HEADER ENDOCYTOSIS 30-NOV-00 1HFA TITLE CALM-N N-TERMINAL DOMAIN OF CLATHRIN ASSEMBLY LYMPHOID MYELOID TITLE 2 LEUKAEMIA PROTEIN, PI(4,5)P2 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: CLATHRIN ASSEMBLY PROTEIN SHORT FORM; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN; COMPND 5 SYNONYM: AP180-2, CALM-N; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX4T2; SOURCE 10 EXPRESSION_SYSTEM_GENE: CALM-N KEYWDS ENDOCYTOSIS, ADAPTOR EXPDTA X-RAY DIFFRACTION AUTHOR M.G.J.FORD,P.R.EVANS,H.T.MCMAHON REVDAT 5 13-DEC-23 1HFA 1 REMARK REVDAT 4 24-FEB-09 1HFA 1 VERSN REVDAT 3 01-AUG-03 1HFA 1 REMARK DBREF REVDAT 2 05-APR-01 1HFA 1 HETNAM FORMUL CONECT REVDAT 1 12-FEB-01 1HFA 0 JRNL AUTH M.G.J.FORD,B.M.F.PEARSE,M.K.HIGGINS,Y.VALLIS,D.J.OWEN, JRNL AUTH 2 A.GIBSON,C.R.HOPKINS,P.R.EVANS,H.T.MCMAHON JRNL TITL SIMULTANEOUS BINDING OF PTDINS(4,5)P2 AND CLATHRIN BY AP180 JRNL TITL 2 IN THE NUCLEATION OF CLATHRIN LATTICES ON MEMBRANES JRNL REF SCIENCE V. 291 1051 2001 JRNL REFN ISSN 0036-8075 JRNL PMID 11161218 JRNL DOI 10.1126/SCIENCE.291.5506.1051 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 65.94 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 24692 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1322 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 REFLECTION IN BIN (WORKING SET) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE SET COUNT : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2114 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 128 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 43.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.54000 REMARK 3 B22 (A**2) : 1.54000 REMARK 3 B33 (A**2) : -3.07000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.152 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.142 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.195 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.171 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1HFA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-NOV-00. REMARK 100 THE DEPOSITION ID IS D_1290005607. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-MAR-00 REMARK 200 TEMPERATURE (KELVIN) : 293.0 REMARK 200 PH : 7.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX9.6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.87 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26075 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 66.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 6.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.10300 REMARK 200 R SYM (I) : 0.10400 REMARK 200 FOR THE DATA SET : 14.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 1.15300 REMARK 200 R SYM FOR SHELL (I) : 1.15300 REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 1HF8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES, PH 7.5, 12% PEG 8K, 8% REMARK 280 ETHYLENE GLYCOL, CRYSTALS SOAKED IN 1MM LIGAND FOR 1 HOUR, PH REMARK 280 7.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.13250 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 38.86250 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 38.86250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 30.56625 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 38.86250 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 38.86250 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 91.69875 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 38.86250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 38.86250 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 30.56625 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 38.86250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 38.86250 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 91.69875 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 61.13250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL_UNIT: MONOMERTHIS DIMERIC ARRANGEMENT REMARK 300 IS THE RESULT OF TIGHT CRYSTALPACKING. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 2220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 77.72500 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 77.72500 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 61.13250 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLY A 3 REMARK 465 GLN A 4 REMARK 465 SER A 5 REMARK 465 LEU A 6 REMARK 465 THR A 7 REMARK 465 ASP A 8 REMARK 465 ARG A 9 REMARK 465 ILE A 10 REMARK 465 THR A 11 REMARK 465 ALA A 12 REMARK 465 ALA A 13 REMARK 465 GLN A 14 REMARK 465 HIS A 15 REMARK 465 SER A 16 REMARK 465 VAL A 17 REMARK 465 THR A 18 REMARK 465 LEU A 282 REMARK 465 ALA A 283 REMARK 465 SER A 284 REMARK 465 LEU A 285 REMARK 465 GLU