data_1HDD # _entry.id 1HDD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1HDD pdb_00001hdd 10.2210/pdb1hdd/pdb RCSB PDT004 ? ? WWPDB D_1000173793 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1992-01-15 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-02-15 5 'Structure model' 1 4 2022-12-21 6 'Structure model' 1 5 2024-05-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Source and taxonomy' 4 4 'Structure model' 'Structure summary' 5 5 'Structure model' 'Database references' 6 6 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' database_2 2 5 'Structure model' struct_ref_seq_dif 3 6 'Structure model' chem_comp_atom 4 6 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1HDD _pdbx_database_status.recvd_initial_deposition_date 1991-09-16 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site BNL _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kissinger, C.R.' 1 'Liu, B.' 2 'Martin-Blanco, E.' 3 'Kornberg, T.B.' 4 'Pabo, C.O.' 5 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary ;Crystal structure of an engrailed homeodomain-DNA complex at 2.8 A resolution: a framework for understanding homeodomain-DNA interactions. ; 'Cell(Cambridge,Mass.)' 63 579 590 1990 CELLB5 US 0092-8674 0998 ? 1977522 '10.1016/0092-8674(90)90453-L' 1 'Crystallization and Preliminary X-Ray Diffraction Studies of the Engrailed Homeodomain and of an Engrailed Homeodomain Complex' Biochem.Biophys.Res.Commun. 171 257 ? 1990 BBRCA9 US 0006-291X 0146 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kissinger, C.R.' 1 ? primary 'Liu, B.S.' 2 ? primary 'Martin-Blanco, E.' 3 ? primary 'Kornberg, T.B.' 4 ? primary 'Pabo, C.O.' 5 ? 1 'Liu, B.' 6 ? 1 'Kissinger, C.R.' 7 ? 1 'Pabo, C.O.' 8 ? 1 'Martin-Blanco, E.' 9 ? 1 'Kornberg, T.B.' 10 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*TP*TP*TP*TP*GP*CP*CP*AP*TP*GP*TP*AP*AP*TP*TP*AP*C P*CP*TP*AP*A)-3') ; 6387.157 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*AP*TP*TP*AP*GP*GP*TP*AP*AP*TP*TP*AP*CP*AP*TP*GP*G P*CP*AP*AP*A)-3') ; 6494.248 1 ? ? ? ? 3 polymer man 'PROTEIN (ENGRAILED HOMEODOMAIN)' 7469.551 2 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no ;(DT)(DT)(DT)(DT)(DG)(DC)(DC)(DA)(DT)(DG)(DT)(DA)(DA)(DT)(DT)(DA)(DC)(DC)(DT)(DA) (DA) ; TTTTGCCATGTAATTACCTAA A ? 2 polydeoxyribonucleotide no no ;(DA)(DT)(DT)(DA)(DG)(DG)(DT)(DA)(DA)(DT)(DT)(DA)(DC)(DA)(DT)(DG)(DG)(DC)(DA)(DA) (DA) ; ATTAGGTAATTACATGGCAAA B ? 3 'polypeptide(L)' no no MDEKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFQNKRAKIKKS MDEKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFQNKRAKIKKS C,D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DT n 1 3 DT n 1 4 DT n 1 5 DG n 1 6 DC n 1 7 DC n 1 8 DA n 1 9 DT n 1 10 DG n 1 11 DT n 1 12 DA n 1 13 DA n 1 14 DT n 1 15 DT n 1 16 DA n 1 17 DC n 1 18 DC n 1 19 DT n 1 20 DA n 1 21 DA n 2 1 DA n 2 2 DT n 2 3 DT n 2 4 DA n 2 5 DG n 2 6 DG n 2 7 DT n 2 8 DA n 2 9 DA n 2 10 DT n 2 11 DT n 2 12 DA n 2 13 DC n 2 14 DA n 2 15 DT n 2 16 DG n 2 17 DG n 2 18 DC n 2 19 DA n 2 20 DA n 2 21 DA n 3 1 MET n 3 2 ASP n 3 3 GLU n 3 4 LYS n 3 5 ARG n 3 6 PRO n 3 7 ARG n 3 8 THR n 3 9 ALA n 3 10 PHE n 3 11 SER n 3 12 SER n 3 13 GLU n 3 14 GLN n 3 15 LEU n 3 16 ALA n 3 17 ARG n 3 18 LEU n 3 19 LYS n 3 20 ARG n 3 21 GLU n 3 22 PHE n 3 23 ASN n 3 24 GLU n 3 25 ASN n 3 26 ARG n 3 27 TYR n 3 28 LEU n 3 29 THR n 3 30 GLU n 3 31 ARG n 3 32 ARG n 3 33 ARG n 3 34 GLN n 3 35 GLN n 3 36 LEU n 3 37 SER n 3 38 SER n 3 39 GLU n 3 40 LEU n 3 41 GLY n 3 42 LEU n 3 43 ASN n 3 44 GLU n 3 45 ALA n 3 46 GLN n 3 47 ILE n 3 48 LYS n 3 49 ILE n 3 50 TRP n 3 51 PHE n 3 52 GLN n 3 53 ASN n 3 54 LYS n 3 55 ARG n 3 56 ALA n 3 57 LYS n 3 58 ILE n 3 59 LYS n 3 60 LYS n 3 61 SER n # _entity_src_gen.entity_id 3 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'fruit fly' _entity_src_gen.gene_src_genus Drosophila _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Drosophila melanogaster' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 7227 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample ? ? 'synthetic construct' ? 32630 ? 2 1 sample ? ? 'synthetic construct' ? 32630 ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 1 1 DT T A . n A 1 2 DT 2 2 2 DT T A . n A 1 3 DT 3 3 3 DT T A . n A 1 4 DT 4 4 4 DT T A . n A 1 5 DG 5 5 5 DG G A . n A 1 6 DC 6 6 6 DC C A . n A 1 7 DC 7 7 7 DC C A . n A 1 8 DA 8 8 8 DA A A . n A 1 9 DT 9 9 9 DT T A . n A 1 10 DG 10 10 10 DG G A . n A 1 11 DT 11 11 11 DT T A . n A 1 12 DA 12 12 12 DA A A . n A 1 13 DA 13 13 13 DA A A . n A 1 14 DT 14 14 14 DT T A . n A 1 15 DT 15 15 15 DT T A . n A 1 16 DA 16 16 16 DA A A . n A 1 17 DC 17 17 17 DC C A . n A 1 18 DC 18 18 18 DC C A . n A 1 19 DT 19 19 19 DT T A . n A 1 20 DA 20 20 20 DA A A . n A 1 21 DA 21 21 21 DA A A . n B 2 1 DA 1 22 22 DA A B . n B 2 2 DT 2 23 23 DT T B . n B 2 3 DT 3 24 24 DT T B . n B 2 4 DA 4 25 25 DA A B . n B 2 5 DG 5 26 26 DG G B . n B 2 6 DG 6 27 27 DG G B . n B 2 7 DT 7 28 28 DT T B . n B 2 8 DA 8 29 29 DA A B . n B 2 9 DA 9 30 30 DA A B . n B 2 10 DT 10 31 31 DT T B . n B 2 11 DT 11 32 32 DT T B . n B 2 12 DA 12 33 33 DA A B . n B 2 13 DC 13 34 34 DC C B . n B 2 14 DA 14 35 35 DA A B . n B 2 15 DT 15 36 36 DT T B . n B 2 16 DG 16 37 37 DG G B . n B 2 17 DG 17 38 38 DG G B . n B 2 18 DC 18 39 39 DC C B . n B 2 19 DA 19 40 40 DA A B . n B 2 20 DA 20 41 41 DA A B . n B 2 21 DA 21 42 42 DA A B . n C 3 1 MET 1 -1 ? ? ? C . n C 3 2 ASP 2 0 ? ? ? C . n C 3 3 GLU 3 1 ? ? ? C . n C 3 4 LYS 4 2 ? ? ? C . n C 3 5 ARG 5 3 3 ARG ARG C . n C 3 6 PRO 6 4 4 PRO PRO C . n C 3 7 ARG 7 5 5 ARG ARG C . n C 3 8 THR 8 6 6 THR THR C . n C 3 9 ALA 9 7 7 ALA ALA C . n C 3 10 PHE 10 8 8 PHE PHE C . n C 3 11 SER 11 9 9 SER SER C . n C 3 12 SER 12 10 10 SER SER C . n C 3 13 GLU 13 11 11 GLU GLU C . n C 3 14 GLN 14 12 12 GLN GLN C . n C 3 15 LEU 15 13 13 LEU LEU C . n C 3 16 ALA 16 14 14 ALA ALA C . n C 3 17 ARG 17 15 15 ARG ARG C . n C 3 18 LEU 18 16 16 LEU LEU C . n C 3 19 LYS 19 17 17 LYS LYS C . n C 3 20 ARG 20 18 18 ARG ARG C . n C 3 21 GLU 21 19 19 GLU GLU C . n C 3 22 PHE 22 20 20 PHE PHE C . n C 3 23 ASN 