HEADER PHOSPHOTRANSFERASE 10-FEB-94 1HDN TITLE THE HIGH-RESOLUTION STRUCTURE OF THE HISTIDINE-CONTAINING TITLE 2 PHOSPHOCARRIER PROTEIN HPR FROM ESCHERICHIA COLI DETERMINED BY TITLE 3 RESTRAINED MOLECULAR DYNAMICS FROM NMR NUCLEAR OVERHAUSER EFFECT DATA COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTIDINE-CONTAINING PHOSPHOCARRIER PROTEIN HPR; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562 KEYWDS PHOSPHOTRANSFERASE EXPDTA SOLUTION NMR NUMMDL 30 AUTHOR N.A.J.VAN NULAND,R.M.SCHEEK,G.T.ROBILLARD REVDAT 5 01-MAY-24 1HDN 1 REMARK REVDAT 4 29-NOV-17 1HDN 1 REMARK HELIX REVDAT 3 24-FEB-09 1HDN 1 VERSN REVDAT 2 01-APR-03 1HDN 1 JRNL REVDAT 1 22-JUN-94 1HDN 0 JRNL AUTH N.A.VAN NULAND,I.W.HANGYI,R.C.VAN SCHAIK,H.J.BERENDSEN, JRNL AUTH 2 W.F.VAN GUNSTEREN,R.M.SCHEEK,G.T.ROBILLARD JRNL TITL THE HIGH-RESOLUTION STRUCTURE OF THE HISTIDINE-CONTAINING JRNL TITL 2 PHOSPHOCARRIER PROTEIN HPR FROM ESCHERICHIA COLI DETERMINED JRNL TITL 3 BY RESTRAINED MOLECULAR DYNAMICS FROM NUCLEAR MAGNETIC JRNL TITL 4 RESONANCE NUCLEAR OVERHAUSER EFFECT DATA. JRNL REF J.MOL.BIOL. V. 237 544 1994 JRNL REFN ISSN 0022-2836 JRNL PMID 8158637 JRNL DOI 10.1006/JMBI.1994.1254 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH N.A.J.VAN NULAND,J.GROETZINGER,K.DIJKSTRA,R.M.SCHEEK, REMARK 1 AUTH 2 G.T.ROBILLARD REMARK 1 TITL DETERMINATION OF THE THREE-DIMENSIONAL STRUCTURE OF THE REMARK 1 TITL 2 HISTIDINE-CONTAINING PHOSPHOCARRIER PROTEIN HPR FROM REMARK 1 TITL 3 ESCHERICHIA COLI USING MULTIDIMENSIONAL NMR SPECTROSCOPY REMARK 1 REF EUR.J.BIOCHEM. V. 210 881 1992 REMARK 1 REFN ISSN 0014-2956 REMARK 1 REFERENCE 2 REMARK 1 AUTH A.E.TORDA,R.M.SCHEEK,W.F.VAN GUNSTEREN REMARK 1 TITL TIME-AVERAGED NUCLEAR OVERHAUSER EFFECT DISTANCE RESTRAINTS REMARK 1 TITL 2 APPLIED TO TENDAMISTAT REMARK 1 REF BIOCHEMISTRY V. 29 8164 1990 REMARK 1 REFN ISSN 0006-2960 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : GROMOS REMARK 3 AUTHORS : FUJINAGA,GROS,VAN GUNSTEREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1HDN COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000173797. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 30 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 32 HG SER A 43 1.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 2 ARG A 17 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 11 ARG A 17 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 12 ARG A 17 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 13 ARG A 17 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 14 ARG A 17 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 15 ARG A 17 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 17 ARG A 17 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 18 ARG A 17 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 19 ARG A 17 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 20 ARG A 17 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 21 ARG A 17 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 22 ARG A 17 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 23 ARG A 17 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 30 ARG A 17 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 14 57.45 -92.88 REMARK 500 1 THR A 16 -68.89 1.26 REMARK 500 1 ASN A 38 76.97 48.52 REMARK 500 1 LYS A 45 35.61 -95.24 REMARK 500 1 LEU A 55 76.78 -107.93 REMARK 500 1 GLN A 57 125.56 -35.90 REMARK 500 1 THR A 59 123.63 24.55 REMARK 500 2 HIS A 15 -147.46 -70.19 REMARK 500 2 ASN A 38 90.12 -19.32 REMARK 500 2 LYS A 45 31.17 -82.14 REMARK 500 2 SER A 46 113.32 -160.23 REMARK 500 2 LEU A 55 48.45 -100.38 REMARK 500 3 LEU A 14 69.35 -115.61 REMARK 500 3 ASN A 