data_1HHC
#
_entry.id 1HHC
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.382
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 1HHC pdb_00001hhc 10.2210/pdb1hhc/pdb
PDBE EBI-5724 ? ?
WWPDB D_1290005724 ? ?
#
loop_
_pdbx_database_related.db_name
_pdbx_database_related.db_id
_pdbx_database_related.content_type
_pdbx_database_related.details
PDB 1HH3 unspecified 'CRYSTAL STRUCTURE OF DECAPLANIN - SPACE GROUP P21'
PDB 1HHA unspecified 'CRYSTAL STRUCTURE OF DECAPLANIN - SPACE GROUP P6122'
PDB 1HHF unspecified 'CRYSTAL STRUCTURE OF DECAPLANIN - SPACE GROUP P6122, SECOND FORM'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 1HHC
_pdbx_database_status.deposit_site PDBE
_pdbx_database_status.process_site PDBE
_pdbx_database_status.SG_entry .
_pdbx_database_status.recvd_initial_deposition_date 2000-12-22
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.status_code_nmr_data ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
_audit_author.identifier_ORCID
'Lehmann, C.' 1 ?
'Vertessy, L.' 2 ?
'Sheldrick, G.M.' 3 ?
'Dauter, Z.' 4 ?
'Dauter, M.' 5 ?
#
_citation.id primary
_citation.title 'Structures of Four Crystal Forms of Decaplanin'
_citation.journal_abbrev Helv.Chim.Acta
_citation.journal_volume 86
_citation.page_first 1478
_citation.page_last ?
_citation.year 2003
_citation.journal_id_ASTM HCACAV
_citation.country SZ
_citation.journal_id_ISSN 0018-019X
_citation.journal_id_CSD 0010
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed ?
_citation.pdbx_database_id_DOI 10.1002/HLCA.200390131
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Lehmann, C.' 1 ?
primary 'Debreczeni, J.E.' 2 ?
primary 'Bunkoczi, G.' 3 ?
primary 'Dauter, M.' 4 ?
primary 'Dauter, Z.' 5 ?
primary 'Vertesy, L.' 6 ?
primary 'Sheldrick, G.M.' 7 ?
#
_cell.entry_id 1HHC
_cell.length_a 28.945
_cell.length_b 31.908
_cell.length_c 34.735
_cell.angle_alpha 90.00
_cell.angle_beta 109.87
_cell.angle_gamma 90.00
_cell.Z_PDB 8
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 1HHC
_symmetry.space_group_name_H-M 'P 1 21 1'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 4
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer nat DECAPLANIN 1115.532 4 ? ? ? ?
2 branched man 'alpha-L-rhamnopyranose-(1-2)-beta-D-glucopyranose' 326.297 4 ? ? ? ?
3 non-polymer man 4-epi-vancosamine 161.199 4 ? ? ? ?
4 non-polymer syn 'CITRIC ACID' 192.124 3 ? ? ? ?
5 water nat water 18.015 163 ? ? ? ?
#
_entity_name_com.entity_id 1
_entity_name_com.name M86-1410
#
_entity_poly.entity_id 1
_entity_poly.type 'polypeptide(L)'
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer yes
_entity_poly.pdbx_seq_one_letter_code '(MLU)(OMZ)N(GHP)(GHP)(OMX)(3FG)'
_entity_poly.pdbx_seq_one_letter_code_can XXNGGYX
_entity_poly.pdbx_strand_id A,B,C,D
_entity_poly.pdbx_target_identifier ?
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 MLU n
1 2 OMZ n
1 3 ASN n
1 4 GHP n
1 5 GHP n
1 6 OMX n
1 7 3FG n
#
_entity_src_nat.entity_id 1
_entity_src_nat.pdbx_src_id 1
_entity_src_nat.pdbx_alt_source_flag sample
_entity_src_nat.pdbx_beg_seq_num ?
_entity_src_nat.pdbx_end_seq_num ?
_entity_src_nat.common_name ?
_entity_src_nat.pdbx_organism_scientific 'UNCULTURED ACTINOMYCETE'
_entity_src_nat.pdbx_ncbi_taxonomy_id 100235
_entity_src_nat.genus ?
_entity_src_nat.species ?
_entity_src_nat.strain 'DSM 4763'
_entity_src_nat.tissue ?
_entity_src_nat.tissue_fraction ?
_entity_src_nat.pdbx_secretion ?
_entity_src_nat.pdbx_fragment ?
_entity_src_nat.pdbx_variant ?
_entity_src_nat.pdbx_cell_line ?
_entity_src_nat.pdbx_atcc ?
_entity_src_nat.pdbx_cellular_location ?
_entity_src_nat.pdbx_organ ?
_entity_src_nat.pdbx_organelle ?
_entity_src_nat.pdbx_cell ?
