sing N N 220 GTP PB O3A sing N N 221 GTP O2B HOB2 sing N N 222 GTP O3A PA sing N N 223 GTP PA O1A doub N N 224 GTP PA O2A sing N N 225 GTP PA "O5'" sing N N 226 GTP O2A HOA2 sing N N 227 GTP "O5'" "C5'" sing N N 228 GTP "C5'" "C4'" sing N N 229 GTP "C5'" "H5'" sing N N 230 GTP "C5'" "H5''" sing N N 231 GTP "C4'" "O4'" sing N N 232 GTP "C4'" "C3'" sing N N 233 GTP "C4'" "H4'" sing N N 234 GTP "O4'" "C1'" sing N N 235 GTP "C3'" "O3'" sing N N 236 GTP "C3'" "C2'" sing N N 237 GTP "C3'" "H3'" sing N N 238 GTP "O3'" "HO3'" sing N N 239 GTP "C2'" "O2'" sing N N 240 GTP "C2'" "C1'" sing N N 241 GTP "C2'" "H2'" sing N N 242 GTP "O2'" "HO2'" sing N N 243 GTP "C1'" N9 sing N N 244 GTP "C1'" "H1'" sing N N 245 GTP N9 C8 sing Y N 246 GTP N9 C4 sing Y N 247 GTP C8 N7 doub Y N 248 GTP C8 H8 sing N N 249 GTP N7 C5 sing Y N 250 GTP C5 C6 sing N N 251 GTP C5 C4 doub Y N 252 GTP C6 O6 doub N N 253 GTP C6 N1 sing N N 254 GTP N1 C2 sing N N 255 GTP N1 HN1 sing N N 256 GTP C2 N2 sing N N 257 GTP C2 N3 doub N N 258 GTP N2 HN21 sing N N 259 GTP N2 HN22 sing N N 260 GTP N3 C4 sing N N 261 HOH O H1 sing N N 262 HOH O H2 sing N N 263 ILE N CA sing N N 264 ILE N H sing N N 265 ILE N H2 sing N N 266 ILE CA C sing N N 267 ILE CA CB sing N N 268 ILE CA HA sing N N 269 ILE C O doub N N 270 ILE C OXT sing N N 271 ILE CB CG1 sing N N 272 ILE CB CG2 sing N N 273 ILE CB HB sing N N 274 ILE CG1 CD1 sing N N 275 ILE CG1 HG12 sing N N 276 ILE CG1 HG13 sing N N 277 ILE CG2 HG21 sing N N 278 ILE CG2 HG22 sing N N 279 ILE CG2 HG23 sing N N 280 ILE CD1 HD11 sing N N 281 ILE CD1 HD12 sing N N 282 ILE CD1 HD13 sing N N 283 ILE OXT HXT sing N N 284 LEU N CA sing N N 285 LEU N H sing N N 286 LEU N H2 sing N N 287 LEU CA C sing N N 288 LEU CA CB sing N N 289 LEU CA HA sing N N 290 LEU C O doub N N 291 LEU C OXT sing N N 292 LEU CB CG sing N N 293 LEU CB HB2 sing N N 294 LEU CB HB3 sing N N 295 LEU CG CD1 sing N N 296 LEU CG CD2 sing N N 297 LEU CG HG sing N N 298 LEU CD1 HD11 sing N N 299 LEU CD1 HD12 sing N N 300 LEU CD1 HD13 sing N N 301 LEU CD2 HD21 sing N N 302 LEU CD2 HD22 sing N N 303 LEU CD2 HD23 sing N N 304 LEU OXT HXT sing N N 305 LYS N CA sing N N 306 LYS N H sing N N 307 LYS N H2 sing N N 308 LYS CA C sing N N 309 LYS CA CB sing N N 310 LYS CA HA sing N N 311 LYS C O doub N N 312 LYS C OXT sing N N 313 LYS CB CG sing N N 314 LYS CB HB2 sing N N 315 LYS CB HB3 sing N N 316 LYS CG CD sing N N 317 LYS CG HG2 sing N N 318 LYS CG HG3 sing N N 319 LYS CD CE