23 21 21 ASN ASN C . n C 3 24 GLU 24 22 22 GLU GLU C . n C 3 25 ASN 25 23 23 ASN ASN C . n C 3 26 ARG 26 24 24 ARG ARG C . n C 3 27 TYR 27 25 25 TYR TYR C . n C 3 28 LEU 28 26 26 LEU LEU C . n C 3 29 THR 29 27 27 THR THR C . n C 3 30 GLU 30 28 28 GLU GLU C . n C 3 31 ARG 31 29 29 ARG ARG C . n C 3 32 ARG 32 30 30 ARG ARG C . n C 3 33 ARG 33 31 31 ARG ARG C . n C 3 34 GLN 34 32 32 GLN GLN C . n C 3 35 GLN 35 33 33 GLN GLN C . n C 3 36 LEU 36 34 34 LEU LEU C . n C 3 37 SER 37 35 35 SER SER C . n C 3 38 SER 38 36 36 SER SER C . n C 3 39 GLU 39 37 37 GLU GLU C . n C 3 40 LEU 40 38 38 LEU LEU C . n C 3 41 GLY 41 39 39 GLY GLY C . n C 3 42 LEU 42 40 40 LEU LEU C . n C 3 43 ASN 43 41 41 ASN ASN C . n C 3 44 GLU 44 42 42 GLU GLU C . n C 3 45 ALA 45 43 43 ALA ALA C . n C 3 46 GLN 46 44 44 GLN GLN C . n C 3 47 ILE 47 45 45 ILE ILE C . n C 3 48 LYS 48 46 46 LYS LYS C . n C 3 49 ILE 49 47 47 ILE ILE C . n C 3 50 TRP 50 48 48 TRP TRP C . n C 3 51 PHE 51 49 49 PHE PHE C . n C 3 52 GLN 52 50 50 GLN GLN C . n C 3 53 ASN 53 51 51 ASN ASN C . n C 3 54 LYS 54 52 52 LYS LYS C . n C 3 55 ARG 55 53 53 ARG ARG C . n C 3 56 ALA 56 54 54 ALA ALA C . n C 3 57 LYS 57 55 55 LYS LYS C . n C 3 58 ILE 58 56 56 ILE ILE C . n C 3 59 LYS 59 57 57 LYS LYS C . n C 3 60 LYS 60 58 58 LYS LYS C . n C 3 61 SER 61 59 59 SER SER C . n D 3 1 MET 1 -1 ? ? ? D . n D 3 2 ASP 2 0 ? ? ? D . n D 3 3 GLU 3 1 ? ? ? D . n D 3 4 LYS 4 2 ? ? ? D . n D 3 5 ARG 5 3 3 ARG ARG D . n D 3 6 PRO 6 4 4 PRO PRO D . n D 3 7 ARG 7 5 5 ARG ARG D . n D 3 8 THR 8 6 6 THR THR D . n D 3 9 ALA 9 7 7 ALA ALA D . n D 3 10 PHE 10 8 8 PHE PHE D . n D 3 11 SER 11 9 9 SER SER D . n D 3 12 SER 12 10 10 SER SER D . n D 3 13 GLU 13 11 11 GLU GLU D . n D 3 14 GLN 14 12 12 GLN GLN D . n D 3 15 LEU 15 13 13 LEU LEU D . n D 3 16 ALA 16 14 14 ALA ALA D . n D 3 17 ARG 17 15 15 ARG ARG D . n D 3 18 LEU 18 16 16 LEU LEU D . n D 3 19 LYS 19 17 17 LYS LYS D . n D 3 20 ARG 20 18 18 ARG ARG D . n D 3 21 GLU 21 19 19 GLU GLU D . n D 3 22 PHE 22 20 20 PHE PHE D . n D 3 23 ASN 23 21 21 ASN ASN D . n D 3 24 GLU 24 22 22 GLU GLU D . n D 3 25 ASN 25 23 23 ASN ASN D . n D 3 26 ARG 26 24 24 ARG ARG D . n D 3 27 TYR 27 25 25 TYR TYR D . n D 3 28 LEU 28 26 26 LEU LEU D . n D 3 29 THR 29 27 27 THR THR D . n D 3 30 GLU 30 28 28 GLU GLU D . n D 3 31 ARG 31 29 29 ARG ARG D . n D 3 32 ARG 32 30 30 ARG ARG D . n D 3 33 ARG 33 31 31 ARG ARG D . n D 3 34 GLN 34 32 32 GLN GLN D . n D 3 35 GLN 35 33 33 GLN GLN D . n D 3 36 LEU 36 34 34 LEU LEU D . n D 3 37 SER 37 35 35 SER SER D . n D 3 38 SER 38 36 36 SER SER D . n D 3 39 GLU 39 37 37 GLU GLU D . n D 3 40 LEU 40 38 38 LEU LEU D . n D 3 41 GLY 41 39 39 GLY GLY D . n D 3 42 LEU 42 40 40 LEU LEU D . n D 3 43 ASN 43 41 41 ASN ASN D . n D 3 44 GLU 44 42 42 GLU GLU D . n D 3 45 ALA 45 43 43 ALA ALA D . n D 3 46 GLN 46 44 44 GLN GLN D . n D 3 47 ILE 47 45 45 ILE ILE D . n D 3 48 LYS 48 46 46 LYS LYS D . n D 3 49 ILE 49 47 47 ILE ILE D . n D 3 50 TRP 50 48 48 TRP TRP D . n D 3 51 PHE 51 49 49 PHE PHE D . n D 3 52 GLN 52 50 50 GLN GLN D . n D 3 53 ASN 53 51 51 ASN ASN D . n D 3 54 LYS 54 52 52 LYS LYS D . n D 3 55 ARG 55 53 53 ARG ARG D . n D 3 56 ALA 56 54 54 ALA ALA D . n D 3 57 LYS 57 55 55 LYS LYS D . n D 3 58 ILE 58 56 56 ILE ILE D . n D 3 59 LYS 59 57 57 LYS LYS D . n D 3 60 LYS 60 58 58 LYS LYS D . n D 3 61 SER 61 59 59 SER SER D . n # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 C ARG 18 ? CG ? C ARG 20 CG 2 1 Y 1 C ARG 18 ? CD ? C ARG 20 CD 3 1 Y 1 C ARG 18 ? NE ? C ARG 20 NE 4 1 Y 1 C ARG 18 ? CZ ? C ARG 20 CZ 5 1 Y 1 C ARG 18 ? NH1 ? C ARG 20 NH1 6 1 Y 1 C ARG 18 ? NH2 ? C ARG 20 NH2 7 1 Y 1 D ARG 3 ? CG ? D ARG 5 CG 8 1 Y 1 D ARG 3 ? CD ? D ARG 5 CD 9 1 Y 1 D ARG 3 ? NE ? D ARG 5 NE 10 1 Y 1 D ARG 3 ? CZ ? D ARG 5 CZ 11 1 Y 1 D ARG 3 ? NH1 ? D ARG 5 NH1 12 1 Y 1 D ARG 3 ? NH2 ? D ARG 5 NH2 13 1 Y 1 D ARG 18 ? CG ? D ARG 20 CG 14 1 Y 1 D ARG 18 ? CD ? D ARG 20 CD 15 1 Y 1 D ARG 18 ? NE ? D ARG 20 NE 16 1 Y 1 D ARG 18 ? CZ ? D ARG 20 CZ 17 1 Y 1 D ARG 18 ? NH1 ? D ARG 20 NH1 18 1 Y 1 D ARG 18 ? NH2 ? D ARG 20 NH2 # _software.name X-PLOR _software.classification refinement _software.version . _software.citation_id ? _software.pdbx_ordinal 1 # _cell.entry_id 1HDD _cell.length_a 131.200 _cell.length_b 45.500 _cell.length_c 72.900 _cell.angle_alpha 90.00 _cell.angle_beta 119.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1HDD _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # _exptl.entry_id 1HDD _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 63.48 _exptl_crystal.density_Matthews 3.37 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.70 _exptl_crystal_grow.pdbx_details 'pH 6.70, VAPOR DIFFUSION' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER ? ? ? 1 2 1 BIS-TRIS-PROPANE_HCL ? ? ? 1 3 1 NH4OH ? ? ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'AREA DETECTOR' _diffrn_detector.type XENTRONICS _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _reflns.entry_id 1HDD _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low ? _reflns.d_resolution_high 2.800 _reflns.number_obs 9072 _reflns.number_all ? _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _refine.entry_id 1HDD _refine.ls_number_reflns_obs 9072 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 10.001 _refine.ls_d_res_high 2.800 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.2250000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2250000 _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 962 _refine_hist.pdbx_number_atoms_nucleic_acid 855 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1817 _refine_hist.d_res_high 2.800 _refine_hist.d_res_low 10.001 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.019 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 2.59 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _database_PDB_matrix.entry_id 1HDD _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1HDD _struct.title ;CRYSTAL STRUCTURE OF AN ENGRAILED HOMEODOMAIN-DNA COMPLEX AT 2.8 ANGSTROMS RESOLUTION: A FRAMEWORK FOR UNDERSTANDING HOMEODOMAIN-DNA INTERACTIONS ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1HDD _struct_keywords.pdbx_keywords TRANSCRIPTION/DNA _struct_keywords.text 'PROTEIN-DNA COMPLEX, DOUBLE HELIX, TRANSCRIPTION-DNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? # loop_ _struct_ref.id _struct_ref.db_code _struct_ref.db_name _struct_ref.entity_id _struct_ref.pdbx_db_accession _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 HMEN_DROME UNP 3 P02836 ? ? ? 