_entity_src_nat.pdbx_plasmid_name ?
_entity_src_nat.pdbx_plasmid_details ?
_entity_src_nat.details 'CULTURE HIL Y-86, 36910'
#
_struct_ref.id 1
_struct_ref.db_name NOR
_struct_ref.db_code NOR00692
_struct_ref.entity_id 1
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_align_begin ?
_struct_ref.pdbx_db_accession NOR00692
_struct_ref.pdbx_db_isoform ?
#
loop_
_struct_ref_seq.align_id
_struct_ref_seq.ref_id
_struct_ref_seq.pdbx_PDB_id_code
_struct_ref_seq.pdbx_strand_id
_struct_ref_seq.seq_align_beg
_struct_ref_seq.pdbx_seq_align_beg_ins_code
_struct_ref_seq.seq_align_end
_struct_ref_seq.pdbx_seq_align_end_ins_code
_struct_ref_seq.pdbx_db_accession
_struct_ref_seq.db_align_beg
_struct_ref_seq.pdbx_db_align_beg_ins_code
_struct_ref_seq.db_align_end
_struct_ref_seq.pdbx_db_align_end_ins_code
_struct_ref_seq.pdbx_auth_seq_align_beg
_struct_ref_seq.pdbx_auth_seq_align_end
1 1 1HHC A 1 ? 7 ? NOR00692 1 ? 7 ? 1 7
2 1 1HHC B 1 ? 7 ? NOR00692 1 ? 7 ? 1 7
3 1 1HHC C 1 ? 7 ? NOR00692 1 ? 7 ? 1 7
4 1 1HHC D 1 ? 7 ? NOR00692 1 ? 7 ? 1 7
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
3FG 'L-peptide linking' . '(2S)-amino(3,5-dihydroxyphenyl)ethanoic acid' ? 'C8 H9 N O4' 183.161
ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118
BGC 'D-saccharide, beta linking' . beta-D-glucopyranose 'beta-D-glucose; D-glucose; glucose'
'C6 H12 O6' 180.156
CIT non-polymer . 'CITRIC ACID' ? 'C6 H8 O7' 192.124
ERE 'L-saccharide, alpha linking' . 4-epi-vancosamine
'(1R,3S,4R,5S)-3-amino-2,3,6-trideoxy-3-methyl-alpha-L-arabino-hexopyranose' 'C7 H15 N O3' 161.199
GHP 'D-peptide linking' . '(2R)-amino(4-hydroxyphenyl)ethanoic acid' ? 'C8 H9 N O3' 167.162
HOH non-polymer . WATER ? 'H2 O' 18.015
MLU 'D-peptide linking' . N-methyl-D-leucine ? 'C7 H15 N O2' 145.199
OMX 'L-peptide linking' n '(betaR)-beta-hydroxy-L-Tyrosine' ? 'C9 H11 N O4' 197.188
OMZ 'D-peptide linking' . '(betaR)-3-CHLORO-BETA-HYDROXY-D-TYROSINE' ? 'C9 H10 Cl N O4' 231.633
RAM 'L-saccharide, alpha linking' . alpha-L-rhamnopyranose
'alpha-L-rhamnose; 6-deoxy-alpha-L-mannopyranose; L-rhamnose; rhamnose' 'C6 H12 O5' 164.156
#
_exptl.entry_id 1HHC
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number 1
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_Matthews 2.37
_exptl_crystal.density_percent_sol 48.11
_exptl_crystal.description ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method ?
_exptl_crystal_grow.temp ?
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pH 7.00
_exptl_crystal_grow.pdbx_pH_range ?
_exptl_crystal_grow.pdbx_details '1M NA3CIT PH=7.0, PH 7.00'
#
_diffrn.id 1
_diffrn.ambient_temp 133.0
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector CCD
_diffrn_detector.type SIEMENS
_diffrn_detector.pdbx_collection_date 1998-12-15
_diffrn_detector.details ?
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.monochromator GRAPHITE
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 0.71073
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source 'SEALED TUBE'
_diffrn_source.type SIEMENS-STOE-HUBER
_diffrn_source.pdbx_synchrotron_site ?
_diffrn_source.pdbx_synchrotron_beamline ?
_diffrn_source.pdbx_wavelength 0.71073
_diffrn_source.pdbx_wavelength_list ?
#
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
_reflns.entry_id 1HHC
_reflns.observed_criterion_sigma_I ?
_reflns.observed_criterion_sigma_F ?
_reflns.d_resolution_low 18.080
_reflns.d_resolution_high 1.130
_reflns.number_obs 20450
_reflns.number_all ?
_reflns.percent_possible_obs 96.8
_reflns.pdbx_Rmerge_I_obs 0.09810
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_sigmaI 12.3400
_reflns.B_iso_Wilson_estimate ?