sing N N 320 LYS CD HD2 sing N N 321 LYS CD HD3 sing N N 322 LYS CE NZ sing N N 323 LYS CE HE2 sing N N 324 LYS CE HE3 sing N N 325 LYS NZ HZ1 sing N N 326 LYS NZ HZ2 sing N N 327 LYS NZ HZ3 sing N N 328 LYS OXT HXT sing N N 329 MET N CA sing N N 330 MET N H sing N N 331 MET N H2 sing N N 332 MET CA C sing N N 333 MET CA CB sing N N 334 MET CA HA sing N N 335 MET C O doub N N 336 MET C OXT sing N N 337 MET CB CG sing N N 338 MET CB HB2 sing N N 339 MET CB HB3 sing N N 340 MET CG SD sing N N 341 MET CG HG2 sing N N 342 MET CG HG3 sing N N 343 MET SD CE sing N N 344 MET CE HE1 sing N N 345 MET CE HE2 sing N N 346 MET CE HE3 sing N N 347 MET OXT HXT sing N N 348 PHE N CA sing N N 349 PHE N H sing N N 350 PHE N H2 sing N N 351 PHE CA C sing N N 352 PHE CA CB sing N N 353 PHE CA HA sing N N 354 PHE C O doub N N 355 PHE C OXT sing N N 356 PHE CB CG sing N N 357 PHE CB HB2 sing N N 358 PHE CB HB3 sing N N 359 PHE CG CD1 doub Y N 360 PHE CG CD2 sing Y N 361 PHE CD1 CE1 sing Y N 362 PHE CD1 HD1 sing N N 363 PHE CD2 CE2 doub Y N 364 PHE CD2 HD2 sing N N 365 PHE CE1 CZ doub Y N 366 PHE CE1 HE1 sing N N 367 PHE CE2 CZ sing Y N 368 PHE CE2 HE2 sing N N 369 PHE CZ HZ sing N N 370 PHE OXT HXT sing N N 371 PRO N CA sing N N 372 PRO N CD sing N N 373 PRO N H sing N N 374 PRO CA C sing N N 375 PRO CA CB sing N N 376 PRO CA HA sing N N 377 PRO C O doub N N 378 PRO C OXT sing N N 379 PRO CB CG sing N N 380 PRO CB HB2 sing N N 381 PRO CB HB3 sing N N 382 PRO CG CD sing N N 383 PRO CG HG2 sing N N 384 PRO CG HG3 sing N N 385 PRO CD HD2 sing N N 386 PRO CD HD3 sing N N 387 PRO OXT HXT sing N N 388 SER N CA sing N N 389 SER N H sing N N 390 SER N H2 sing N N 391 SER CA C sing N N 392 SER CA CB sing N N 393 SER CA HA sing N N 394 SER C O doub N N 395 SER C OXT sing N N 396 SER CB OG sing N N 397 SER CB HB2 sing N N 398 SER CB HB3 sing N N 399 SER OG HG sing N N 400 SER OXT HXT sing N N 401 THR N CA sing N N 402 THR N H sing N N 403 THR N H2 sing N N 404 THR CA C sing N N 405 THR CA CB sing N N 406 THR CA HA sing N N 407 THR C O doub N N 408 THR C OXT sing N N 409 THR CB OG1 sing N N 410 THR CB CG2 sing N N 411 THR CB HB sing N N 412 THR OG1 HG1 sing N N 413 THR CG2 HG21 sing N N 414 THR CG2 HG22 sing N N 415 THR CG2 HG23 sing N N 416 THR OXT HXT sing N N 417 U OP3 P sing N N 418 U OP3 HOP3 sing N N 419 U P OP1 doub N N 420 U P OP2 sing N N 421 U P "O5'" sing N N 422 U OP2 HOP2 sing N N 423 U "O5'" "C5'" sing N N 424 U "C5'" "C4'" sing N N 