2 1HDD PDB 1 1HDD ? ? ? 3 1HDD PDB 2 1HDD ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1HDD C 2 ? 61 ? P02836 453 ? 512 ? 0 59 2 1 1HDD D 2 ? 61 ? P02836 453 ? 512 ? 0 59 3 2 1HDD A 1 ? 21 ? 1HDD 1 ? 21 ? 1 21 4 3 1HDD B 1 ? 21 ? 1HDD 22 ? 42 ? 22 42 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1HDD MET C 1 ? UNP P02836 ? ? 'initiating methionine' -1 1 2 1HDD MET D 1 ? UNP P02836 ? ? 'initiating methionine' -1 2 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 C1 SER C 12 ? GLU C 24 ? SER C 10 GLU C 22 1 ? 13 HELX_P HELX_P2 C2 GLU C 30 ? LEU C 40 ? GLU C 28 LEU C 38 1 ? 11 HELX_P HELX_P3 C3 GLU C 44 ? LYS C 60 ? GLU C 42 LYS C 58 1 ? 17 HELX_P HELX_P4 D1 SER D 12 ? GLU D 24 ? SER D 10 GLU D 22 1 ? 13 HELX_P HELX_P5 D2 GLU D 30 ? LEU D 40 ? GLU D 28 LEU D 38 1 ? 11 HELX_P HELX_P6 D3 GLU D 44 ? LYS D 60 ? GLU D 42 LYS D 58 1 ? 17 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DT 2 N3 ? ? ? 1_555 B DA 21 N1 ? ? A DT 2 B DA 42 1_555 ? ? ? ? ? ? 'DT-DA PAIR' ? ? ? hydrog2 hydrog ? ? A DT 3 N3 ? ? ? 1_555 B DA 20 N1 ? ? A DT 3 B DA 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DT 3 O4 ? ? ? 1_555 B DA 20 N6 ? ? A DT 3 B DA 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DT 4 N3 ? ? ? 1_555 B DA 19 N1 ? ? A DT 4 B DA 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DT 4 O4 ? ? ? 1_555 B DA 19 N6 ? ? A DT 4 B DA 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 5 N1 ? ? ? 1_555 B DC 18 N3 ? ? A DG 5 B DC 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 5 N2 ? ? ? 1_555 B DC 18 O2 ? ? A DG 5 B DC 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 5 O6 ? ? ? 1_555 B DC 18 N4 ? ? A DG 5 B DC 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 6 N3 ? ? ? 1_555 B DG 17 N1 ? ? A DC 6 B DG 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 6 N4 ? ? ? 1_555 B DG 17 O6 ? ? A DC 6 B DG 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 6 O2 ? ? ? 1_555 B DG 17 N2 ? ? A DC 6 B DG 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 7 N3 ? ? ? 1_555 B DG 16 N1 ? ? A DC 7 B DG 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 7 N4 ? ? ? 1_555 B DG 16 O6 ? ? A DC 7 B DG 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 7 O2 ? ? ? 1_555 B DG 16 N2 ? ? A DC 7 B DG 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DA 8 N1 ? ? ? 1_555 B DT 15 N3 ? ? A DA 8 B DT 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 8 N6 ? ? ? 1_555 B DT 15 O4 ? ? A DA 8 B DT 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DT 9 N3 ? ? ? 1_555 B DA 14 N1 ? ? A DT 9 B DA 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DT 9 O4 ? ? ? 1_555 B DA 14 N6 ? ? A DT 9 B DA 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 13 N3 ? ? A DG 10 B DC 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 13 O2 ? ? A DG 10 B DC 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 13 N4 ? ? A DG 10 B DC 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DT 11 N3 ? ? ? 1_555 B DA 12 N1 ? ? A DT 11 B DA 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DT 11 O4 ? ? ? 1_555 B DA 12 N6 ? ? A DT 11 B DA 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DA 12 N1 ? ? ? 1_555 B DT 11 N3 ? ? A DA 12 B DT 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DA 12 N6 ? ? ? 1_555 B DT 11 O4 ? ? A DA 12 B DT 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DA 13 N1 ? ? ? 1_555 B DT 10 N3 ? ? A DA 13 B DT 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DA 13 N6 ? ? ? 1_555 B DT 10 O4 ? ? A DA 13 B DT 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DT 14 N3 ? ? ? 1_555 B DA 9 N1 ? ? A DT 14 B DA 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DT 14 O4 ? ? ? 1_555 B DA 9 N6 ? ? A DT 14 B DA 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DT 15 N3 ? ? ? 1_555 B DA 8 N1 ? ? A DT 15 B DA 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DT 15 O4 ? ? ? 1_555 B DA 8 N6 ? ? A DT 15 B DA 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DA 16 N1 ? ? ? 1_555 B DT 7 N3 ? ? A DA 16 B DT 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A DA 16 N6 ? ? ? 1_555 B DT 7 O4 ? ? A DA 16 B DT 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A DC 17 N3 ? ? ? 1_555 B DG 6 N1 ? ? A DC 17 B DG 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A DC 17 N4 ? ? ? 1_555 B DG 6 O6 ? ? A DC 17 B DG 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A DC 17 O2 ? ? ? 1_555 B DG 6 N2 ? ? A DC 17 B DG 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A DC 18 N3 ? ? ? 1_555 B DG 5 N1 ? ? A DC 18 B DG 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A DC 18 N4 ? ? ? 1_555 B DG 5 O6 ? ? A DC 18 B DG 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A DC 18 O2 ? ? ? 1_555 B DG 5 N2 ? ? A DC 18 B DG 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A DT 19 N3 ? ? ? 1_555 B DA 4 N1 ? ? A DT 19 B DA 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A DT 19 O4 ? ? ? 1_555 B DA 4 N6 ? ? A DT 19 B DA 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A DA 20 N1 ? ? ? 1_555 B DT 3 N3 ? ? A DA 20 B DT 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A DA 20 N6 ? ? ? 1_555 B DT 3 O4 ? ? A DA 20 B DT 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A DA 21 N1 ? ? ? 1_555 B DT 2 N3 ? ? A DA 21 B DT 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A DA 21 N6 ? ? ? 1_555 B DT 2 O4 ? ? A DA 21 B DT 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" A DT 2 ? ? "C3'" A DT 2 ? ? 1.372 1.419 -0.047 0.006 N 2 1 N1 A DT 9 ? ? C2 A DT 9 ? ? 1.426 1.376 0.050 0.008 N 3 1 "O3'" A DG 10 ? ? "C3'" A DG 10 ? ? 1.374 1.419 -0.045 0.006 N 4 1 "O3'" A DA 12 ? ? "C3'" A DA 12 ? ? 