_reflns.pdbx_redundancy 7.140
_reflns.pdbx_CC_half ?
_reflns.pdbx_Rpim_I_all ?
_reflns.pdbx_Rrim_I_all ?
#
_reflns_shell.pdbx_diffrn_id 1
_reflns_shell.pdbx_ordinal 1
_reflns_shell.d_res_high 1.13
_reflns_shell.d_res_low 1.25
_reflns_shell.percent_possible_all 88.2
_reflns_shell.Rmerge_I_obs 0.30200
_reflns_shell.pdbx_Rsym_value ?
_reflns_shell.meanI_over_sigI_obs 4.670
_reflns_shell.pdbx_redundancy 4.70
_reflns_shell.number_measured_obs ?
_reflns_shell.number_unique_all ?
_reflns_shell.number_unique_obs ?
_reflns_shell.pdbx_CC_half ?
_reflns_shell.pdbx_Rpim_I_all ?
_reflns_shell.pdbx_Rrim_I_all ?
#
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.entry_id 1HHC
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.ls_number_reflns_obs ?
_refine.ls_number_reflns_all 38893
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F 0.0
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low 18.08
_refine.ls_d_res_high 1.13
_refine.ls_percent_reflns_obs 96.8
_refine.ls_R_factor_obs 0.2221
_refine.ls_R_factor_all 0.2242
_refine.ls_R_factor_R_work ?
_refine.ls_R_factor_R_free 0.2642
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free 4.9
_refine.ls_number_reflns_R_free 1901
_refine.ls_number_parameters 5685
_refine.ls_number_restraints 1007
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.B_iso_mean ?
_refine.aniso_B[1][1] ?
_refine.aniso_B[2][2] ?
_refine.aniso_B[3][3] ?
_refine.aniso_B[1][2] ?
_refine.aniso_B[1][3] ?
_refine.aniso_B[2][3] ?
_refine.solvent_model_details 'MOEWS & KRETSINGER, J.MOL.BIOL.91(1973)201-228'
_refine.solvent_model_param_ksol ?
_refine.solvent_model_param_bsol ?
_refine.pdbx_solvent_vdw_probe_radii ?
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii ?
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.details ?
_refine.pdbx_starting_model 'PDB ENTRY 1HH3'
_refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT'
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_stereochemistry_target_values 'ENGH AND HUBER'
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details SHELLS
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.overall_SU_ML ?
_refine.pdbx_overall_phase_error ?
_refine.overall_SU_B ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_analyze.entry_id 1HHC
_refine_analyze.Luzzati_coordinate_error_obs ?
_refine_analyze.Luzzati_sigma_a_obs ?
_refine_analyze.Luzzati_d_res_low_obs ?
_refine_analyze.Luzzati_coordinate_error_free ?
_refine_analyze.Luzzati_sigma_a_free ?
_refine_analyze.Luzzati_d_res_low_free ?
_refine_analyze.number_disordered_residues 0
_refine_analyze.occupancy_sum_hydrogen ?
_refine_analyze.occupancy_sum_non_hydrogen 623.50
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 313
_refine_hist.pdbx_number_atoms_nucleic_acid 0
_refine_hist.pdbx_number_atoms_ligand 153
_refine_hist.number_atoms_solvent 163
_refine_hist.number_atoms_total 629
_refine_hist.d_res_high 1.13
_refine_hist.d_res_low 18.08
#
loop_
_refine_ls_restr.type
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.number
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.pdbx_restraint_function
s_bond_d 0.042 ? ? ? 'X-RAY DIFFRACTION' ?
s_angle_d 0.041 ? ? ? 'X-RAY DIFFRACTION' ?
s_similar_dist ? ? ? ? 'X-RAY DIFFRACTION' ?
s_from_restr_planes 0.076 ? ? ? 'X-RAY DIFFRACTION' ?
s_zero_chiral_vol 0.096 ? ? ? 'X-RAY DIFFRACTION' ?
s_non_zero_chiral_vol ? ? ? ? 'X-RAY DIFFRACTION' ?
s_anti_bump_dis_restr 0.146 ? ? ? 'X-RAY DIFFRACTION' ?
s_rigid_bond_adp_cmpnt 0.014 ? ? ? 'X-RAY DIFFRACTION' ?
s_similar_adp_cmpnt 0.011 ? ? ? 'X-RAY DIFFRACTION' ?
s_approx_iso_adps 0.084 ? ? ? 'X-RAY DIFFRACTION' ?
#
_pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_pdbx_refine.entry_id 1HHC
_pdbx_refine.R_factor_all_no_cutoff 0.2242
_pdbx_refine.R_factor_obs_no_cutoff 0.2221
_pdbx_refine.free_R_factor_no_cutoff 0.2642
_pdbx_refine.free_R_error_no_cutoff ?