425 U "C5'" "H5'" sing N N 426 U "C5'" "H5''" sing N N 427 U "C4'" "O4'" sing N N 428 U "C4'" "C3'" sing N N 429 U "C4'" "H4'" sing N N 430 U "O4'" "C1'" sing N N 431 U "C3'" "O3'" sing N N 432 U "C3'" "C2'" sing N N 433 U "C3'" "H3'" sing N N 434 U "O3'" "HO3'" sing N N 435 U "C2'" "O2'" sing N N 436 U "C2'" "C1'" sing N N 437 U "C2'" "H2'" sing N N 438 U "O2'" "HO2'" sing N N 439 U "C1'" N1 sing N N 440 U "C1'" "H1'" sing N N 441 U N1 C2 sing N N 442 U N1 C6 sing N N 443 U C2 O2 doub N N 444 U C2 N3 sing N N 445 U N3 C4 sing N N 446 U N3 H3 sing N N 447 U C4 O4 doub N N 448 U C4 C5 sing N N 449 U C5 C6 doub N N 450 U C5 H5 sing N N 451 U C6 H6 sing N N 452 VAL N CA sing N N 453 VAL N H sing N N 454 VAL N H2 sing N N 455 VAL CA C sing N N 456 VAL CA CB sing N N 457 VAL CA HA sing N N 458 VAL C O doub N N 459 VAL C OXT sing N N 460 VAL CB CG1 sing N N 461 VAL CB CG2 sing N N 462 VAL CB HB sing N N 463 VAL CG1 HG11 sing N N 464 VAL CG1 HG12 sing N N 465 VAL CG1 HG13 sing N N 466 VAL CG2 HG21 sing N N 467 VAL CG2 HG22 sing N N 468 VAL CG2 HG23 sing N N 469 VAL OXT HXT sing N N 470 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1HC8 'double helix' 1HC8 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 C GTP 1 1_555 C U 58 1_555 -2.354 -0.581 0.175 -7.297 -10.846 -3.420 1 C_GTP101:U158_C C 101 ? C 158 ? 28 1 1 C C 2 1_555 C G 57 1_555 0.264 -0.071 0.528 -0.145 -17.423 4.280 2 C_C102:G157_C C 102 ? C 157 ? 19 1 1 C C 3 1_555 C G 56 1_555 0.190 -0.290 -0.331 0.158 -6.958 -0.490 3 C_C103:G156_C C 103 ? C 156 ? 19 1 1 C A 4 1_555 C U 55 1_555 -0.245 0.063 0.145 -0.042 1.250 3.841 4 C_A104:U155_C C 104 ? C 155 ? 20 1 1 C G 5 1_555 C C 54 1_555 -0.312 0.074 -0.355 -6.877 -14.412 4.609 5 C_G105:C154_C C 105 ? C 154 ? 19 1 1 C G 6 1_555 C A 53 1_555 6.690 -4.256 -0.086 -11.947 -12.180 -7.499 6 C_G106:A153_C C 106 ? C 153 ? 11 10 1 C G 37 1_555 C C 52 1_555 0.443 0.024 -0.253 -2.857 -3.826 3.582 7 C_G137:C152_C C 137 ? C 152 ? 19 1 1 C A 40 1_555 C U 51 1_555 -0.434 -0.143 -0.439 -19.227 -0.914 7.149 8 C_A140:U151_C C 140 ? C 151 ? 20 1 1 C G 41 1_555 C C 50 1_555 -0.329 -0.121 -0.313 -7.898 2.587 3.396 9 C_G141:C150_C C 141 ? C 150 ? 19 1 1 C C 42 1_555 C G 49 1_555 0.578 -0.392 -0.361 4.661 1.289 -3.775 10 C_C142:G149_C C 142 ? C 149 ? 19 1 1 C G 43 1_555 C A 48 1_555 6.643 -4.073 -0.475 -5.169 7.505 -4.481 11 C_G143:A148_C C 143 ? C 148 ? 11 10 1 C A 36 1_555 C U 32 1_555 0.231 1.135 0.038 10.424 -7.410 174.500 12 C_A136:U132_C C 136 ? C 132 ? 