1.380 1.419 -0.039 0.006 N 5 1 "O3'" A DC 18 ? ? "C3'" A DC 18 ? ? 1.347 1.419 -0.072 0.006 N 6 1 "O3'" A DT 19 ? ? "C3'" A DT 19 ? ? 1.347 1.419 -0.072 0.006 N 7 1 "O3'" B DT 28 ? ? "C3'" B DT 28 ? ? 1.325 1.419 -0.094 0.006 N 8 1 "O3'" B DA 29 ? ? "C3'" B DA 29 ? ? 1.365 1.419 -0.054 0.006 N 9 1 "O3'" B DA 30 ? ? "C3'" B DA 30 ? ? 1.379 1.419 -0.040 0.006 N 10 1 "C1'" B DT 31 ? ? N1 B DT 31 ? ? 1.380 1.468 -0.088 0.014 N 11 1 N1 B DT 31 ? ? C2 B DT 31 ? ? 1.320 1.376 -0.056 0.008 N 12 1 "O3'" B DA 35 ? ? "C3'" B DA 35 ? ? 1.519 1.435 0.084 0.013 N 13 1 "O3'" B DC 39 ? ? "C3'" B DC 39 ? ? 1.382 1.419 -0.037 0.006 N 14 1 CD C GLU 11 ? ? OE2 C GLU 11 ? ? 1.340 1.252 0.088 0.011 N 15 1 CD C GLU 19 ? ? OE2 C GLU 19 ? ? 1.321 1.252 0.069 0.011 N 16 1 CD C GLU 22 ? ? OE2 C GLU 22 ? ? 1.346 1.252 0.094 0.011 N 17 1 CD C GLU 37 ? ? OE2 C GLU 37 ? ? 1.320 1.252 0.068 0.011 N 18 1 CD C GLU 42 ? ? OE1 C GLU 42 ? ? 1.184 1.252 -0.068 0.011 N 19 1 CD D GLU 11 ? ? OE2 D GLU 11 ? ? 1.324 1.252 0.072 0.011 N 20 1 CD D GLU 22 ? ? OE2 D GLU 22 ? ? 1.330 1.252 0.078 0.011 N 21 1 CD D GLU 28 ? ? OE2 D GLU 28 ? ? 1.329 1.252 0.077 0.011 N 22 1 CD D GLU 37 ? ? OE2 D GLU 37 ? ? 1.336 1.252 0.084 0.011 N 23 1 CD D GLU 42 ? ? OE2 D GLU 42 ? ? 1.329 1.252 0.077 0.011 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O5'" A DT 2 ? ? "C5'" A DT 2 ? ? "C4'" A DT 2 ? ? 103.17 109.40 -6.23 0.80 N 2 1 "C3'" A DT 3 ? ? "C2'" A DT 3 ? ? "C1'" A DT 3 ? ? 93.83 102.40 -8.57 0.80 N 3 1 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 113.97 108.30 5.67 0.30 N 4 1 "C3'" A DT 3 ? ? "O3'" A DT 3 ? ? P A DT 4 ? ? 111.79 119.70 -7.91 1.20 Y 5 1 "C3'" A DT 4 ? ? "C2'" A DT 4 ? ? "C1'" A DT 4 ? ? 97.06 102.40 -5.34 0.80 N 6 1 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 115.81 108.30 7.51 0.30 N 7 1 "C1'" A DC 7 ? ? "O4'" A DC 7 ? ? "C4'" A DC 7 ? ? 101.53 110.10 -8.57 1.00 N 8 1 "O4'" A DC 7 ? ? "C1'" A DC 7 ? ? N1 A DC 7 ? ? 115.83 108.30 7.53 0.30 N 9 1 "C3'" A DC 7 ? ? "O3'" A DC 7 ? ? P A DA 8 ? ? 109.09 119.70 -10.61 1.20 Y 10 1 "C3'" A DA 8 ? ? "O3'" A DA 8 ? ? P A DT 9 ? ? 110.69 119.70 -9.01 1.20 Y 11 1 P A DT 9 ? ? "O5'" A DT 9 ? ? "C5'" A DT 9 ? ? 107.31 120.90 -13.59 1.60 N 12 1 "C1'" A DT 9 ? ? "O4'" A DT 9 ? ? "C4'" A DT 9 ? ? 103.19 110.10 -6.91 1.00 N 13 1 N1 A DT 9 ? ? C2 A DT 9 ? ? O2 A DT 9 ? ? 129.04 123.10 5.94 0.80 N 14 1 N3 A DT 9 ? ? C2 A DT 9 ? ? O2 A DT 9 ? ? 117.85 122.30 -4.45 0.60 N 15 1 C4 A DT 9 ? ? C5 A DT 9 ? ? C7 A DT 9 ? ? 123.02 119.00 4.02 0.60 N 16 1 C6 A DT 9 ? ? C5 A DT 9 ? ? C7 A DT 9 ? ? 118.77 122.90 -4.13 0.60 N 17 1 "O5'" A DG 10 ? ? "C5'" A DG 10 ? ? "C4'" A DG 10 ? ? 104.23 109.40 -5.17 0.80 N 18 1 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? "C2'" A DG 10 ? ? 110.47 106.80 3.67 0.50 N 19 1 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 110.61 108.30 2.31 0.30 N 20 1 "C3'" A DG 10 ? ? "O3'" A DG 10 ? ? P A DT 11 ? ? 130.36 119.70 10.66 1.20 Y 21 1 "C3'" A DT 11 ? ? "C2'" A DT 11 ? ? "C1'" A DT 11 ? ? 96.82 102.40 -5.58 0.80 N 22 1 "O4'" A DT 11 ? ? "C1'" A DT 11 ? ? "C2'" A DT 11 ? ? 99.22 105.90 -6.68 0.80 N 23 1 C4 A DT 11 ? ? C5 A DT 11 ? ? C7 A DT 11 ? ? 122.93 119.00 3.93 0.60 N 24 1 C6 A DT 11 ? ? C5 A DT 11 ? ? C7 A DT 11 ? ? 119.29 122.90 -3.61 0.60 N 25 1 "O4'" A DA 12 ? ? "C1'" A DA 12 ? ? N9 A DA 12 ? ? 110.52 108.30 2.22 0.30 N 26 1 "C4'" A DA 13 ? ? "C3'" A DA 13 ? ? "C2'" A DA 13 ? ? 96.31 102.20 -5.89 0.70 N 27 1 "C3'" A DA 13 ? ? "C2'" A DA 13 ? ? "C1'" A DA 13 ? ? 97.46 102.40 -4.94 0.80 N 28 1 "O4'" A DA 13 ? ? "C1'" A DA 13 ? ? N9 A DA 13 ? ? 117.84 108.30 9.54 0.30 N 29 1 "O4'" A DT 14 ? ? "C1'" A DT 14 ? ? "C2'" A DT 14 ? ? 110.48 106.80 3.68 0.50 N 30 1 "O4'" A DT 14 ? ? "C1'" A DT 14 ? ? N1 A DT 14 ? ? 113.62 108.30 5.32 0.30 N 31 1 "O4'" A DA 16 ? ? "C1'" A DA 16 ? ? N9 A DA 16 ? ? 112.42 108.30 4.12 0.30 N 32 1 "O4'" A DA 21 ? ? "C1'" A DA 21 ? ? N9 A DA 21 ? ? 114.04 108.30 5.74 0.30 N 33 1 "O4'" B DA 22 ? ? "C1'" B DA 22 ? ? N9 B DA 22 ? ? 110.63 108.30 2.33 0.30 N 34 1 "O4'" B DT 23 ? ? "C1'" B DT 23 ? ? N1 B DT 23 ? ? 113.96 108.30 5.66 0.30 N 35 1 "O4'" B DT 24 ? ? "C1'" B DT 24 ? ? N1 B DT 24 ? ? 113.67 108.30 5.37 0.30 N 36 1 "C3'" B DA 25 ? ? "C2'" B DA 25 ? ? "C1'" B DA 25 ? ? 95.79 102.40 -6.61 0.80 N 37 1 "O4'" B DA 25 ? ? "C1'" B DA 25 ? ? N9 B DA 25 ? ? 114.02 108.30 5.72 0.30 N 38 1 "C3'" B DG 26 ? ? "C2'" B DG 26 ? ? "C1'" B DG 26 ? ? 96.78 102.40 -5.62 0.80 N 39 1 "O4'" B DG 26 ? ? "C1'" B DG 26 ? ? N9 B DG 26 ? ? 119.45 108.30 11.15 0.30 N 40 1 "O5'" B DG 27 ? ? "C5'" B DG 27 ? ? "C4'" B DG 27 ? ? 104.34 109.40 -5.06 0.80 N 41 1 "O5'" B DT 28 ? ? "C5'" B DT 28 ? ? "C4'" B DT 28 ? ? 103.00 109.40 -6.40 0.80 N 42 1 "O4'" B DT 28 ? ? "C1'" B DT 28 ? ? N1 B DT 28 ? ? 103.78 108.00 -4.22 0.70 N 43 1 P B DA 29 ? ? "O5'" B DA 29 ? ? "C5'" B DA 29 ? ? 110.22 120.90 -10.68 1.60 N 44 1 "O4'" B DT 31 ? ? "C1'" B DT 31 ? ? "C2'" B DT 31 ? ? 110.18 106.80 3.38 0.50 N 45 1 C6 B DT 31 ? ? N1 B DT 31 ? ? C2 B DT 31 ? ? 124.78 121.30 3.48 0.50 N 46 1 "C3'" B DT 31 ? ? "O3'" B DT 31 ? ? P B DT 32 ? ? 110.65 119.70 -9.05 1.20 Y 47 1 "C3'" B DT 32 ? ? "C2'" B DT 32 ? ? "C1'" B DT 32 ? ? 97.09 102.40 -5.31 0.80 N 48 1 "O4'" B DT 32 ? ? "C1'" B DT 32 ? ? N1 B DT 32 ? ? 112.61 108.30 4.31 0.30 N 49 1 "O4'" B DA 33 ? ? "C1'" B DA 33 ? ? N9 B DA 33 ? ? 111.97 108.30 3.67 0.30 N 50 1 "O4'" B DC 34 ? ? "C1'" B DC 34 ? ? N1 B DC 34 ? ? 111.86 108.30 3.56 0.30 N 51 1 N1 B DA 35 ? ? C6 B DA 35 ? ? N6 B DA 35 ? ? 122.45 118.60 3.85 0.60 N 52 1 "C3'" B DA 35 ? ? "O3'" B DA 35 ? ? P B DT 36 ? ? 129.37 119.70 9.67 1.20 Y 53 1 "O4'" B DT 36 ? ? "C1'" B DT 36 ? ? N1 B DT 36 ? ? 99.58 108.00 -8.42 0.70 N 54 1 N3 B DG 37 ? ? C4 B DG 37 ? ? N9 B DG 37 ? ? 130.35 126.00 4.35 0.60 N 55 1 C6 B DG 37 ? ? C5 B DG 37 ? ? N7 B DG 37 ? ? 126.45 130.40 -3.95 0.60 N 56 1 P B DG 38 ? ? "O5'" B DG 38 ? ? "C5'" B DG 38 ? ? 109.72 120.90 -11.18 1.60 N 57 1 "C3'" B DG 38 ? ? "C2'" B DG 38 ? ? "C1'" B DG 38 ? ? 93.65 102.40 -8.75 0.80 N 58 1 "O4'" B DG 38 ? ? "C1'" B DG 38 ? ? "C2'" B DG 38 ? ? 101.06 105.90 -4.84 0.80 N 59 1 P B DC 39 ? ? "O5'" B DC 39 ? ? "C5'" B DC 39 ? ? 