HEADER HELICASE 31-MAR-97 1HEI TITLE STRUCTURE OF THE HEPATITIS C VIRUS RNA HELICASE DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: HCV HELICASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HEPATITIS C VIRUS (ISOLATE 1); SOURCE 3 ORGANISM_TAXID: 11104; SOURCE 4 STRAIN: H; SOURCE 5 VARIANT: 1A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: M15; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PQE-40 KEYWDS HELICASE, RNA, HEPATITIS, HCV, ATPASE, NTPASE EXPDTA X-RAY DIFFRACTION AUTHOR N.YAO,P.WEBER REVDAT 4 07-FEB-24 1HEI 1 REMARK SEQADV LINK REVDAT 3 24-FEB-09 1HEI 1 VERSN REVDAT 2 25-NOV-98 1HEI 1 REMARK TITLE SOURCE JRNL REVDAT 1 07-OCT-98 1HEI 0 JRNL AUTH N.YAO,T.HESSON,M.CABLE,Z.HONG,A.D.KWONG,H.V.LE,P.C.WEBER JRNL TITL STRUCTURE OF THE HEPATITIS C VIRUS RNA HELICASE DOMAIN. JRNL REF NAT.STRUCT.BIOL. V. 4 463 1997 JRNL REFN ISSN 1072-8368 JRNL PMID 9187654 JRNL DOI 10.1038/NSB0697-463 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH C.H.GROSS,S.SHUMAN REMARK 1 TITL THE QRXGRXGRXXXG MOTIF OF THE VACCINIA VIRUS DEXH BOX RNA REMARK 1 TITL 2 HELICASE NPH-II IS REQUIRED FOR ATP HYDROLYSIS AND RNA REMARK 1 TITL 3 UNWINDING BUT NOT FOR RNA BINDING REMARK 1 REF J.VIROL. V. 70 1706 1996 REMARK 1 REFN ISSN 0022-538X REMARK 1 REFERENCE 2 REMARK 1 AUTH L.JIN,D.L.PETERSON REMARK 1 TITL EXPRESSION, ISOLATION, AND CHARACTERIZATION OF THE HEPATITIS REMARK 1 TITL 2 C VIRUS ATPASE/RNA HELICASE REMARK 1 REF ARCH.BIOCHEM.BIOPHYS. V. 323 47 1995 REMARK 1 REFN ISSN 0003-9861 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 88.0 REMARK 3 NUMBER OF REFLECTIONS : 51534 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.320 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2466 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.19 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 74.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4308 REMARK 3 BIN R VALUE (WORKING SET) : 0.3200 REMARK 3 BIN FREE R VALUE : 0.3900 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 243 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6431 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 326 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.50880 REMARK 3 B22 (A**2) : -1.69960 REMARK 3 B33 (A**2) : -0.80920 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.30 REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : 8.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.908 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.74 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.590 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : GAUSS REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.500 ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.000 ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : 2.000 ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.500 ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PARHCSDX.PRO REMARK 3 PARAMETER FILE 2 : NULL REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPHCSDX.PRO REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1HEI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000173811. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-FEB-96 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH2R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51694 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 26.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.0 REMARK 200 DATA REDUNDANCY : 12.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05200 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 74.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.27000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIRAS REMARK 200 SOFTWARE USED: X-PLOR 3.1 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: HG AND SM DERIVATIZED CRYSTALS WERE USED IN MIRAS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50MM CA ACETATE, 20MM NACACODYLATE PH REMARK 280 6.5, 8% PEG5000 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 40.77000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.75000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.36500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.75000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.77000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 51.36500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 180 REMARK 465 SER A 181 REMARK 465 PRO A 182 REMARK 465 VAL A 183 REMARK 465 PHE A 184 REMARK 465 THR A 185 REMARK 465 ASP A 186 REMARK 465 VAL A 630 REMARK 465 ARG B 180 REMARK 465 SER B 181 REMARK 465 PRO B 182 REMARK 465 VAL B 183 REMARK 465 PHE B 184 REMARK 465 THR B 185 REMARK 465 ASP B 186 REMARK 465 ASN B 187 REMARK 465 ALA B 233 REMARK 465 ALA B 234 REMARK 465 THR B 235 REMARK 465 LEU B 236 REMARK 465 GLY B 237 REMARK 465 PHE B 238 REMARK 465 GLY B 239 REMARK 465 ALA B 240 REMARK 465 TYR B 241 REMARK 465 MET B 242 REMARK 465 SER B 243 REMARK 465 LYS B 244 REMARK 465 ALA B 245 REMARK 465 HIS B 246 REMARK 465 GLY B 247 REMARK 465 VAL B 248 REMARK 465 ASP B 249 REMARK 465 PRO B 250 REMARK 465 ASN B 251 REMARK 465 ILE B 252 REMARK 465 ARG B 253 REMARK 465 THR B 254 REMARK 465 GLY B 255 REMARK 465 VAL B 256 REMARK 465 ARG B 257 REMARK 465 THR B 258 REMARK 465 ILE B 259 REMARK 465 THR B 260 REMARK 465 THR B 261 REMARK 465 VAL B 629 REMARK 465 VAL B 630 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP B 437 O HOH B 1086 1.39 REMARK 500 O CYS A 279 N SER A 280 1.60 REMARK 500 OG SER A 439 OD1 ASP A 441 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 279 C SER A 280 N -0.263 REMARK 500 LYS A 589 C PRO A 590 N 0.211 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 279 O - C - N ANGL. DEV. = -34.5 DEGREES REMARK 500 ALA A 283 O - C - N ANGL. DEV. = -12.7 DEGREES REMARK 500 PRO A 590 C - N - CA ANGL. DEV. = -14.2 DEGREES REMARK 500 ASP B 441 N - CA - C ANGL. DEV. = -20.3 DEGREES REMARK 500 PRO B 442 C - N - CA ANGL. DEV. = -16.4 DEGREES REMARK 500 PRO B 442 C - N - CD ANGL. DEV. = 15.0 DEGREES REMARK 500 ARG B 481 NE - CZ - NH2 ANGL. DEV. = 3.8 DEGREES REMARK 500 MET B 485 CG - SD - CE ANGL. DEV. = 9.8 DEGREES REMARK 500 PHE B 486 O - C - N ANGL. DEV. = -14.