21 2 1 C A 7 1_555 C U 31 1_555 0.510 -0.220 -0.156 6.915 -22.759 0.363 13 C_A107:U131_C C 107 ? C 131 ? 20 1 1 C U 8 1_555 C A 30 1_555 -0.241 -0.260 -0.281 -4.422 -10.441 1.783 14 C_U108:A130_C C 108 ? C 130 ? 20 1 1 C G 9 1_555 C C 29 1_555 -0.071 -0.122 0.357 0.112 3.163 -2.541 15 C_G109:C129_C C 109 ? C 129 ? 19 1 1 C U 10 1_555 C A 38 1_555 -1.091 3.815 0.447 -8.518 5.715 -69.657 16 C_U110:A138_C C 110 ? C 138 ? 23 3 1 C G 12 1_555 C C 26 1_555 -0.381 -0.075 0.418 8.631 -5.198 -10.180 17 C_G112:C126_C C 112 ? C 126 ? 19 1 1 C G 13 1_555 C C 25 1_555 -0.574 -0.052 0.403 3.214 -15.253 4.187 18 C_G113:C125_C C 113 ? C 125 ? 19 1 1 C C 14 1_555 C G 24 1_555 0.129 -0.062 -0.031 -1.275 -19.118 5.368 19 C_C114:G124_C C 114 ? C 124 ? 19 1 1 C U 15 1_555 C A 23 1_555 5.148 -0.961 0.061 -12.668 -9.566 -2.534 20 C_U115:A123_C C 115 ? C 123 ? ? ? 1 D GTP 1 1_555 D U 58 1_555 -2.404 -0.727 0.334 -2.723 -7.871 -3.363 21 D_GTP301:U358_D D 301 ? D 358 ? 28 1 1 D C 2 1_555 D G 57 1_555 0.658 -0.423 0.086 2.328 -16.912 -1.358 22 D_C302:G357_D D 302 ? D 357 ? 19 1 1 D C 3 1_555 D G 56 1_555 -0.068 -0.155 -0.054 -4.621 -11.515 -1.394 23 D_C303:G356_D D 303 ? D 356 ? 19 1 1 D A 4 1_555 D U 55 1_555 0.115 0.077 0.225 -2.424 -4.175 6.201 24 D_A304:U355_D D 304 ? D 355 ? 20 1 1 D G 5 1_555 D C 54 1_555 -0.303 -0.063 0.098 0.513 -7.318 1.416 25 D_G305:C354_D D 305 ? D 354 ? 19 1 1 D G 6 1_555 D A 53 1_555 6.917 -4.190 0.015 -15.121 -8.872 -4.142 26 D_G306:A353_D D 306 ? D 353 ? 11 10 1 D G 37 1_555 D C 52 1_555 0.084 -0.056 -0.326 -3.986 -4.681 1.929 27 D_G337:C352_D D 337 ? D 352 ? 19 1 1 D A 40 1_555 D U 51 1_555 -0.414 -0.309 -0.306 -11.608 -2.723 5.131 28 D_A340:U351_D D 340 ? D 351 ? 20 1 1 D G 41 1_555 D C 50 1_555 0.071 -0.197 -0.504 -1.938 8.903 -0.164 29 D_G341:C350_D D 341 ? D 350 ? 19 1 1 D C 42 1_555 D G 49 1_555 0.469 -0.189 -0.570 7.777 2.290 -0.382 30 D_C342:G349_D D 342 ? D 349 ? 19 1 1 D G 43 1_555 D A 48 1_555 6.862 -4.023 -0.088 -6.194 3.361 -7.208 31 D_G343:A348_D D 343 ? D 348 ? 11 10 1 D A 36 1_555 D U 32 1_555 0.134 1.453 -0.206 10.295 -4.364 175.896 32 D_A336:U332_D D 336 ? D 332 ? 21 2 1 D A 7 1_555 D U 31 1_555 0.179 -0.110 0.242 8.860 -17.530 -0.199 33 D_A307:U331_D D 307 ? D 331 ? 20 1 1 D U 8 1_555 D A 30 1_555 0.265 -0.231 0.018 -10.589 -13.147 -4.158 34 D_U308:A330_D D 308 ? D 330 ? 20 1 1 D G 9 1_555 D C 29 1_555 0.127 -0.051 0.216 -2.043 -6.095 -0.188 35 D_G309:C329_D D 309 ? D 329 ? 