104.01 120.90 -16.89 1.60 N 60 1 "C3'" B DC 39 ? ? "O3'" B DC 39 ? ? P B DA 40 ? ? 128.00 119.70 8.30 1.20 Y 61 1 "O5'" B DA 40 ? ? "C5'" B DA 40 ? ? "C4'" B DA 40 ? ? 104.06 109.40 -5.34 0.80 N 62 1 P B DA 41 ? ? "O5'" B DA 41 ? ? "C5'" B DA 41 ? ? 110.48 120.90 -10.42 1.60 N 63 1 "O4'" B DA 41 ? ? "C1'" B DA 41 ? ? "C2'" B DA 41 ? ? 112.10 106.80 5.30 0.50 N 64 1 N9 B DA 41 ? ? "C1'" B DA 41 ? ? "C2'" B DA 41 ? ? 123.88 114.30 9.58 1.40 N 65 1 "O4'" B DA 41 ? ? "C1'" B DA 41 ? ? N9 B DA 41 ? ? 110.26 108.30 1.96 0.30 N 66 1 C4 B DA 41 ? ? C5 B DA 41 ? ? C6 B DA 41 ? ? 113.43 117.00 -3.57 0.50 N 67 1 "O4'" B DA 42 ? ? "C1'" B DA 42 ? ? N9 B DA 42 ? ? 112.46 108.30 4.16 0.30 N 68 1 NE D ARG 30 ? ? CZ D ARG 30 ? ? NH1 D ARG 30 ? ? 123.51 120.30 3.21 0.50 N 69 1 NE D ARG 53 ? ? CZ D ARG 53 ? ? NH2 D ARG 53 ? ? 116.22 120.30 -4.08 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER C 36 ? ? -38.68 -74.64 2 1 GLU C 42 ? ? -51.25 -7.50 3 1 ARG C 53 ? ? -38.16 -30.15 4 1 ASN D 23 ? ? -170.23 131.37 5 1 GLN D 32 ? ? -53.99 -75.38 6 1 GLN D 33 ? ? -28.54 -51.22 7 1 LYS D 58 ? ? -23.54 -19.99 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 C MET -1 ? C MET 1 2 1 Y 1 C ASP 0 ? C ASP 2 3 1 Y 1 C GLU 1 ? C GLU 3 4 1 Y 1 C LYS 2 ? C LYS 4 5 1 Y 1 D MET -1 ? D MET 1 6 1 Y 1 D ASP 0 ? D ASP 2 7 1 Y 1 D GLU 1 ? D GLU 3 8 1 Y 1 D LYS 2 ? D LYS 4 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 DA OP3 O N N 74 DA P P N N 75 DA OP1 O N N 76 DA OP2 O N N 77 DA "O5'" O N N 78 DA "C5'" C N N 79 DA "C4'" C N R 80 DA "O4'" O N N 81 DA "C3'" C N S 82 DA "O3'" O N N 83 DA "C2'" C N N 84 DA "C1'" C N R 85 DA N9 N Y N 86 DA C8 C Y N 87 DA N7 N Y N 88 DA C5 C Y N 89 DA C6 C Y N 90 DA N6 N N N 91 DA N1 N Y N 92 DA C2 C Y N 93 DA N3 N Y N 94 DA C4 C Y N 95 DA HOP3 H N N 96 DA HOP2 H N N 97 DA "H5'" H N N 98 DA "H5''" H N N 99 DA "H4'" H N N 100 DA "H3'" H N N 101 DA "HO3'" H N N 102 DA "H2'" H N N 103 DA "H2''" H N N 104 DA "H1'" H N N 105 DA H8 H N N 106 DA H61 H N N 107 DA H62 H N N 108 DA H2 H N N 109 DC OP3 O N N 110 DC P P N N 111 DC OP1 O N N 112 DC OP2 O N N 113 DC "O5'" O N N 114 DC "C5'" C N N 115 DC "C4'" C N R 116 DC "O4'" O N N 117 DC "C3'" C N S 118 DC "O3'" O N N 119 DC "C2'" C N N 120 DC "C1'" C N R 121 DC N1 N N N 122 DC C2 C N N 123 DC O2 O N N 124 DC N3 N N N 125 DC C4 C N N 126 DC N4 N N N 127 DC C5 C N N 128 DC C6 C N N 129 DC HOP3 H N N 130 DC HOP2 H N N 131 DC "H5'" H N N 132 DC "H5''" H N N 133 DC "H4'" H N N 134 DC "H3'" H N N 135 DC "HO3'" H N N 136 DC "H2'" H N N 137 DC "H2''" H N N 138 DC "H1'" H N N 139 DC H41 H N N 140 DC H42 H N N 141 DC H5 H N N 142 DC H6 H N N 143 DG OP3 O N N 144 DG P P N N 145 DG OP1 O N N 146 DG OP2 O N N 147 DG "O5'" O N N 148 DG "C5'" C N N 149 DG "C4'" C N R 150 DG "O4'" O N N 151 DG "C3'" C N S 152 DG "O3'" O N N 153 DG "C2'" C N N 154 DG "C1'" C N R 155 DG N9 N Y N 156 DG C8 C Y N 157 DG N7 N Y N 158 DG C5 C Y N 159 DG C6 C N N 160 DG O6 O N N 161 DG N1 N N N 162 DG C2 C N N 163 DG N2 N N N 164 DG N3 N N N 165 DG C4 C Y N 166 DG HOP3 H N N 167 DG HOP2 H N N 168 DG "H5'" H N N 169 DG "H5''" H N N 170 DG "H4'" H N N 171 DG "H3'" H N N 172 DG "HO3'" H N N 173 DG "H2'" H N N 174 DG "H2''" H N N 175 DG "H1'" H N N 176 DG H8 H N N 177 DG H1 H N N 178 DG H21 H N N 179 DG H22 H N N 180 DT OP3 O N N 181 DT P P N N 182 DT OP1 O N N 183 DT OP2 O N N 184 DT "O5'" O N N 185 DT "C5'" C N N 186 DT "C4'" C N R 187 DT "O4'" O N N 188 DT "C3'" C N S 189 DT "O3'" O N N 190 DT "C2'" C N N 191 DT "C1'" C N R 192 DT N1 N N N 193 DT C2 C N N 194 DT O2 O N N 195 DT N3 N N N 196 DT C4 C N N 197 DT O4 O N N 198 DT C5 C N N 199 DT C7 C N N 200 DT C6 C N N 201 DT HOP3 H N N 202 DT HOP2 H N N 203 DT "H5'" H N N 204 DT "H5''" H N N 205 DT "H4'" H N N 206 DT "H3'" H N N 207 DT "HO3'" H N N 208 DT "H2'" H N N 209 DT "H2''" H N N 210 DT "H1'" H N N 211 DT H3 H N N 212 DT H71 H N N 213 DT H72 H N N 214 DT H73 H N N 215 DT H6 H N N 216 GLN N N N N 217 GLN CA C N S 218 GLN C C N N 219 GLN O O N N 220 GLN CB C N N 221 GLN CG C N N 222 GLN CD C N N 223 GLN OE1 O N N 224 GLN NE2 N N N 225 GLN OXT O N N 226 GLN H H N N 227 GLN H2 H N N 228 GLN HA H N N 229 GLN HB2 H N N 230 GLN HB3 H N N 231 GLN HG2 H N N 232 GLN HG3 H N N 233 GLN HE21 H N N 234 GLN HE22 H N N 235 GLN HXT H N N 236 GLU N N N N 237 GLU CA C N S 238 GLU C C N N 239 GLU O O N N 240 GLU CB C N N 241 GLU CG C N N 242 GLU CD C N N 243 GLU OE1 O N N 244 GLU OE2 O N N 245 GLU OXT O N N 246 GLU H H N N 247 GLU H2 H N N 248 GLU HA H N N 249 GLU HB2 H N N 250 GLU HB3 H N N 251 GLU HG2 H N N 252 GLU HG3 H N N 253 GLU HE2 H N N 254 GLU HXT H N N 255 GLY N N N N 256 GLY CA C N N 257 GLY C C N N 258 GLY O O N N 259 GLY OXT O N N 260 GLY H H N N 261 GLY H2 H N N 262 GLY HA2 H N N 263 GLY HA3 H N N 264 GLY HXT H N N 265 ILE N N N N 266 ILE CA C N S 267 ILE C C N N 268 ILE O O N N 269 ILE CB C N S 270 ILE CG1 C N N 271 ILE CG2 C N N 272 ILE CD1 C N N 273 ILE OXT O N N 274 ILE H H N N 275 ILE H2 H N N 276 ILE HA H N N 277 ILE HB H N N 278 ILE HG12 H N N 279 ILE HG13 H N N 280 ILE HG21 H N N 281 ILE HG22 H N N 282 ILE HG23 H N N 283 ILE HD11 H N N 284 ILE HD12 H N N 285 ILE HD13 H N N 286 ILE HXT H N N 287 LEU N N N N 288 LEU CA C N S 289 LEU C C N N 290 LEU O O N N 291 LEU CB C N N 292 LEU CG C N N 293 LEU CD1 C N N 294 LEU CD2 C N N 295 LEU OXT O N N 296 LEU H H N N 297 LEU H2 H N N 298 LEU HA H N N 299 LEU HB2 H N N 300 LEU HB3 H N N 301 LEU HG H N N 302 LEU HD11 H N N 303 LEU HD12 H N N 304 LEU HD13 H N N 305 LEU HD21 H N N 306 LEU HD22 H N N 307 LEU HD23 H N N 308 LEU HXT H N N 309 LYS N N N N 310 LYS CA C N S 311 LYS C C N N 312 LYS O O N N 313 LYS CB C N N 314 LYS CG C N N 315 LYS CD C N N 316 LYS CE C N N 317 LYS NZ N N N 318 LYS OXT O N N 319 LYS H H N N 320 LYS H2 H N N 321 LYS HA H N N 322 LYS HB2 H N N 323 LYS HB3 H N N 324 LYS HG2 H N N 325 LYS HG3 H N N 326 LYS HD2 H N N 327 LYS HD3 H N N 328 LYS HE2 H N N 329 LYS HE3 H N N 330 LYS HZ1 H N N 331 LYS HZ2 H N N 332 LYS HZ3 H N N 333 LYS HXT H N N 334 MET N N N N 335 MET CA C N S 336 MET C C N N 337 MET O O N N 338 MET CB