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 197 136.64 -35.61 REMARK 500 HIS A 203 79.91 -117.14 REMARK 500 THR A 212 -61.92 -125.90 REMARK 500 LYS A 244 -75.58 -78.59 REMARK 500 HIS A 246 15.16 -142.99 REMARK 500 VAL A 256 -20.47 150.06 REMARK 500 ARG A 257 118.51 -162.40 REMARK 500 CYS A 279 45.04 -66.35 REMARK 500 VAL A 331 -116.28 -98.17 REMARK 500 SER A 332 -174.23 179.50 REMARK 500 HIS A 333 111.08 -169.34 REMARK 500 PRO A 334 39.87 -62.52 REMARK 500 LYS A 352 -159.15 -104.85 REMARK 500 VAL A 397 92.73 -54.67 REMARK 500 ASN A 403 48.80 -72.13 REMARK 500 ASP A 441 -114.40 -49.35 REMARK 500 GLU A 480 -166.84 -161.32 REMARK 500 ASP A 527 99.84 -67.94 REMARK 500 TRP A 582 31.57 -97.65 REMARK 500 ARG A 587 53.34 162.91 REMARK 500 THR A 591 45.18 -66.15 REMARK 500 HIS A 593 110.81 -39.03 REMARK 500 PRO B 205 -158.88 -86.19 REMARK 500 THR B 212 -68.43 -179.28 REMARK 500 PRO B 264 54.68 -63.21 REMARK 500 ILE B 265 109.02 -169.38 REMARK 500 SER B 268 -154.12 -134.78 REMARK 500 ALA B 283 -32.76 -158.32 REMARK 500 PRO B 325 174.96 -59.78 REMARK 500 VAL B 329 -164.05 -121.14 REMARK 500 ASN B 335 -37.74 178.29 REMARK 500 THR B 343 44.68 -79.12 REMARK 500 TYR B 350 78.46 57.30 REMARK 500 LYS B 352 -134.58 -102.08 REMARK 500 ARG B 393 86.33 -55.05 REMARK 500 VAL B 397 9.65 49.48 REMARK 500 ASP B 405 -7.09 56.95 REMARK 500 ASP B 412 6.29 -65.89 REMARK 500 THR B 419 97.63 59.51 REMARK 500 ASP B 421 80.83 51.36 REMARK 500 ASP B 441 -101.49 -70.89 REMARK 500 THR B 443 -95.25 -124.34 REMARK 500 GLU B 447 -158.63 -142.12 REMARK 500 ARG B 467 73.66 58.34 REMARK 500 VAL B 476 -71.73 -76.19 REMARK 500 GLU B 480 -131.36 -166.68 REMARK 500 ARG B 481 118.23 -162.07 REMARK 500 PRO B 482 80.02 -64.03 REMARK 500 SER B 483 -144.70 64.47 REMARK 500 GLN B 580 1.18 -57.44 REMARK 500 REMARK 500 THIS ENTRY HAS 54 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 CYS A 279 SER A 280 -130.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 563 0.07 SIDE CHAIN REMARK 500 TYR B 563 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 CYS A 279 -39.76 REMARK 500 PHE B 486 26.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 632 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 437 OD1 REMARK 620 2 ASP B 437 OD2 81.5 REMARK 620 3 GLU B 447 OE1 162.9 81.8 REMARK 620 4 GLU B 447 OE2 145.5 105.0 44.6 REMARK 620 5 HOH B1086 O 65.5 24.8 97.5 129.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 633 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 441 OD1 REMARK 620 2 ASP A 441 OD2 46.3 REMARK 620 3 THR A 445 OG1 60.1 106.3 REMARK 620 4 HOH A1317 O 135.5 132.6 99.