_pdbx_refine.free_R_val_test_set_size_perc_no_cutoff 4.9
_pdbx_refine.free_R_val_test_set_ct_no_cutoff 1901
_pdbx_refine.R_factor_all_4sig_cutoff 0.1849
_pdbx_refine.R_factor_obs_4sig_cutoff 0.1828
_pdbx_refine.free_R_factor_4sig_cutoff 0.2255
_pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff 4.9
_pdbx_refine.free_R_val_test_set_ct_4sig_cutoff 1425
_pdbx_refine.number_reflns_obs_4sig_cutoff 29332
#
loop_
_struct_ncs_oper.id
_struct_ncs_oper.code
_struct_ncs_oper.details
_struct_ncs_oper.matrix[1][1]
_struct_ncs_oper.matrix[1][2]
_struct_ncs_oper.matrix[1][3]
_struct_ncs_oper.matrix[2][1]
_struct_ncs_oper.matrix[2][2]
_struct_ncs_oper.matrix[2][3]
_struct_ncs_oper.matrix[3][1]
_struct_ncs_oper.matrix[3][2]
_struct_ncs_oper.matrix[3][3]
_struct_ncs_oper.vector[1]
_struct_ncs_oper.vector[2]
_struct_ncs_oper.vector[3]
1 given ? -0.966650 -0.178880 -0.183300 -0.140040 -0.230070 0.963050 -0.214440 0.956590 0.197350 0.07411 -26.26217 20.64583
2 given ? 0.761130 0.004130 0.648580 -0.035650 -0.998200 0.048190 0.647610 -0.059800 -0.759620 -14.32841 12.11362 40.40091
3 given ? -0.851290 0.246660 -0.463110 0.502150 0.127030 -0.855400 -0.152170 -0.960740 -0.232000 3.44473 12.69141 43.50352
#
_struct.entry_id 1HHC
_struct.title 'Crystal structure of Decaplanin - space group P21, second form'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 1HHC
_struct_keywords.pdbx_keywords ANTIBIOTIC
_struct_keywords.text 'ANTIBIOTIC, GLYCOPEPTIDE'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 1 ?
C N N 1 ?
D N N 1 ?
E N N 2 ?
F N N 2 ?
G N N 2 ?
H N N 2 ?
I N N 3 ?
J N N 4 ?
K N N 3 ?
L N N 3 ?
M N N 4 ?
N N N 3 ?
O N N 4 ?
P N N 5 ?
Q N N 5 ?
R N N 5 ?
S N N 5 ?
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
covale1 covale both ? A MLU 1 C ? ? ? 1_555 A OMZ 2 N ? ? A MLU 1 A OMZ 2 1_555 ? ? ? ? ? ? ? 1.336 ? ?
covale2 covale both ? A OMZ 2 C ? ? ? 1_555 A ASN 3 N ? ? A OMZ 2 A ASN 3 1_555 ? ? ? ? ? ? ? 1.340 ? ?
covale3 covale none ? A OMZ 2 OH ? ? ? 1_555 A GHP 4 C5 ? ? A OMZ 2 A GHP 4 1_555 ? ? ? ? ? ? ? 1.387 ? ?
covale4 covale both ? A ASN 3 C ? ? ? 1_555 A GHP 4 N ? ? A ASN 3 A GHP 4 1_555 ? ? ? ? ? ? ? 1.369 ? ?
covale5 covale both ? A GHP 4 C ? ? ? 1_555 A GHP 5 N ? ? A GHP 4 A GHP 5 1_555 ? ? ? ? ? ? ? 1.333 ? ?
covale6 covale none ? A GHP 4 C3 ? ? ? 1_555 A OMX 6 OH ? ? A GHP 4 A OMX 6 1_555 ? ? ? ? ? ? ? 1.420 ? ?
covale7 covale one ? A GHP 4 O4 ? ? ? 1_555 E BGC . C1 ? ? A GHP 4 E BGC 1 1_555 ? ? ? ? ? ? ? 1.443 ? ?
covale8 covale both ? A GHP 5 C ? ? ? 1_555 A OMX 6 N ? ? A GHP 5 A OMX 6 1_555 ? ? ? ? ? ? ? 1.323 ? ?
covale9 covale one ? A GHP 5 C3 ? ? ? 1_555 A 3FG 7 CG1 ? ? A GHP 5 A 3FG 7 1_555 ? ? ? ? ? ? ? 1.486 ? ?
covale10 covale both ? A OMX 6 C ? ? ? 1_555 A 3FG 7 N ? ? A OMX 6 A 3FG 7 1_555 ? ? ? ? ? ? ? 1.355 ? ?