C N N 339 MET CG C N N 340 MET SD S N N 341 MET CE C N N 342 MET OXT O N N 343 MET H H N N 344 MET H2 H N N 345 MET HA H N N 346 MET HB2 H N N 347 MET HB3 H N N 348 MET HG2 H N N 349 MET HG3 H N N 350 MET HE1 H N N 351 MET HE2 H N N 352 MET HE3 H N N 353 MET HXT H N N 354 PHE N N N N 355 PHE CA C N S 356 PHE C C N N 357 PHE O O N N 358 PHE CB C N N 359 PHE CG C Y N 360 PHE CD1 C Y N 361 PHE CD2 C Y N 362 PHE CE1 C Y N 363 PHE CE2 C Y N 364 PHE CZ C Y N 365 PHE OXT O N N 366 PHE H H N N 367 PHE H2 H N N 368 PHE HA H N N 369 PHE HB2 H N N 370 PHE HB3 H N N 371 PHE HD1 H N N 372 PHE HD2 H N N 373 PHE HE1 H N N 374 PHE HE2 H N N 375 PHE HZ H N N 376 PHE HXT H N N 377 PRO N N N N 378 PRO CA C N S 379 PRO C C N N 380 PRO O O N N 381 PRO CB C N N 382 PRO CG C N N 383 PRO CD C N N 384 PRO OXT O N N 385 PRO H H N N 386 PRO HA H N N 387 PRO HB2 H N N 388 PRO HB3 H N N 389 PRO HG2 H N N 390 PRO HG3 H N N 391 PRO HD2 H N N 392 PRO HD3 H N N 393 PRO HXT H N N 394 SER N N N N 395 SER CA C N S 396 SER C C N N 397 SER O O N N 398 SER CB C N N 399 SER OG O N N 400 SER OXT O N N 401 SER H H N N 402 SER H2 H N N 403 SER HA H N N 404 SER HB2 H N N 405 SER HB3 H N N 406 SER HG H N N 407 SER HXT H N N 408 THR N N N N 409 THR CA C N S 410 THR C C N N 411 THR O O N N 412 THR CB C N R 413 THR OG1 O N N 414 THR CG2 C N N 415 THR OXT O N N 416 THR H H N N 417 THR H2 H N N 418 THR HA H N N 419 THR HB H N N 420 THR HG1 H N N 421 THR HG21 H N N 422 THR HG22 H N N 423 THR HG23 H N N 424 THR HXT H N N 425 TRP N N N N 426 TRP CA C N S 427 TRP C C N N 428 TRP O O N N 429 TRP CB C N N 430 TRP CG C Y N 431 TRP CD1 C Y N 432 TRP CD2 C Y N 433 TRP NE1 N Y N 434 TRP CE2 C Y N 435 TRP CE3 C Y N 436 TRP CZ2 C Y N 437 TRP CZ3 C Y N 438 TRP CH2 C Y N 439 TRP OXT O N N 440 TRP H H N N 441 TRP H2 H N N 442 TRP HA H N N 443 TRP HB2 H N N 444 TRP HB3 H N N 445 TRP HD1 H N N 446 TRP HE1 H N N 447 TRP HE3 H N N 448 TRP HZ2 H N N 449 TRP HZ3 H N N 450 TRP HH2 H N N 451 TRP HXT H N N 452 TYR N N N N 453 TYR CA C N S 454 TYR C C N N 455 TYR O O N N 456 TYR CB C N N 457 TYR CG C Y N 458 TYR CD1 C Y N 459 TYR CD2 C Y N 460 TYR CE1 C Y N 461 TYR CE2 C Y N 462 TYR CZ C Y N 463 TYR OH O N N 464 TYR OXT O N N 465 TYR H H N N 466 TYR H2 H N N 467 TYR HA H N N 468 TYR HB2 H N N 469 TYR HB3 H N N 470 TYR HD1 H N N 471 TYR HD2 H N N 472 TYR HE1 H N N 473 TYR HE2 H N N 474 TYR HH H N N 475 TYR HXT H N N 476 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 DA OP3 P sing N N 70 DA OP3 HOP3 sing N N 71 DA P OP1 doub N N 72 DA P OP2 sing N N 73 DA P "O5'" sing N N 74 DA OP2 HOP2 sing N N 75 DA "O5'" "C5'" sing N N 76 DA "C5'" "C4'" sing N N 77 DA "C5'" "H5'" sing N N 78 DA "C5'" "H5''" sing N N 79 DA "C4'" "O4'" sing N N 80 DA "C4'" "C3'" sing N N 81 DA "C4'" "H4'" sing N N 82 DA "O4'" "C1'" sing N N 83 DA "C3'" "O3'" sing N N 84 DA "C3'" "C2'" sing N N 85 DA "C3'" "H3'" sing N N 86 DA "O3'" "HO3'" sing N N 87 DA "C2'" "C1'" sing N N 88 DA "C2'" "H2'" sing N N 89 DA "C2'" "H2''" sing N N 90 DA "C1'" N9 sing N N 91 DA "C1'" "H1'" sing N N 92 DA N9 C8 sing Y N 93 DA N9 C4 sing Y N 94 DA C8 N7 doub Y N 95 DA C8 H8 sing N N 96 DA N7 C5 sing Y N 97 DA C5 C6 sing Y N 98 DA C5 C4 doub Y N 99 DA C6 N6 sing N N 100 DA C6 N1 doub Y N 101 DA N6 H61 sing N N 102 DA N6 H62 sing N N 103 DA N1 C2 sing Y N 104 DA C2 N3 doub Y N 105 DA C2 H2 sing N N 106 DA N3 C4 sing Y N 107 DC OP3 P sing N N 108 DC OP3 HOP3 sing N N 109 DC P OP1 doub N N 110 DC P OP2 sing N N 111 DC P "O5'" sing N N 112 DC OP2 HOP2 sing N N 113 DC "O5'" "C5'" sing N N 114 DC "C5'" "C4'" sing N N 115 DC "C5'" "H5'" sing N N 116 DC "C5'" "H5''" sing N N 117 DC "C4'" "O4'" sing N N 118 DC "C4'" "C3'" sing N N 119 DC "C4'" "H4'" sing N N 120 DC "O4'" "C1'" sing N N 121 DC "C3'" "O3'" sing N N 122 DC "C3'" "C2'" sing N N 123 DC "C3'" "H3'" sing N N 124 DC "O3'" "HO3'" sing N N 125 DC "C2'" "C1'" sing N N 126 DC "C2'" "H2'" sing N N 127 DC "C2'" "H2''" sing N N 128 DC "C1'" N1 sing N N 129 DC "C1'" "H1'" sing N N 130 DC N1 C2 sing N N 131 DC N1 C6 sing N N 132 DC C2 O2 doub N N 133 DC C2 N3 sing N N 134 DC N3 C4 doub N N 135 DC C4 N4 sing N N 136 DC C4 C5 sing N N 137 DC N4 H41 sing N N 138 DC N4 H42 sing N N 139 DC C5 C6 doub N N 140 DC C5 H5 sing N N 141 DC C6 H6 sing N N 142 DG OP3 P sing N N 143 DG OP3 HOP3 sing N N 144 DG P OP1 doub N N 145 DG P OP2 sing N N 146 DG P "O5'" sing N N 147 DG OP2 HOP2 sing N N 148 DG "O5'" "C5'" sing N N 149 DG "C5'" "C4'" sing N N 150 DG "C5'" "H5'" sing N N 151 DG "C5'" "H5''" sing N N 152 DG "C4'" "O4'" sing N N 153 DG "C4'" "C3'" sing N N 154 DG "C4'" "H4'" sing N N 155 DG "O4'" "C1'" sing N N 156 DG "C3'" "O3'" sing N N 157 DG "C3'" "C2'" sing N N 158 DG "C3'" "H3'" sing N N 159 DG "O3'" "HO3'" sing N N 160 DG "C2'" "C1'" sing N N 161 DG "C2'" "H2'" sing N N 162 DG "C2'" "H2''" sing N N 163 DG "C1'" N9 sing N N 164 DG "C1'" "H1'" sing N N 165 DG N9 C8 sing Y N 166 DG N9 C4 sing Y N 167 DG C8 N7 doub Y N 168 DG C8 H8 sing N N 169 DG N7 C5 sing Y N 170 DG C5 C6 sing N N 171 DG C5 C4 doub Y N 172 DG C6 O6 doub N N 173 DG C6 N1 sing N N 174 DG N1 C2 sing N N 175 DG N1 H1 sing N N 176 DG C2 N2 sing N N 177 DG C2 N3 doub N N 178 DG N2 H21 sing N N 179 DG N2 H22 sing N N 180 DG N3 C4 sing N N 181 DT OP3 P sing N N 182 DT OP3 HOP3 sing N N 183 DT P OP1 doub N N 184 DT P OP2 sing N N 185 DT P "O5'" sing N N 186 DT OP2 HOP2 sing N N 187 DT "O5'" "C5'" sing N N 188 DT "C5'" "C4'" sing N N 189 DT "C5'" "H5'" sing N N 190 DT "C5'" "H5''" sing N N 191 DT "C4'" "O4'" sing N N 192 DT "C4'" "C3'" sing N N 193 DT "C4'" "H4'" sing N N 194 DT "O4'" "C1'" sing N N 195 DT "C3'" "O3'" sing N N 196 DT "C3'" "C2'" sing N N 197 DT "C3'" "H3'" sing N N 198 DT "O3'" "HO3'" sing N N 199 DT "C2'" "C1'" sing N N 200 DT "C2'" "H2'" sing N N 201 DT "C2'" "H2''" sing N N 202 DT "C1'" N1 sing N N 203 DT "C1'" "H1'" sing N N 204 DT N1 C2 sing N N 205 DT N1 C6 sing N N 206 DT C2 O2 doub N N 207 DT C2 N3 sing N N 208 DT N3 C4 sing N N 209 DT N3 H3 sing N N 210 DT C4 O4 doub N N 211 DT C4 C5 sing N N 212 DT C5 C7 sing N N 213 DT C5 C6 doub N N 214 DT C7 H71 sing N