19 1 1 D U 10 1_555 D A 38 1_555 -0.755 3.841 0.848 -8.468 9.232 -66.401 36 D_U310:A338_D D 310 ? D 338 ? 23 3 1 D G 12 1_555 D C 26 1_555 -0.011 -0.101 0.642 10.330 -1.456 -9.417 37 D_G312:C326_D D 312 ? D 326 ? 19 1 1 D G 13 1_555 D C 25 1_555 -0.039 -0.121 -0.010 0.405 -24.136 4.083 38 D_G313:C325_D D 313 ? D 325 ? 19 1 1 D C 14 1_555 D G 24 1_555 0.465 -0.143 0.114 -1.497 -26.426 6.579 39 D_C314:G324_D D 314 ? D 324 ? 19 1 1 D U 15 1_555 D A 23 1_555 5.554 -1.163 0.114 -10.167 -9.525 2.556 40 D_U315:A323_D D 315 ? D 323 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 C GTP 1 1_555 C U 58 1_555 C C 2 1_555 C G 57 1_555 -0.076 -1.311 3.024 -2.637 3.241 42.200 -2.114 -0.140 2.919 4.489 3.651 42.397 1 CC_GTP101C102:G157U158_CC C 101 ? C 158 ? C 102 ? C 157 ? 1 C C 2 1_555 C G 57 1_555 C C 3 1_555 C G 56 1_555 -0.585 -1.817 3.051 4.312 8.880 31.826 -4.431 1.633 2.375 15.727 -7.637 33.284 2 CC_C102C103:G156G157_CC C 102 ? C 157 ? C 103 ? C 156 ? 1 C C 3 1_555 C G 56 1_555 C A 4 1_555 C U 55 1_555 0.733 -1.809 3.295 -2.772 4.892 27.166 -4.894 -2.165 2.844 10.276 5.822 27.731 3 CC_C103A104:U155G156_CC C 103 ? C 156 ? C 104 ? C 155 ? 1 C A 4 1_555 C U 55 1_555 C G 5 1_555 C C 54 1_555 0.659 -1.957 3.484 5.044 13.822 27.170 -6.232 -0.310 2.323 27.051 -9.872 30.832 4 CC_A104G105:C154U155_CC C 104 ? C 155 ? C 105 ? C 154 ? 1 C G 5 1_555 C C 54 1_555 C G 6 1_555 C A 53 1_555 -0.418 -0.809 3.706 4.057 11.676 68.976 -1.170 0.526 3.522 10.227 -3.554 69.940 5 CC_G105G106:A153C154_CC C 105 ? C 154 ? C 106 ? C 153 ? 1 C G 6 1_555 C A 53 1_555 C G 37 1_555 C C 52 1_555 -3.092 1.373 3.234 10.346 1.567 42.954 1.696 4.978 2.507 2.102 -13.883 44.152 6 CC_G106G137:C152A153_CC C 106 ? C 153 ? C 137 ? C 152 ? 1 C G 37 1_555 C C 52 1_555 C A 40 1_555 C U 51 1_555 -1.981 -2.639 3.802 2.434 3.629 43.993 -3.886 2.887 3.476 4.830 -3.239 44.198 7 CC_G137A140:U151C152_CC C 137 ? C 152 ? C 140 ? C 151 ? 1 C A 40 1_555 C U 51 1_555 C G 41 1_555 C C 50 1_555 -0.753 -2.480 3.144 0.689 -0.291 23.679 -5.948 2.055 3.151 -0.710 -1.678 23.690 8 CC_A140G141:C150U151_CC C 140 ? C 151 ? C 141 ? C 150 ? 1 C G 41 1_555 C C 50 1_555 C C 42 1_555 C G 49 1_555 -0.322 -2.096 3.046 1.129 0.282 33.731 -3.653 0.724 3.017 0.486 -1.945 33.750 9 CC_G141C142:G149C150_CC C 141 ? C 150 ? C 142 ? C 149 ? 1 C C 42 1_555 C G 49 1_555 C G 43 1_555 C A 48 1_555 0.250 -1.731 3.676 2.895 1.847 54.862 -1.998 -0.079 3.629 2.002 -3.139 54.961 10 CC_C142G143:A148G149_CC C 142 ? C 149 ? C 143 ? C 148 ? 