covale11 covale one ? A OMX 6 OC ? ? ? 1_555 I ERE . C1 ? ? A OMX 6 A ERE 8 1_555 ? ? ? ? ? ? ? 1.420 ? ?
covale12 covale both ? B MLU 1 C ? ? ? 1_555 B OMZ 2 N ? ? B MLU 1 B OMZ 2 1_555 ? ? ? ? ? ? ? 1.355 ? ?
covale13 covale both ? B OMZ 2 C ? ? ? 1_555 B ASN 3 N ? ? B OMZ 2 B ASN 3 1_555 ? ? ? ? ? ? ? 1.281 ? ?
covale14 covale none ? B OMZ 2 OH ? ? ? 1_555 B GHP 4 C5 ? ? B OMZ 2 B GHP 4 1_555 ? ? ? ? ? ? ? 1.393 ? ?
covale15 covale both ? B ASN 3 C ? ? ? 1_555 B GHP 4 N ? ? B ASN 3 B GHP 4 1_555 ? ? ? ? ? ? ? 1.330 ? ?
covale16 covale both ? B GHP 4 C ? ? ? 1_555 B GHP 5 N ? ? B GHP 4 B GHP 5 1_555 ? ? ? ? ? ? ? 1.358 ? ?
covale17 covale none ? B GHP 4 C3 ? ? ? 1_555 B OMX 6 OH ? ? B GHP 4 B OMX 6 1_555 ? ? ? ? ? ? ? 1.376 ? ?
covale18 covale one ? B GHP 4 O4 ? ? ? 1_555 F BGC . C1 ? ? B GHP 4 F BGC 1 1_555 ? ? ? ? ? ? ? 1.410 ? ?
covale19 covale both ? B GHP 5 C ? ? ? 1_555 B OMX 6 N ? ? B GHP 5 B OMX 6 1_555 ? ? ? ? ? ? ? 1.332 ? ?
covale20 covale one ? B GHP 5 C3 ? ? ? 1_555 B 3FG 7 CG1 ? ? B GHP 5 B 3FG 7 1_555 ? ? ? ? ? ? ? 1.480 ? ?
covale21 covale both ? B OMX 6 C ? ? ? 1_555 B 3FG 7 N ? ? B OMX 6 B 3FG 7 1_555 ? ? ? ? ? ? ? 1.362 ? ?
covale22 covale one ? B OMX 6 OC ? ? ? 1_555 K ERE . C1 ? ? B OMX 6 B ERE 8 1_555 ? ? ? ? ? ? ? 1.417 ? ?
covale23 covale both ? C MLU 1 C ? ? ? 1_555 C OMZ 2 N ? ? C MLU 1 C OMZ 2 1_555 ? ? ? ? ? ? ? 1.345 ? ?
covale24 covale both ? C OMZ 2 C ? ? ? 1_555 C ASN 3 N ? ? C OMZ 2 C ASN 3 1_555 ? ? ? ? ? ? ? 1.344 ? ?
covale25 covale none ? C OMZ 2 OH ? ? ? 1_555 C GHP 4 C5 ? ? C OMZ 2 C GHP 4 1_555 ? ? ? ? ? ? ? 1.391 ? ?
covale26 covale both ? C ASN 3 C ? ? ? 1_555 C GHP 4 N ? ? C ASN 3 C GHP 4 1_555 ? ? ? ? ? ? ? 1.326 ? ?
covale27 covale both ? C GHP 4 C ? ? ? 1_555 C GHP 5 N ? ? C GHP 4 C GHP 5 1_555 ? ? ? ? ? ? ? 1.362 ? ?
covale28 covale none ? C GHP 4 C3 ? ? ? 1_555 C OMX 6 OH ? ? C GHP 4 C OMX 6 1_555 ? ? ? ? ? ? ? 1.392 ? ?
covale29 covale one ? C GHP 4 O4 ? ? ? 1_555 G BGC . C1 ? ? C GHP 4 G BGC 1 1_555 ? ? ? ? ? ? ? 1.437 ? ?
covale30 covale both ? C GHP 5 C ? ? ? 1_555 C OMX 6 N ? ? C GHP 5 C OMX 6 1_555 ? ? ? ? ? ? ? 1.312 ? ?
covale31 covale one ? C GHP 5 C3 ? ? ? 1_555 C 3FG 7 CG1 ? ? C GHP 5 C 3FG 7 1_555 ? ? ? ? ? ? ? 1.501 ? ?
covale32 covale both ? C OMX 6 C ? ? ? 1_555 C 3FG 7 N ? ? C OMX 6 C 3FG 7 1_555 ? ? ? ? ? ? ? 1.363 ? ?
covale33 covale one ? C OMX 6 OC ? ? ? 1_555 L ERE . C1 ? ? C OMX 6 C ERE 8 1_555 ? ? ? ? ? ? ? 1.397 ? ?