N 215 DT C7 H72 sing N N 216 DT C7 H73 sing N N 217 DT C6 H6 sing N N 218 GLN N CA sing N N 219 GLN N H sing N N 220 GLN N H2 sing N N 221 GLN CA C sing N N 222 GLN CA CB sing N N 223 GLN CA HA sing N N 224 GLN C O doub N N 225 GLN C OXT sing N N 226 GLN CB CG sing N N 227 GLN CB HB2 sing N N 228 GLN CB HB3 sing N N 229 GLN CG CD sing N N 230 GLN CG HG2 sing N N 231 GLN CG HG3 sing N N 232 GLN CD OE1 doub N N 233 GLN CD NE2 sing N N 234 GLN NE2 HE21 sing N N 235 GLN NE2 HE22 sing N N 236 GLN OXT HXT sing N N 237 GLU N CA sing N N 238 GLU N H sing N N 239 GLU N H2 sing N N 240 GLU CA C sing N N 241 GLU CA CB sing N N 242 GLU CA HA sing N N 243 GLU C O doub N N 244 GLU C OXT sing N N 245 GLU CB CG sing N N 246 GLU CB HB2 sing N N 247 GLU CB HB3 sing N N 248 GLU CG CD sing N N 249 GLU CG HG2 sing N N 250 GLU CG HG3 sing N N 251 GLU CD OE1 doub N N 252 GLU CD OE2 sing N N 253 GLU OE2 HE2 sing N N 254 GLU OXT HXT sing N N 255 GLY N CA sing N N 256 GLY N H sing N N 257 GLY N H2 sing N N 258 GLY CA C sing N N 259 GLY CA HA2 sing N N 260 GLY CA HA3 sing N N 261 GLY C O doub N N 262 GLY C OXT sing N N 263 GLY OXT HXT sing N N 264 ILE N CA sing N N 265 ILE N H sing N N 266 ILE N H2 sing N N 267 ILE CA C sing N N 268 ILE CA CB sing N N 269 ILE CA HA sing N N 270 ILE C O doub N N 271 ILE C OXT sing N N 272 ILE CB CG1 sing N N 273 ILE CB CG2 sing N N 274 ILE CB HB sing N N 275 ILE CG1 CD1 sing N N 276 ILE CG1 HG12 sing N N 277 ILE CG1 HG13 sing N N 278 ILE CG2 HG21 sing N N 279 ILE CG2 HG22 sing N N 280 ILE CG2 HG23 sing N N 281 ILE CD1 HD11 sing N N 282 ILE CD1 HD12 sing N N 283 ILE CD1 HD13 sing N N 284 ILE OXT HXT sing N N 285 LEU N CA sing N N 286 LEU N H sing N N 287 LEU N H2 sing N N 288 LEU CA C sing N N 289 LEU CA CB sing N N 290 LEU CA HA sing N N 291 LEU C O doub N N 292 LEU C OXT sing N N 293 LEU CB CG sing N N 294 LEU CB HB2 sing N N 295 LEU CB HB3 sing N N 296 LEU CG CD1 sing N N 297 LEU CG CD2 sing N N 298 LEU CG HG sing N N 299 LEU CD1 HD11 sing N N 300 LEU CD1 HD12 sing N N 301 LEU CD1 HD13 sing N N 302 LEU CD2 HD21 sing N N 303 LEU CD2 HD22 sing N N 304 LEU CD2 HD23 sing N N 305 LEU OXT HXT sing N N 306 LYS N CA sing N N 307 LYS N H sing N N 308 LYS N H2 sing N N 309 LYS CA C sing N N 310 LYS CA CB sing N N 311 LYS CA HA sing N N 312 LYS C O doub N N 313 LYS C OXT sing N N 314 LYS CB CG sing N N 315 LYS CB HB2 sing N N 316 LYS CB HB3 sing N N 317 LYS CG CD sing N N 318 LYS CG HG2 sing N N 319 LYS CG HG3 sing N N 320 LYS CD CE sing N N 321 LYS CD HD2 sing N N 322 LYS CD HD3 sing N N 323 LYS CE NZ sing N N 324 LYS CE HE2 sing N N 325 LYS CE HE3 sing N N 326 LYS NZ HZ1 sing N N 327 LYS NZ HZ2 sing N N 328 LYS NZ HZ3 sing N N 329 LYS OXT HXT sing N N 330 MET N CA sing N N 331 MET N H sing N N 332 MET N H2 sing N N 333 MET CA C sing N N 334 MET CA CB sing N N 335 MET CA HA sing N N 336 MET C O doub N N 337 MET C OXT sing N N 338 MET CB CG sing N N 339 MET CB HB2 sing N N 340 MET CB HB3 sing N N 341 MET CG SD sing N N 342 MET CG HG2 sing N N 343 MET CG HG3 sing N N 344 MET SD CE sing N N 345 MET CE HE1 sing N N 346 MET CE HE2 sing N N 347 MET CE HE3 sing N N 348 MET OXT HXT sing N N 349 PHE N CA sing N N 350 PHE N H sing N N 351 PHE N H2 sing N N 352 PHE CA C sing N N 353 PHE CA CB sing N N 354 PHE CA HA sing N N 355 PHE C O doub N N 356 PHE C OXT sing N N 357 PHE CB CG sing N N 358 PHE CB HB2 sing N N 359 PHE CB HB3 sing N N 360 PHE CG CD1 doub Y N 361 PHE CG CD2 sing Y N 362 PHE CD1 CE1 sing Y N 363 PHE CD1 HD1 sing N N 364 PHE CD2 CE2 doub Y N 365 PHE CD2 HD2 sing N N 366 PHE CE1 CZ doub Y N 367 PHE CE1 HE1 sing N N 368 PHE CE2 CZ sing Y N 369 PHE CE2 HE2 sing N N 370 PHE CZ HZ sing N N 371 PHE OXT HXT sing N N 372 PRO N CA sing N N 373 PRO N CD sing N N 374 PRO N H sing N N 375 PRO CA C sing N N 376 PRO CA CB sing N N 377 PRO CA HA sing N N 378 PRO C O doub N N 379 PRO C OXT sing N N 380 PRO CB CG sing N N 381 PRO CB HB2 sing N N 382 PRO CB HB3 sing N N 383 PRO CG CD sing N N 384 PRO CG HG2 sing N N 385 PRO CG HG3 sing N N 386 PRO CD HD2 sing N N 387 PRO CD HD3 sing N N 388 PRO OXT HXT sing N N 389 SER N CA sing N N 390 SER N H sing N N 391 SER N H2 sing N N 392 SER CA C sing N N 393 SER CA CB sing N N 394 SER CA HA sing N N 395 SER C O doub N N 396 SER C OXT sing N N 397 SER CB OG sing N N 398 SER CB HB2 sing N N 399 SER CB HB3 sing N N 400 SER OG HG sing N N 401 SER OXT HXT sing N N 402 THR N CA sing N N 403 THR N H sing N N 404 THR N H2 sing N N 405 THR CA C sing N N 406 THR CA CB sing N N 407 THR CA HA sing N N 408 THR C O doub N N 409 THR C OXT sing N N 410 THR CB OG1 sing N N 411 THR CB CG2 sing N N 412 THR CB HB sing N N 413 THR OG1 HG1 sing N N 414 THR CG2 HG21 sing N N 415 THR CG2 HG22 sing N N 416 THR CG2 HG23 sing N N 417 THR OXT HXT sing N N 418 TRP N CA sing N N 419 TRP N H sing N N 420 TRP N H2 sing N N 421 TRP CA C sing N N 422 TRP CA CB sing N N 423 TRP CA HA sing N N 424 TRP C O doub N N 425 TRP C OXT sing N N 426 TRP CB CG sing N N 427 TRP CB HB2 sing N N 428 TRP CB HB3 sing N N 429 TRP CG CD1 doub Y N 430 TRP CG CD2 sing Y N 431 TRP CD1 NE1 sing Y N 432 TRP CD1 HD1 sing N N 433 TRP CD2 CE2 doub Y N 434 TRP CD2 CE3 sing Y N 435 TRP NE1 CE2 sing Y N 436 TRP NE1 HE1 sing N N 437 TRP CE2 CZ2 sing Y N 438 TRP CE3 CZ3 doub Y N 439 TRP CE3 HE3 sing N N 440 TRP CZ2 CH2 doub Y N 441 TRP CZ2 HZ2 sing N N 442 TRP CZ3 CH2 sing Y N 443 TRP CZ3 HZ3 sing N N 444 TRP CH2 HH2 sing N N 445 TRP OXT HXT sing N N 446 TYR N CA sing N N 447 TYR N H sing N N 448 TYR N H2 sing N N 449 TYR CA C sing N N 450 TYR CA CB sing N N 451 TYR CA HA sing N N 452 TYR C O doub N N 453 TYR C OXT sing N N 454 TYR CB CG sing N N 455 TYR CB HB2 sing N N 456 TYR CB HB3 sing N N 457 TYR CG CD1 doub Y N 458 TYR CG CD2 sing Y N 459 TYR CD1 CE1 sing Y N 460 TYR CD1 HD1 sing N N 461 TYR CD2 CE2 doub Y N 462 TYR CD2 HD2 sing N N 463 TYR CE1 CZ doub Y N 464 TYR CE1 HE1 sing N N 465 TYR CE2 CZ sing Y N 466 TYR CE2 HE2 sing N N 467 TYR CZ OH sing N N 468 TYR OH HH sing N N 469 TYR OXT HXT sing N N 470 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1HDD 'double helix' 1HDD 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DT 2 1_555 B DA 21 1_555 0.789 0.011 0.111 3.074 -7.201 11.385 1 A_DT2:DA42_B A 2 ? B 42 ? ? 