38 101.34 2.67 REMARK 500 3 GLN A 57 104.70 -49.01 REMARK 500 3 GLU A 70 -70.90 -8.00 REMARK 500 4 HIS A 15 -167.03 -67.41 REMARK 500 4 ASN A 38 87.51 -0.55 REMARK 500 4 THR A 56 -132.37 -135.30 REMARK 500 4 THR A 59 114.96 -3.09 REMARK 500 4 ASP A 69 33.73 -81.30 REMARK 500 4 LEU A 84 47.96 -108.64 REMARK 500 5 THR A 9 53.79 -118.48 REMARK 500 5 LEU A 14 58.18 -99.64 REMARK 500 5 HIS A 15 -169.60 -62.86 REMARK 500 5 ASN A 38 89.70 2.56 REMARK 500 5 LEU A 47 -71.00 -53.37 REMARK 500 5 LEU A 55 56.75 -103.82 REMARK 500 5 ASP A 69 47.05 -82.12 REMARK 500 6 ILE A 33 92.06 -64.57 REMARK 500 6 ASN A 38 67.47 32.81 REMARK 500 6 LYS A 40 93.69 -68.15 REMARK 500 6 SER A 41 106.41 -58.44 REMARK 500 6 SER A 43 106.09 -47.65 REMARK 500 6 GLN A 57 109.78 -18.12 REMARK 500 6 ASP A 69 40.52 -80.71 REMARK 500 6 GLU A 70 -73.25 -47.78 REMARK 500 7 PRO A 11 -76.64 -42.08 REMARK 500 7 HIS A 15 -155.52 -66.49 REMARK 500 7 ASN A 38 88.47 47.47 REMARK 500 7 ASP A 69 36.52 -83.28 REMARK 500 8 HIS A 15 -169.51 -72.34 REMARK 500 8 ASN A 38 61.97 35.12 REMARK 500 8 ASP A 69 33.49 -83.05 REMARK 500 9 ASN A 38 63.98 24.98 REMARK 500 10 HIS A 15 -154.93 -109.20 REMARK 500 10 ASN A 38 81.40 21.12 REMARK 500 10 THR A 52 33.71 -85.03 REMARK 500 10 LEU A 55 57.86 -94.96 REMARK 500 10 ASP A 69 42.71 -85.62 REMARK 500 REMARK 500 THIS ENTRY HAS 144 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 2 PHE A 22 0.08 SIDE CHAIN REMARK 500 3 HIS A 15 0.10 SIDE CHAIN REMARK 500 5 PHE A 22 0.12 SIDE CHAIN REMARK 500 6 HIS A 15 0.10 SIDE CHAIN REMARK 500 8 PHE A 2 0.08 SIDE CHAIN REMARK 500 8 HIS A 76 0.09 SIDE CHAIN REMARK 500 16 PHE A 48 0.09 SIDE CHAIN REMARK 500 17 PHE A 48 0.09 SIDE CHAIN REMARK 500 22 PHE A 22 0.09 SIDE CHAIN REMARK 500 23 PHE A 22 0.09 SIDE CHAIN REMARK 500 24 PHE A 2 0.09 SIDE CHAIN REMARK 500 26 PHE A 22 0.09 SIDE CHAIN REMARK 500 30 PHE A 2 0.07 SIDE CHAIN REMARK 500 30 PHE A 22 0.13 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 1 GLY A 13 -10.58 REMARK 500 2 MET A 1 10.21 REMARK 500 2 THR A 30 -10.10 REMARK 500 4 THR A 9 -12.95 REMARK 500 4 ASP A 69 -10.26 REMARK 500 5 GLU A 66 10.71 REMARK 500 5 ASP A 69 -10.54 REMARK 500 5 GLN A 71 -10.39 REMARK 500 6 ASP A 69 -10.33 REMARK 500 7 GLY A 13 -11.05 REMARK 500 8 LEU A 47 -10.93 REMARK 500 9 SER A 37 12.58 REMARK 500 9 THR A 59 10.64 REMARK 500 10 ASP A 69 -10.71 REMARK 500 11 SER A 37 10.69 REMARK 500 11 LEU A 47 -12.00 REMARK 500 14 LYS A 79 -10.59 REMARK 500 17 LEU A 14 -13.46 REMARK 500 17 SER A 37 10.35 REMARK 500 20 VAL A 60 12.17 REMARK 500 21 THR A 30 -11.06 REMARK 500 21 VAL A 60 10.40 REMARK 500 22 GLU A 32 11.79 REMARK 500 23 THR A 30 -10.11 REMARK 500 24 GLU A 32 11.71 REMARK 500 26 THR A 30 -10.22 REMARK 500 26 ASP A 69 -10.50 REMARK 500 27 LYS A 79 -10.26 REMARK 500 30 GLU A 32 10.26 REMARK 500 30 LYS A 49 -10.34 REMARK 500 30 LYS A 79 -10.04 REMARK 500 REMARK 500 REMARK: NULL DBREF 1HDN A 1 85 UNP P0AA04 PTHP_ECOLI 1 85 SEQRES 1 A 85 MET PHE GLN GLN GLU VAL THR ILE THR ALA PRO ASN GLY SEQRES 2 A 85 LEU HIS THR ARG PRO ALA ALA GLN PHE VAL LYS GLU ALA SEQRES 3 A 85 LYS GLY PHE THR SER GLU ILE THR VAL THR SER ASN GLY SEQRES 4 A 85 LYS SER ALA SER ALA LYS SER LEU PHE LYS LEU GLN THR SEQRES 5 A 85 LEU GLY LEU THR GLN GLY THR VAL VAL THR ILE SER ALA SEQRES 6 A 85 GLU GLY GLU ASP GLU GLN LYS ALA VAL GLU HIS LEU VAL SEQRES 7 A 85 LYS LEU MET ALA GLU LEU GLU HELIX 1 THR A 16 LYS A 27 1 12 HELIX 2 LEU A 47 THR A 52 1 6 HELIX 3 GLU A 70 GLU A 83 1 14 SHEET 1 S1 4 MET A 1 ILE A 8 0 SHEET 2 S1 4 VAL A 60 GLU A 66 -1 SHEET 3 S1 4 GLU A 32 SER A 37 -1 SHEET 4 S1 4 LYS A 40 SER A 43 -1 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1