covale34 covale both ? D MLU 1 C ? ? ? 1_555 D OMZ 2 N ? ? D MLU 1 D OMZ 2 1_555 ? ? ? ? ? ? ? 1.334 ? ?
covale35 covale both ? D OMZ 2 C ? ? ? 1_555 D ASN 3 N ? ? D OMZ 2 D ASN 3 1_555 ? ? ? ? ? ? ? 1.334 ? ?
covale36 covale none ? D OMZ 2 OH ? ? ? 1_555 D GHP 4 C5 ? ? D OMZ 2 D GHP 4 1_555 ? ? ? ? ? ? ? 1.391 ? ?
covale37 covale both ? D ASN 3 C ? ? ? 1_555 D GHP 4 N ? ? D ASN 3 D GHP 4 1_555 ? ? ? ? ? ? ? 1.346 ? ?
covale38 covale both ? D GHP 4 C ? ? ? 1_555 D GHP 5 N ? ? D GHP 4 D GHP 5 1_555 ? ? ? ? ? ? ? 1.328 ? ?
covale39 covale none ? D GHP 4 C3 ? ? ? 1_555 D OMX 6 OH ? ? D GHP 4 D OMX 6 1_555 ? ? ? ? ? ? ? 1.397 ? ?
covale40 covale one ? D GHP 4 O4 ? ? ? 1_555 H BGC . C1 ? ? D GHP 4 H BGC 1 1_555 ? ? ? ? ? ? ? 1.395 ? ?
covale41 covale both ? D GHP 5 C ? ? ? 1_555 D OMX 6 N ? ? D GHP 5 D OMX 6 1_555 ? ? ? ? ? ? ? 1.325 ? ?
covale42 covale one ? D GHP 5 C3 ? ? ? 1_555 D 3FG 7 CG1 ? ? D GHP 5 D 3FG 7 1_555 ? ? ? ? ? ? ? 1.504 ? ?
covale43 covale both ? D OMX 6 C ? ? ? 1_555 D 3FG 7 N ? ? D OMX 6 D 3FG 7 1_555 ? ? ? ? ? ? ? 1.352 ? ?
covale44 covale one ? D OMX 6 OC ? ? ? 1_555 N ERE . C1 ? ? D OMX 6 D ERE 8 1_555 ? ? ? ? ? ? ? 1.410 ? ?
covale45 covale both ? E BGC . O2 ? ? ? 1_555 E RAM . C1 ? ? E BGC 1 E RAM 2 1_555 ? ? ? ? ? ? ? 1.423 ? ?
covale46 covale both ? F BGC . O2 ? ? ? 1_555 F RAM . C1 ? ? F BGC 1 F RAM 2 1_555 ? ? ? ? ? ? ? 1.412 ? ?
covale47 covale both ? G BGC . O2 ? ? ? 1_555 G RAM . C1 ? ? G BGC 1 G RAM 2 1_555 ? ? ? ? ? ? ? 1.412 ? ?
covale48 covale both ? H BGC . O2 ? ? ? 1_555 H RAM . C1 ? ? H BGC 1 H RAM 2 1_555 ? ? ? ? ? ? ? 1.405 ? ?
#
_struct_conn_type.id covale
_struct_conn_type.criteria ?
_struct_conn_type.reference ?
#
loop_
_struct_mon_prot_cis.pdbx_id
_struct_mon_prot_cis.label_comp_id
_struct_mon_prot_cis.label_seq_id
_struct_mon_prot_cis.label_asym_id
_struct_mon_prot_cis.label_alt_id
_struct_mon_prot_cis.pdbx_PDB_ins_code
_struct_mon_prot_cis.auth_comp_id
_struct_mon_prot_cis.auth_seq_id
_struct_mon_prot_cis.auth_asym_id
_struct_mon_prot_cis.pdbx_label_comp_id_2
_struct_mon_prot_cis.pdbx_label_seq_id_2
_struct_mon_prot_cis.pdbx_label_asym_id_2
_struct_mon_prot_cis.pdbx_PDB_ins_code_2
_struct_mon_prot_cis.pdbx_auth_comp_id_2
_struct_mon_prot_cis.pdbx_auth_seq_id_2
_struct_mon_prot_cis.pdbx_auth_asym_id_2
_struct_mon_prot_cis.pdbx_PDB_model_num
_struct_mon_prot_cis.pdbx_omega_angle
1 GHP 5 A . ? GHP 5 A OMX 6 A ? OMX 6 A 1 6.02
2 GHP 5 B . ? GHP 5 B OMX 6 B ? OMX 6 B 1 10.01
3 GHP 5 C . ? GHP 5 C OMX 6 C ? OMX 6 C 1 7.39
4 GHP 5 D . ? GHP 5 D OMX 6 D ? OMX 6 D 1 8.34
#
_database_PDB_matrix.entry_id 1HHC