1 1 A DT 3 1_555 B DA 20 1_555 -0.254 -0.170 0.544 -9.982 -1.371 -9.324 2 A_DT3:DA41_B A 3 ? B 41 ? 20 1 1 A DT 4 1_555 B DA 19 1_555 -0.517 -0.161 -0.161 -5.559 -4.397 -0.606 3 A_DT4:DA40_B A 4 ? B 40 ? 20 1 1 A DG 5 1_555 B DC 18 1_555 -0.670 -0.407 0.040 -13.364 -2.404 -5.463 4 A_DG5:DC39_B A 5 ? B 39 ? 19 1 1 A DC 6 1_555 B DG 17 1_555 -0.420 -0.446 0.528 -7.699 -6.386 -11.851 5 A_DC6:DG38_B A 6 ? B 38 ? 19 1 1 A DC 7 1_555 B DG 16 1_555 -0.935 -0.587 0.090 -6.031 -5.362 -0.834 6 A_DC7:DG37_B A 7 ? B 37 ? 19 1 1 A DA 8 1_555 B DT 15 1_555 -1.007 -0.652 -0.022 8.290 -3.633 5.539 7 A_DA8:DT36_B A 8 ? B 36 ? 20 1 1 A DT 9 1_555 B DA 14 1_555 -1.113 -0.486 0.200 -3.061 -14.513 2.759 8 A_DT9:DA35_B A 9 ? B 35 ? 20 1 1 A DG 10 1_555 B DC 13 1_555 -0.329 -0.628 -0.565 -6.078 -9.878 -2.977 9 A_DG10:DC34_B A 10 ? B 34 ? 19 1 1 A DT 11 1_555 B DA 12 1_555 0.481 -0.399 -0.240 5.423 -8.318 -0.257 10 A_DT11:DA33_B A 11 ? B 33 ? 20 1 1 A DA 12 1_555 B DT 11 1_555 -0.347 -0.195 -0.350 -2.860 -16.520 -3.294 11 A_DA12:DT32_B A 12 ? B 32 ? 20 1 1 A DA 13 1_555 B DT 10 1_555 0.018 -0.205 -0.070 -1.515 -31.005 9.736 12 A_DA13:DT31_B A 13 ? B 31 ? 20 1 1 A DT 14 1_555 B DA 9 1_555 0.334 -0.310 0.035 5.869 -5.395 -0.345 13 A_DT14:DA30_B A 14 ? B 30 ? 20 1 1 A DT 15 1_555 B DA 8 1_555 0.200 -0.148 0.086 1.840 -5.971 1.874 14 A_DT15:DA29_B A 15 ? B 29 ? 20 1 1 A DA 16 1_555 B DT 7 1_555 0.005 0.074 0.406 8.492 -12.100 -10.150 15 A_DA16:DT28_B A 16 ? B 28 ? 20 1 1 A DC 17 1_555 B DG 6 1_555 0.097 -0.167 -0.035 17.997 -21.777 -0.164 16 A_DC17:DG27_B A 17 ? B 27 ? 19 1 1 A DC 18 1_555 B DG 5 1_555 -0.289 0.285 0.972 -25.403 -9.106 1.787 17 A_DC18:DG26_B A 18 ? B 26 ? 19 1 1 A DT 19 1_555 B DA 4 1_555 -0.618 -0.126 -0.261 0.080 -6.166 -18.322 18 A_DT19:DA25_B A 19 ? B 25 ? 20 1 1 A DA 20 1_555 B DT 3 1_555 0.620 -0.396 -0.414 -0.187 -10.107 6.301 19 A_DA20:DT24_B A 20 ? B 24 ? 20 1 1 A DA 21 1_555 B DT 2 1_555 -0.832 -0.303 -0.537 -5.119 -27.164 -1.094 20 A_DA21:DT23_B A 21 ? B 23 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DT 2 1_555 B DA 21 1_555 A DT 3 1_555 B DA 20 1_555 0.046 0.031 3.695 0.656 6.064 35.663 -0.916 0.031 3.651 9.813 -1.062 36.164 1 AA_DT2DT3:DA41DA42_BB A 2 ? B 42 ? A 3 ? B 41 ? 1 A DT 3 1_555 B DA 20 1_555 A DT 4 1_555 B DA 19 1_555 0.235 -0.380 3.079 7.332 2.839 29.097 -1.280 0.965 2.998 5.524 -14.267 30.118 2 AA_DT3DT4:DA40DA41_BB A 3 ? B 41 ? A 4 ? B 40 ? 1 A DT 4 1_555 B DA 19 1_555 A DG 5 1_555 B DC 18 1_555 0.441 -0.450 3.643 1.741 7.283 32.209 -2.151 -0.450 3.479 12.911 -3.086 33.046 3 AA_DT4DG5:DC39DA40_BB A 4 ? B 40 ? A 5 ? B 39 ? 1 A DG 5 1_555 B DC 18 1_555 A DC 6 1_555 B DG 17 1_555 -0.019 -0.685 3.267 -2.481 2.946 37.094 -1.458 -0.296 3.200 4.615 3.887 37.286 4 AA_DG5DC6:DG38DC39_BB A 5 ? B 39 ? A 6 ? B 38 ? 1 A DC 6 1_555 B DG 17 1_555 A DC 7 1_555 B DG 16 1_555 0.483 0.111 3.476 3.194 -6.831 23.182 2.552 -0.075 3.342 -16.449 -7.692 24.362 5 AA_DC6DC7:DG37DG38_BB A 6 ? B 38 ? A 7 ? B 37 ? 1 A DC 7 1_555 B DG 16 1_555 A DA 8 1_555 B DT 15 1_555 0.297 1.271 2.959 3.224 2.385 41.469 1.556 -0.104 3.038 3.358 -4.540 41.654 6 AA_DC7DA8:DT36DG37_BB A 7 ? B 37 ? A 8 ? B 36 ? 1 A DA 8 1_555 B DT 15 1_555 A DT 9 1_555 B DA 14 1_555 -0.350 -0.725 3.683 -6.264 7.923 34.042 -2.483 -0.448 3.443 13.177 10.417 35.466 7 AA_DA8DT9:DA35DT36_BB A 8 ? B 36 ? A 9 ? B 35 ? 1 A DT 9 1_555 B DA 14 1_555 A DG 10 1_555 B DC 13 1_555 -0.253 1.434 3.573 5.068 1.122 46.653 1.700 0.775 3.560 1.411 -6.376 46.925 8 AA_DT9DG10:DC34DA35_BB A 9 ? B 35 ? A 10 ? B 34 ? 1 A DG 10 1_555 B DC 13 1_555 A DT 11 1_555 B DA 12 1_555 0.086 -0.117 3.139 -3.989 7.290 30.141 -1.537 -0.882 2.994 13.694 7.494 31.240 9 AA_DG10DT11:DA33DC34_BB A 10 ? B 34 ? A 11 ? B 33 ? 1 A DT 11 1_555 B DA 12 1_555 A DA 12 1_555 B DT 11 1_555 -0.359 0.452 3.566 -3.038 3.409 34.837 0.187 0.094 3.610 5.663 5.048 35.126 10 AA_DT11DA12:DT32DA33_BB A 11 ? B 33 ? A 12 ? B 32 ? 1 A DA 12 1_555 B DT 11 1_555 A DA 13 1_555 B DT 10 1_555 0.637 0.144 3.347 1.483 -1.499 38.544 0.407 -0.776 3.360 -2.269 -2.244 38.600 11 AA_DA12DA13:DT31DT32_BB A 12 ? B 32 ? A 13 ? B 31 ? 1 A DA 13 1_555 B DT 10 1_555 A DT 14 1_555 B DA 9 1_555 -0.159 -0.700 3.224 -2.147 -0.929 29.503 -1.176 -0.138 3.247 -1.820 4.207 29.594 12 AA_DA13DT14:DA30DT31_BB A 13 ? B 31 ? A 14 ? B 30 ? 1 A DT 14 1_555 B DA 9 1_555 A DT 15 1_555 B DA 8 1_555 0.043 -0.698 3.394 2.042 4.242 33.059 -1.937 0.272 3.279 7.409 -3.566 33.383 13 AA_DT14DT15:DA29DA30_BB A 14 ? B 30 ? A 15 ? B 29 ? 1 A DT 15 1_555 B DA 8 1_555 A DA 16 1_555 B DT 7 1_555 -0.338 -0.207 3.107 1.039 8.774 31.941 -1.756 0.757 2.937 15.575 -1.845 33.110 14 AA_DT15DA16:DT28DA29_BB A 15 ? B 29 ? A 16 ? B 28 ? 1 A DA 16 1_555 B DT 7 1_555 A DC 17 1_555 B DG 6 1_555 0.830 -0.464 3.220 5.936 3.544 32.862 -1.385 -0.465 3.250 6.179 -10.350 33.562 15 AA_DA16DC17:DG27DT28_BB A 16 ? B 28 ? A 17 ? B 27 ? 1 A DC 17 1_555 B DG 6 1_555 A DC 18 1_555 B DG 5 1_555 0.503 -0.902 4.253 -5.996 11.762 40.125 -2.776 -1.476 3.747 16.608 8.466 42.156 16 AA_DC17DC18:DG26DG27_BB A 17 ? B 27 ? A 18 ? B 26 ? 1 A DC 18 1_555 B DG 5 1_555 A DT 19 1_555 B DA 4 1_555 -1.359 -0.173 2.686 8.085 7.548 26.189 -1.666 4.176 2.056 15.790 -16.914 28.391 17 AA_DC18DT19:DA25DG26_BB A 18 ? B 26 ? A 19 ? B 25 ? 1 A DT 19 1_555 B DA 4 1_555 A DA 20 1_555 B DT 3 1_555 1.076 0.314 3.627 0.072 8.089 40.202 -0.540 -1.529 3.623 11.626 -0.104 40.975 18 AA_DT19DA20:DT24DA25_BB A 19 ? B 25 ? A 20 ? B 24 ? 1 A DA 20 1_555 B DT 3 1_555 A DA 21 1_555 B DT 2 1_555 -0.136 -0.283 3.553 1.454 4.592 21.872 -2.566 0.932 3.406 11.916 -3.772 22.390 19 AA_DA20DA21:DT23DT24_BB A 20 ? B 24 ? A 21 ? B 23 ? # _atom_sites.entry_id 1HDD _atom_sites.fract_transf_matrix[1][1] 0.007622 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.004225 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021978 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015684 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_