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 632 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 633 DBREF 1HEI A 180 630 UNP P27958 POLG_HCVH 1206 1656 DBREF 1HEI B 180 630 UNP P27958 POLG_HCVH 1206 1656 SEQADV 1HEI GLN A 221 UNP P27958 LYS 1247 CONFLICT SEQADV 1HEI GLY A 277 UNP P27958 ALA 1303 CONFLICT SEQADV 1HEI LEU A 301 UNP P27958 SER 1327 CONFLICT SEQADV 1HEI ASN A 403 UNP P27958 SER 1429 CONFLICT SEQADV 1HEI MET A 505 UNP P27958 THR 1531 CONFLICT SEQADV 1HEI GLU A 530 UNP P27958 GLY 1556 CONFLICT SEQADV 1HEI TRP A 582 UNP P27958 ARG 1608 CONFLICT SEQADV 1HEI GLN B 221 UNP P27958 LYS 1247 CONFLICT SEQADV 1HEI GLY B 277 UNP P27958 ALA 1303 CONFLICT SEQADV 1HEI LEU B 301 UNP P27958 SER 1327 CONFLICT SEQADV 1HEI ASN B 403 UNP P27958 SER 1429 CONFLICT SEQADV 1HEI MET B 505 UNP P27958 THR 1531 CONFLICT SEQADV 1HEI GLU B 530 UNP P27958 GLY 1556 CONFLICT SEQADV 1HEI TRP B 582 UNP P27958 ARG 1608 CONFLICT SEQRES 1 A 451 ARG SER PRO VAL PHE THR ASP ASN SER SER PRO PRO ALA SEQRES 2 A 451 VAL PRO GLN SER PHE GLN VAL ALA HIS LEU HIS ALA PRO SEQRES 3 A 451 THR GLY SER GLY LYS SER THR LYS VAL PRO ALA ALA TYR SEQRES 4 A 451 ALA ALA GLN GLY TYR LYS VAL LEU VAL LEU ASN PRO SER SEQRES 5 A 451 VAL ALA ALA THR LEU GLY PHE GLY ALA TYR MET SER LYS SEQRES 6 A 451 ALA HIS GLY VAL ASP PRO ASN ILE ARG THR GLY VAL ARG SEQRES 7 A 451 THR ILE THR THR GLY SER PRO ILE THR TYR SER THR TYR SEQRES 8 A 451 GLY LYS PHE LEU ALA ASP GLY GLY CYS SER GLY GLY ALA SEQRES 9 A 451 TYR ASP ILE ILE ILE CYS ASP GLU CYS HIS SER THR ASP SEQRES 10 A 451 ALA THR SER ILE LEU GLY ILE GLY THR VAL LEU ASP GLN SEQRES 11 A 451 ALA GLU THR ALA GLY ALA ARG LEU VAL VAL LEU ALA THR SEQRES 12 A 451 ALA THR PRO PRO GLY SER VAL THR VAL SER HIS PRO ASN SEQRES 13 A 451 ILE GLU GLU VAL ALA LEU SER THR THR GLY GLU ILE PRO SEQRES 14 A 451 PHE TYR GLY LYS ALA ILE PRO LEU GLU VAL ILE LYS GLY SEQRES 15 A 451 GLY ARG HIS LEU ILE PHE CYS HIS SER LYS LYS LYS CYS SEQRES 16 A 451 ASP GLU LEU ALA ALA LYS LEU VAL ALA LEU GLY ILE ASN SEQRES 17 A 451 ALA VAL ALA TYR TYR ARG GLY LEU ASP VAL SER VAL ILE SEQRES 18 A 451 PRO THR ASN GLY ASP VAL VAL VAL VAL SER THR ASP ALA SEQRES 19 A 451 LEU MET THR GLY PHE THR GLY ASP PHE ASP SER VAL ILE SEQRES 20 A 451 ASP CYS ASN THR CYS VAL THR GLN THR VAL ASP PHE SER SEQRES 21 A 451 LEU ASP PRO THR PHE THR ILE GLU THR THR THR LEU PRO SEQRES 22 A 451 GLN ASP ALA VAL SER ARG THR GLN ARG ARG GLY ARG THR SEQRES 23 A 451 GLY ARG GLY LYS PRO GLY ILE TYR ARG PHE VAL ALA PRO SEQRES 24 A 451 GLY GLU ARG PRO SER GLY MET PHE ASP SER SER VAL LEU SEQRES 25 A 451 CYS GLU CYS TYR ASP ALA GLY CYS ALA TRP TYR GLU LEU SEQRES 26 A 451 MET PRO ALA GLU THR THR VAL ARG LEU ARG ALA TYR MET SEQRES 27 A 451 ASN THR PRO GLY LEU PRO VAL CYS GLN ASP HIS LEU GLU SEQRES 28 A 451 PHE TRP GLU GLY VAL PHE THR GLY LEU THR HIS ILE ASP SEQRES 29 A 451 ALA HIS PHE LEU SER GLN THR LYS GLN SER GLY GLU ASN SEQRES 30 A 451 PHE PRO TYR LEU VAL ALA TYR GLN ALA THR VAL CYS ALA SEQRES 31 A 451 ARG ALA GLN ALA PRO PRO PRO SER TRP ASP GLN MET TRP SEQRES 32 A 451 LYS CYS LEU ILE ARG LEU LYS PRO THR LEU HIS GLY