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_atom_sites.entry_id 1HHC
_atom_sites.fract_transf_matrix[1][1] 0.034548
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.012486
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.031340
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.030612
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
CL
N
O
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 MLU 1 1 1 MLU MLU A . n
A 1 2 OMZ 2 2 2 OMZ OMZ A . n
A 1 3 ASN 3 3 3 ASN ASN A . n
A 1 4 GHP 4 4 4 GHP GHP A . n
A 1 5 GHP 5 5 5 GHP GHP A . n
A 1 6 OMX 6 6 6 OMX OMX A . n
A 1 7 3FG 7 7 7 3FG 3FG A . n
B 1 1 MLU 1 1 1 MLU MLU B . n
B 1 2 OMZ 2 2 2 OMZ OMZ B . n
B 1 3 ASN 3 3 3 ASN ASN B . n
B 1 4 GHP 4 4 4 GHP GHP B . n
B 1 5 GHP 5 5 5 GHP GHP B . n
B 1 6 OMX 6 6 6 OMX OMX B . n
B 1 7 3FG 7 7 7 3FG 3FG B . n
C 1 1 MLU 1 1 1 MLU MLU C . n
C 1 2 OMZ 2 2 2 OMZ OMZ C . n
C 1 3 ASN 3 3 3 ASN ASN C . n
C 1 4 GHP 4 4 4 GHP GHP C . n
C 1 5 GHP 5 5 5 GHP GHP C . n
C 1 6 OMX 6 6 6 OMX OMX C . n
C 1 7 3FG 7 7 7 3FG 3FG C . n
D 1 1 MLU 1 1 1 MLU MLU D . n
D 1 2 OMZ 2 2 2 OMZ OMZ D . n
D 1 3 ASN 3 3 3 ASN ASN D . n
D 1 4 GHP 4 4 4 GHP GHP D . n
D 1 5 GHP 5 5 5 GHP GHP D . n
D 1 6 OMX 6 6 6 OMX OMX D . n
D 1 7 3FG 7 7 7 3FG 3FG D . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 3 ERE 1 8 8 ERE ERE A .
J 4 CIT 1 1002 1002 CIT CIT A .
K 3 ERE 1 8 8 ERE ERE B .
L 3 ERE 1 8 8 ERE ERE C .
M 4 CIT 1 1003 1003 CIT CIT C .
N 3 ERE 1 8 8 ERE ERE D .
O 4 CIT 1 1001 1001 CIT CIT D .
P 5 HOH 1 2001 2001 HOH HOH A .
P 5 HOH 2 2002 2002 HOH HOH A .
P 5 HOH 3 2003 2003 HOH HOH A .
P 5 HOH 4 2004 2004 HOH HOH A .
P 5 HOH 5 2005 2005 HOH HOH A .
P 5 HOH 6 2006 2006 HOH HOH A .
P 5 HOH 7 2007 2007 HOH HOH A .
P 5 HOH 8 2008 2008 HOH HOH A .
P 5 HOH 9 2009 2009 HOH HOH A .
P 5 HOH 10 2010 2010 HOH HOH A .
P 5 HOH 11 2011 2011 HOH HOH A .
P 5 HOH 12 2012 2012 HOH HOH A .
P 5 HOH 13 2013 2013 HOH HOH A .
P 5 HOH 14 2014 2014 HOH HOH A .
P 5 HOH 15 2015 2015 HOH HOH A .
P 5 HOH 16 2016 2016 HOH HOH A .
P 5 HOH 17 2017 2017 HOH HOH A .
P 5 HOH 18 2018 2018 HOH HOH A .
P 5 HOH 19 2019 2019 HOH HOH A .
P 5 HOH 20 2020 2020 HOH HOH A .
P 5 HOH 21 2021 2021 HOH HOH A .
P 5 HOH 22 2022 2022 HOH HOH A .
P 5 HOH 23 2023 2023 HOH HOH A .
P 5 HOH 24 2024 2024 HOH HOH A .
P 5 HOH 25 2025 2025 HOH HOH A .
P 5 HOH 26 2026 2026 HOH HOH A .
P 5 HOH 27 2027 2027 HOH HOH A .
P 5 HOH 28 2028 2028 HOH HOH A .
P 5 HOH 29 2029 2029 HOH HOH A .
P 5 HOH 30 2030 2030 HOH HOH A .
P 5 HOH 31 2031 2031 HOH HOH A .
P 5 HOH 32 2032 2032 HOH HOH A .
P 5 HOH 33 2033 2033 HOH HOH A .
P 5 HOH 34 2034 2034 HOH HOH A .
P 5 HOH 35 2035 2035 HOH HOH A .