1 C A 36 1_555 C U 32 1_555 C A 7 1_555 C U 31 1_555 -2.663 -2.479 1.081 83.983 -149.791 138.090 -1.047 1.440 1.317 -75.133 -42.125 177.044 11 CC_A136A107:U131U132_CC C 136 ? C 132 ? C 107 ? C 131 ? 1 C A 7 1_555 C U 31 1_555 C U 8 1_555 C A 30 1_555 -0.411 -1.918 3.362 -1.993 7.568 35.164 -4.150 0.389 2.918 12.338 3.250 35.997 12 CC_A107U108:A130U131_CC C 107 ? C 131 ? C 108 ? C 130 ? 1 C U 8 1_555 C A 30 1_555 C G 9 1_555 C C 29 1_555 -1.099 -2.005 3.265 -2.637 7.160 28.621 -5.349 1.627 2.780 14.168 5.218 29.600 13 CC_U108G109:C129A130_CC C 108 ? C 130 ? C 109 ? C 129 ? 1 C G 9 1_555 C C 29 1_555 C U 10 1_555 C A 38 1_555 -3.178 -0.164 -2.003 22.173 169.386 152.004 0.166 1.557 -2.083 84.827 -11.104 177.784 14 CC_G109U110:A138C129_CC C 109 ? C 129 ? C 110 ? C 138 ? 1 C G 12 1_555 C C 26 1_555 C G 13 1_555 C C 25 1_555 0.496 -1.617 3.211 -1.387 5.279 35.321 -3.354 -0.997 2.926 8.636 2.269 35.727 15 CC_G112G113:C125C126_CC C 112 ? C 126 ? C 113 ? C 125 ? 1 C G 13 1_555 C C 25 1_555 C C 14 1_555 C G 24 1_555 0.832 -2.020 3.322 7.036 2.074 34.875 -3.612 -0.313 3.301 3.414 -11.581 35.614 16 CC_G113C114:G124C125_CC C 113 ? C 125 ? C 114 ? C 124 ? 1 C C 14 1_555 C G 24 1_555 C U 15 1_555 C A 23 1_555 0.290 -0.859 3.575 5.188 5.926 51.220 -1.416 0.047 3.475 6.808 -5.961 51.782 17 CC_C114U115:A123G124_CC C 114 ? C 124 ? C 115 ? C 123 ? 1 D GTP 1 1_555 D U 58 1_555 D C 2 1_555 D G 57 1_555 -0.228 -1.397 3.160 0.640 5.008 46.325 -2.162 0.339 2.998 6.344 -0.811 46.585 18 DD_GTP301C302:G357U358_DD D 301 ? D 358 ? D 302 ? D 357 ? 1 D C 2 1_555 D G 57 1_555 D C 3 1_555 D G 56 1_555 -0.477 -1.931 3.236 -0.706 11.967 28.932 -5.575 0.768 2.287 22.758 1.343 31.269 19 DD_C302C303:G356G357_DD D 302 ? D 357 ? D 303 ? D 356 ? 1 D C 3 1_555 D G 56 1_555 D A 4 1_555 D U 55 1_555 0.688 -1.828 3.143 -0.780 7.492 29.675 -4.785 -1.442 2.596 14.340 1.493 30.595 20 DD_C303A304:U355G356_DD D 303 ? D 356 ? D 304 ? D 355 ? 1 D A 4 1_555 D U 55 1_555 D G 5 1_555 D C 54 1_555 0.506 -1.977 3.221 1.199 7.954 25.644 -6.098 -0.811 2.524 17.384 -2.621 26.856 21 DD_A304G305:C354U355_DD D 304 ? D 355 ? D 305 ? D 354 ? 1 D G 5 1_555 D C 54 1_555 D G 6 1_555 D A 53 1_555 -0.266 -0.930 3.914 7.427 13.304 69.573 -1.340 0.530 3.668 11.520 -6.431 71.016 22 DD_G305G306:A353C354_DD D 305 ? D 354 ? D 306 ? D 353 ? 1 D G 6 1_555 D A 53 1_555 D G 37 1_555 D C 52 1_555 -3.428 1.198 3.139 10.347 1.190 42.067 1.526 5.502 2.304 1.628 -14.155 43.280 23 DD_G306G337:C352A353_DD D 306 ? D 353 ? D 337 ? D 352 ? 