PRO SEQRES 33 A 451 THR PRO LEU LEU TYR ARG LEU GLY ALA VAL GLN ASN GLU SEQRES 34 A 451 VAL THR LEU THR HIS PRO ILE THR LYS TYR ILE MET THR SEQRES 35 A 451 CYS MET SER ALA ASP LEU GLU VAL VAL SEQRES 1 B 451 ARG SER PRO VAL PHE THR ASP ASN SER SER PRO PRO ALA SEQRES 2 B 451 VAL PRO GLN SER PHE GLN VAL ALA HIS LEU HIS ALA PRO SEQRES 3 B 451 THR GLY SER GLY LYS SER THR LYS VAL PRO ALA ALA TYR SEQRES 4 B 451 ALA ALA GLN GLY TYR LYS VAL LEU VAL LEU ASN PRO SER SEQRES 5 B 451 VAL ALA ALA THR LEU GLY PHE GLY ALA TYR MET SER LYS SEQRES 6 B 451 ALA HIS GLY VAL ASP PRO ASN ILE ARG THR GLY VAL ARG SEQRES 7 B 451 THR ILE THR THR GLY SER PRO ILE THR TYR SER THR TYR SEQRES 8 B 451 GLY LYS PHE LEU ALA ASP GLY GLY CYS SER GLY GLY ALA SEQRES 9 B 451 TYR ASP ILE ILE ILE CYS ASP GLU CYS HIS SER THR ASP SEQRES 10 B 451 ALA THR SER ILE LEU GLY ILE GLY THR VAL LEU ASP GLN SEQRES 11 B 451 ALA GLU THR ALA GLY ALA ARG LEU VAL VAL LEU ALA THR SEQRES 12 B 451 ALA THR PRO PRO GLY SER VAL THR VAL SER HIS PRO ASN SEQRES 13 B 451 ILE GLU GLU VAL ALA LEU SER THR THR GLY GLU ILE PRO SEQRES 14 B 451 PHE TYR GLY LYS ALA ILE PRO LEU GLU VAL ILE LYS GLY SEQRES 15 B 451 GLY ARG HIS LEU ILE PHE CYS HIS SER LYS LYS LYS CYS SEQRES 16 B 451 ASP GLU LEU ALA ALA LYS LEU VAL ALA LEU GLY ILE ASN SEQRES 17 B 451 ALA VAL ALA TYR TYR ARG GLY LEU ASP VAL SER VAL ILE SEQRES 18 B 451 PRO THR ASN GLY ASP VAL VAL VAL VAL SER THR ASP ALA SEQRES 19 B 451 LEU MET THR GLY PHE THR GLY ASP PHE ASP SER VAL ILE SEQRES 20 B 451 ASP CYS ASN THR CYS VAL THR GLN THR VAL ASP PHE SER SEQRES 21 B 451 LEU ASP PRO THR PHE THR ILE GLU THR THR THR LEU PRO SEQRES 22 B 451 GLN ASP ALA VAL SER ARG THR GLN ARG ARG GLY ARG THR SEQRES 23 B 451 GLY ARG GLY LYS PRO GLY ILE TYR ARG PHE VAL ALA PRO SEQRES 24 B 451 GLY GLU ARG PRO SER GLY MET PHE ASP SER SER VAL LEU SEQRES 25 B 451 CYS GLU CYS TYR ASP ALA GLY CYS ALA TRP TYR GLU LEU SEQRES 26 B 451 MET PRO ALA GLU THR THR VAL ARG LEU ARG ALA TYR MET SEQRES 27 B 451 ASN THR PRO GLY LEU PRO VAL CYS GLN ASP HIS LEU GLU SEQRES 28 B 451 PHE TRP GLU GLY VAL PHE THR GLY LEU THR HIS ILE ASP SEQRES 29 B 451 ALA HIS PHE LEU SER GLN THR LYS GLN SER GLY GLU ASN SEQRES 30 B 451 PHE PRO TYR LEU VAL ALA TYR GLN ALA THR VAL CYS ALA SEQRES 31 B 451 ARG ALA GLN ALA PRO PRO PRO SER TRP ASP GLN MET TRP SEQRES 32 B 451 LYS CYS LEU ILE ARG LEU LYS PRO THR LEU HIS GLY PRO SEQRES 33 B 451 THR PRO LEU LEU TYR ARG LEU GLY ALA VAL GLN ASN GLU SEQRES 34 B 451 VAL THR LEU THR HIS PRO ILE THR LYS TYR ILE MET THR SEQRES 35 B 451 CYS MET SER ALA ASP LEU GLU VAL VAL HET CA A 633 1 HET CA B 632 1 HETNAM CA CALCIUM ION FORMUL 3 CA 2(CA 2+) FORMUL 5 HOH *326(H2 O) HELIX 1 1 LYS A 213 ALA A 220 1 8 HELIX 2 2 VAL A 232 ALA A 245 1 14 HELIX 3 3 TYR A 270 ASP A 276 1 7 HELIX 4 4 ALA A 297 ALA A 313 1 17 HELIX 5 5 LEU A 356 ILE A 359 1 4 HELIX 6 6 LYS A 371 ALA A 383 1 13 HELIX 7 7 ALA A 455 ARG A 464 1 10 HELIX 8 8 SER A 488 TRP A 501 1 14 HELIX 9 9 PRO A 506 ASN A 518 1 13 HELIX 10 10 