A 286 REMARK 465 GLY A 287 REMARK 465 LYS A 288 REMARK 465 LYS A 289 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2118 O HOH A 2120 1.92 REMARK 500 OD1 ASP A 144 OG1 THR A 146 1.97 REMARK 500 NZ LYS A 39 OD2 ASP A 43 2.07 REMARK 500 OE2 GLU A 91 OH TYR A 138 2.08 REMARK 500 O HOH A 2029 O HOH A 2086 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2044 O HOH A 2044 7556 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MET A 52 SD MET A 52 CE 0.406 REMARK 500 MET A 86 SD MET A 86 CE -0.706 REMARK 500 TYR A 96 CD1 TYR A 96 CE1 -0.109 REMARK 500 TYR A 96 CE2 TYR A 96 CD2 -0.099 REMARK 500 TYR A 127 CD1 TYR A 127 CE1 -0.144 REMARK 500 GLU A 133 CB GLU A 133 CG -0.118 REMARK 500 TYR A 211 CD1 TYR A 211 CE1 0.100 REMARK 500 GLU A 255 CD GLU A 255 OE2 -0.080 REMARK 500 VAL A 257 CB VAL A 257 CG2 -0.161 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 86 CG - SD - CE ANGL. DEV. = -12.8 DEGREES REMARK 500 ARG A 129 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ASP A 144 CB - CG - OD2 ANGL. DEV. = 8.5 DEGREES REMARK 500 TYR A 211 CB - CG - CD2 ANGL. DEV. = -5.0 DEGREES REMARK 500 TYR A 211 CB - CG - CD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 224 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP A 260 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ARG A 261 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 SER A 268 N - CA - C ANGL. DEV. = -18.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 103 -120.64 -118.52 REMARK 500 ALA A 152 -24.43 -143.36 REMARK 500 VAL A 155 -79.26 3.93 REMARK 500 CYS A 230 -1.43 -45.42 REMARK 500 SER A 268 77.23 -154.42 REMARK 500 GLN A 269 105.58 -173.71 REMARK 500 ALA A 270 13.31 86.27 REMARK 500 SER A 273 25.35 -64.76 REMARK 500 LEU A 274 7.74 -56.67 REMARK 500 LEU A 275 56.96 -102.31 REMARK 500 ALA A 277 2.46 -69.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PIO A 300 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PIO A 300 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1HF8 RELATED DB: PDB REMARK 900 CALM-N N-TERMINAL DOMAIN OF CLATHRIN ASSEMBLY LYMPHOID MYELOID REMARK 900 LEUKAEMIA PROTEIN DBREF 1HFA A 1 289 UNP O55011 O55011 1 289 SEQRES 1 A 289 MET SER GLY GLN SER LEU THR ASP ARG ILE THR ALA ALA SEQRES 2 A 289 GLN HIS SER VAL THR GLY SER ALA VAL SER LYS THR VAL SEQRES 3 A 289 CYS LYS ALA THR THR HIS GLU ILE MET GLY PRO LYS LYS SEQRES 4 A 289 LYS HIS LEU ASP TYR LEU ILE GLN CYS THR ASN GLU MET SEQRES 5 A 289 ASN VAL ASN ILE PRO GLN LEU ALA ASP SER LEU PHE GLU SEQRES 6 A 289 ARG THR THR ASN SER SER TRP VAL VAL VAL PHE LYS SER SEQRES 7 A 289 LEU ILE THR THR HIS HIS LEU MET VAL TYR GLY ASN GLU SEQRES 8 A 289 ARG PHE ILE GLN TYR LEU ALA SER ARG ASN THR LEU PHE SEQRES 9 A 289 ASN LEU SER ASN PHE LEU ASP LYS SER GLY LEU GLN GLY SEQRES 10 A 289 TYR ASP MET SER THR PHE ILE ARG ARG TYR SER ARG TYR SEQRES 11 A 289 LEU ASN GLU LYS ALA VAL SER TYR ARG GLN VAL ALA PHE SEQRES 12 A 289 ASP PHE THR LYS VAL LYS ARG GLY ALA ASP GLY VAL MET SEQRES 13 A 289 ARG THR MET ASN THR GLU LYS LEU LEU LYS THR VAL PRO SEQRES 14 A 289 ILE ILE GLN ASN GLN MET ASP ALA LEU LEU ASP PHE ASN SEQRES 15 A 289 VAL ASN SER ASN GLU LEU THR ASN GLY VAL ILE ASN ALA SEQRES 16 A 289 ALA PHE MET LEU LEU PHE LYS ASP ALA ILE ARG LEU PHE SEQRES 17 A 289 ALA ALA TYR ASN GLU GLY ILE ILE ASN LEU LEU GLU LYS SEQRES 18 A 289 TYR PHE ASP MET LYS LYS ASN GLN CYS LYS GLU GLY LEU SEQRES 19 A 289 ASP ILE TYR LYS LYS PHE LEU THR ARG MET THR ARG ILE SEQRES 20 A 289 SER GLU PHE LEU LYS VAL ALA GLU GLN VAL GLY ILE ASP SEQRES 21 A 289 ARG GLY ASP ILE PRO ASP LEU SER GLN ALA PRO SER SER SEQRES 22 A 289 LEU LEU ASP ALA LEU GLU GLN HIS LEU ALA SER LEU GLU SEQRES 23 A 289 GLY LYS LYS HET PIO A 300 24 HETNAM PIO [(2R)-2-OCTANOYLOXY-3-[OXIDANYL-[(1R,2R,3S,4R,5R,6S)-2, HETNAM 2 PIO 3,6-TRIS(OXIDANYL)-4,5-DIPHOSPHONOOXY-CYCLOHEXYL]OXY- HETNAM 3 PIO PHOSPHORYL]OXY-PROPYL] OCTANOATE HETSYN PIO DIOCTANOYL L-ALPHA-PHOSPHATIDYL-D-MYO-INOSITOL 4,5- HETSYN 2 PIO DIPHOSPHATE FORMUL 2 PIO C25 H49 O19 P3 FORMUL 3 HOH *128(H2 O) HELIX 1 1 GLY A 19 THR A 30 1 12 HELIX 2 2 LYS A 38 GLU A 51 1 14 HELIX 3 3 ASN A 55 THR A 67 1 13 HELIX 4 4 SER A 71 GLY A 89 1 19 HELIX 5 5 ASN A 90 ARG A 100 1 11 HELIX 6 6 GLY A 114 ALA A 142 1 29 HELIX 7 7 ASN A 160 ASP A 180 1 21 HELIX 8 8 ASN A 184 LEU A 188 5 5 HELIX 9 9 ASN A 190 TYR A 222 1 33 HELIX 10 10 ASN A 228 GLY A 258 1 31 HELIX 11 11 ASP A 260 ILE A 264 5 5 SITE 1 AC1 3 LYS A 38 LYS A 40 HIS A 41 CRYST1 77.725 77.725 122.265 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012866 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012866 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008179 0.00000