1 D G 37 1_555 D C 52 1_555 D A 40 1_555 D U 51 1_555 -1.835 -2.712 3.551 2.052 3.316 45.480 -3.799 2.553 3.275 4.280 -2.649 45.639 24 DD_G337A340:U351C352_DD D 337 ? D 352 ? D 340 ? D 351 ? 1 D A 40 1_555 D U 51 1_555 D G 41 1_555 D C 50 1_555 -0.775 -2.603 3.070 1.562 2.778 23.995 -6.990 2.288 2.700 6.644 -3.737 24.203 25 DD_A340G341:C350U351_DD D 340 ? D 351 ? D 341 ? D 350 ? 1 D G 41 1_555 D C 50 1_555 D C 42 1_555 D G 49 1_555 0.075 -2.246 3.151 0.199 -1.562 32.590 -3.732 -0.099 3.253 -2.782 -0.354 32.627 26 DD_G341C342:G349C350_DD D 341 ? D 350 ? D 342 ? D 349 ? 1 D C 42 1_555 D G 49 1_555 D G 43 1_555 D A 48 1_555 -0.171 -1.817 3.803 4.014 8.033 56.164 -2.412 0.431 3.516 8.472 -4.233 56.820 27 DD_C342G343:A348G349_DD D 342 ? D 349 ? D 343 ? D 348 ? 1 D A 36 1_555 D U 32 1_555 D A 7 1_555 D U 31 1_555 -2.688 -1.772 1.479 83.310 -150.942 171.258 -0.837 1.371 1.493 -75.481 -41.661 179.422 28 DD_A336A307:U331U332_DD D 336 ? D 332 ? D 307 ? D 331 ? 1 D A 7 1_555 D U 31 1_555 D U 8 1_555 D A 30 1_555 -0.762 -2.348 3.435 -1.866 10.887 40.431 -4.388 0.878 2.770 15.408 2.640 41.852 29 DD_A307U308:A330U331_DD D 307 ? D 331 ? D 308 ? D 330 ? 1 D U 8 1_555 D A 30 1_555 D G 9 1_555 D C 29 1_555 -1.250 -1.786 3.114 0.430 5.283 25.501 -5.259 2.881 2.674 11.805 -0.962 26.037 30 DD_U308G309:C329A330_DD D 308 ? D 330 ? D 309 ? D 329 ? 1 D G 9 1_555 D C 29 1_555 D U 10 1_555 D A 38 1_555 2.854 -1.179 -2.027 -26.645 -168.013 -155.977 0.374 1.461 -2.131 84.113 -13.340 -177.945 31 DD_G309U310:A338C329_DD D 309 ? D 329 ? D 310 ? D 338 ? 1 D G 12 1_555 D C 26 1_555 D G 13 1_555 D C 25 1_555 0.276 -1.680 3.565 2.695 7.608 34.667 -3.904 -0.043 3.150 12.558 -4.448 35.566 32 DD_G312G313:C325C326_DD D 312 ? D 326 ? D 313 ? D 325 ? 1 D G 13 1_555 D C 25 1_555 D C 14 1_555 D G 24 1_555 0.859 -1.776 3.187 2.257 2.436 35.488 -3.243 -1.088 3.109 3.986 -3.693 35.638 33 DD_G313C314:G324C325_DD D 313 ? D 325 ? D 314 ? D 324 ? 1 D C 14 1_555 D G 24 1_555 D U 15 1_555 D A 23 1_555 0.017 -0.961 3.525 6.621 8.245 51.041 -1.677 0.448 3.321 9.452 -7.591 52.053 34 DD_C314U315:A323G324_DD D 314 ? D 324 ? D 315 ? D 323 ? # _atom_sites.entry_id 1HC8 _atom_sites.fract_transf_matrix[1][1] 0.006637 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.006637 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015664 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C K MG N O OS P S # loop_