LEU A 529 GLY A 538 1 10 HELIX 11 11 ALA A 544 GLN A 552 1 9 HELIX 12 12 PRO A 558 ALA A 571 1 14 HELIX 13 13 GLN A 580 LEU A 585 5 6 HELIX 14 14 PRO A 614 ASP A 626 1 13 HELIX 15 15 LYS B 213 ALA B 220 1 8 HELIX 16 16 TYR B 270 ALA B 275 1 6 HELIX 17 17 ALA B 297 GLN B 309 1 13 HELIX 18 18 LEU B 356 ILE B 359 1 4 HELIX 19 19 LYS B 371 LEU B 384 1 14 HELIX 20 20 ALA B 455 ARG B 464 1 10 HELIX 21 21 SER B 488 ALA B 500 1 13 HELIX 22 22 PRO B 506 ASN B 518 1 13 HELIX 23 23 LEU B 529 THR B 537 1 9 HELIX 24 24 ALA B 544 GLN B 552 1 9 HELIX 25 25 PRO B 558 ALA B 571 1 14 HELIX 26 26 GLN B 580 LEU B 585 5 6 HELIX 27 27 PRO B 614 ASP B 626 1 13 SHEET 1 A 7 GLN A 198 ALA A 200 0 SHEET 2 A 7 LEU A 317 ALA A 321 1 N VAL A 318 O GLN A 198 SHEET 3 A 7 ILE A 286 ASP A 290 1 N ILE A 287 O LEU A 317 SHEET 4 A 7 VAL A 225 ASN A 229 1 N LEU A 226 O ILE A 286 SHEET 5 A 7 ILE A 265 THR A 269 1 N THR A 266 O VAL A 225 SHEET 6 A 7 ASN A 251 THR A 254 1 N ASN A 251 O TYR A 267 SHEET 7 A 7 ARG A 257 ILE A 259 -1 N ILE A 259 O ILE A 252 SHEET 1 B 6 ILE A 336 ALA A 340 0 SHEET 2 B 6 GLY A 471 PHE A 475 1 N GLY A 471 O GLU A 337 SHEET 3 B 6 SER A 424 ASP A 427 1 N VAL A 425 O ILE A 472 SHEET 4 B 6 ARG A 363 PHE A 367 1 N LEU A 365 O SER A 424 SHEET 5 B 6 VAL A 406 SER A 410 1 N VAL A 406 O HIS A 364 SHEET 6 B 6 ALA A 388 TYR A 391 1 N VAL A 389 O VAL A 407 SHEET 1 C 2 ILE A 347 PHE A 349 0 SHEET 2 C 2 LYS A 352 ILE A 354 -1 N ILE A 354 O ILE A 347 SHEET 1 D 2 THR A 430 ASP A 437 0 SHEET 2 D 2 THR A 445 PRO A 452 -1 N LEU A 451 O CYS A 431 SHEET 1 E 5 GLN B 198 ALA B 200 0 SHEET 2 E 5 LEU B 317 LEU B 320 1 N VAL B 318 O GLN B 198 SHEET 3 E 5 ILE B 286 CYS B 289 1 N ILE B 287 O LEU B 317 SHEET 4 E 5 VAL B 225 ASN B 229 1 N LEU B 226 O ILE B 286 SHEET 5 E 5 ILE B 265 THR B 269 1 N THR B 266 O VAL B 225 SHEET 1 F 6 GLU B 337 ALA B 340 0 SHEET 2 F 6 ILE B 472 PHE B 475 1 N TYR B 473 O GLU B 337 SHEET 3 F 6 SER B 424 ASP B 427 1 N VAL B 425 O ILE B 472 SHEET 4 F 6 HIS B 364 PHE B 367 1 N LEU B 365 O SER B 424 SHEET 5 F 6 VAL B 407 SER B 410 1 N VAL B 408 O HIS B 364 SHEET 6 F 6 ALA B 388 TYR B 391 1 N VAL B 389 O VAL B 407 SHEET 1 G 2 THR B 430 ASP B 437 0 SHEET 2 G 2 THR B 445 PRO B 452 -1 N LEU B 451 O CYS B 431 LINK OD1 ASP A 437 CA CA B 632 1555 1555 2.77 LINK OD1 ASP A 441 CA CA A 633 1555 1555 2.97 LINK OD2 ASP A 441 CA CA A 633 1555 1555 2.68 LINK OG1 THR A 445 CA CA A 633 1555 1555 2.89 LINK CA CA A 633 O HOH A1317 1555 1555 2.34 LINK OD2 ASP B 437 CA CA B 632 1555 1555 3.23 LINK OE1 GLU B 447 CA CA B 632 1555 1555 2.93 LINK OE2 GLU B 447 CA CA B 632 1555 1555 2.90 LINK CA CA B 632 O HOH B1086 1555 1555 3.24 SITE 1 AC1 3 ASP A 437 ASP B 437 GLU B 447 SITE 1 AC2 5 SER A 439 ASP A 441 THR A 445 ARG A 601 SITE 2 AC2 5 HOH A1317 CRYST1 81.540 102.730 119.500 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012264 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009734 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008368 0.00000