P 5 HOH 36 2036 2036 HOH HOH A .
P 5 HOH 37 2037 2037 HOH HOH A .
P 5 HOH 38 2038 2038 HOH HOH A .
P 5 HOH 39 2039 2039 HOH HOH A .
P 5 HOH 40 2040 2040 HOH HOH A .
P 5 HOH 41 2041 2041 HOH HOH A .
Q 5 HOH 1 2001 2001 HOH HOH B .
Q 5 HOH 2 2002 2002 HOH HOH B .
Q 5 HOH 3 2003 2003 HOH HOH B .
Q 5 HOH 4 2004 2004 HOH HOH B .
Q 5 HOH 5 2005 2005 HOH HOH B .
Q 5 HOH 6 2006 2006 HOH HOH B .
Q 5 HOH 7 2007 2007 HOH HOH B .
Q 5 HOH 8 2008 2008 HOH HOH B .
Q 5 HOH 9 2009 2009 HOH HOH B .
Q 5 HOH 10 2010 2010 HOH HOH B .
Q 5 HOH 11 2011 2011 HOH HOH B .
Q 5 HOH 12 2012 2012 HOH HOH B .
Q 5 HOH 13 2013 2013 HOH HOH B .
Q 5 HOH 14 2014 2014 HOH HOH B .
Q 5 HOH 15 2015 2015 HOH HOH B .
Q 5 HOH 16 2016 2016 HOH HOH B .
Q 5 HOH 17 2017 2017 HOH HOH B .
Q 5 HOH 18 2018 2018 HOH HOH B .
Q 5 HOH 19 2019 2019 HOH HOH B .
Q 5 HOH 20 2020 2020 HOH HOH B .
Q 5 HOH 21 2021 2021 HOH HOH B .
Q 5 HOH 22 2022 2022 HOH HOH B .
Q 5 HOH 23 2023 2023 HOH HOH B .
Q 5 HOH 24 2024 2024 HOH HOH B .
Q 5 HOH 25 2025 2025 HOH HOH B .
Q 5 HOH 26 2026 2026 HOH HOH B .
Q 5 HOH 27 2027 2027 HOH HOH B .
Q 5 HOH 28 2028 2028 HOH HOH B .
Q 5 HOH 29 2029 2029 HOH HOH B .
Q 5 HOH 30 2030 2030 HOH HOH B .
Q 5 HOH 31 2031 2031 HOH HOH B .
Q 5 HOH 32 2032 2032 HOH HOH B .
Q 5 HOH 33 2033 2033 HOH HOH B .
Q 5 HOH 34 2034 2034 HOH HOH B .
Q 5 HOH 35 2035 2035 HOH HOH B .
Q 5 HOH 36 2036 2036 HOH HOH B .
Q 5 HOH 37 2037 2037 HOH HOH B .
Q 5 HOH 38 2038 2038 HOH HOH B .
Q 5 HOH 39 2039 2039 HOH HOH B .
Q 5 HOH 40 2040 2040 HOH HOH B .
Q 5 HOH 41 2041 2041 HOH HOH B .
Q 5 HOH 42 2042 2042 HOH HOH B .
R 5 HOH 1 2001 2001 HOH HOH C .
R 5 HOH 2 2002 2002 HOH HOH C .
R 5 HOH 3 2003 2003 HOH HOH C .
R 5 HOH 4 2004 2004 HOH HOH C .
R 5 HOH 5 2005 2005 HOH HOH C .
R 5 HOH 6 2006 2006 HOH HOH C .
R 5 HOH 7 2007 2007 HOH HOH C .
R 5 HOH 8 2008 2008 HOH HOH C .
R 5 HOH 9 2009 2009 HOH HOH C .
R 5 HOH 10 2010 2010 HOH HOH C .
R 5 HOH 11 2011 2011 HOH HOH C .
R 5 HOH 12 2012 2012 HOH HOH C .
R 5 HOH 13 2013 2013 HOH HOH C .
R 5 HOH 14 2014 2014 HOH HOH C .
R 5 HOH 15 2015 2015 HOH HOH C .
R 5 HOH 16 2016 2016 HOH HOH C .
R 5 HOH 17 2017 2017 HOH HOH C .
R 5 HOH 18 2018 2018 HOH HOH C .
R 5 HOH 19 2019 2019 HOH HOH C .
R 5 HOH 20 2020 2020 HOH HOH C .
R 5 HOH 21 2021 2021 HOH HOH C .
R 5 HOH 22 2022 2022 HOH HOH C .
R 5 HOH 23 2023 2023 HOH HOH C .
R 5 HOH 24 2024 2024 HOH HOH C .
R 5 HOH 25 2025 2025 HOH HOH C .
R 5 HOH 26 2026 2026 HOH HOH C .
R 5 HOH 27 2027 2027 HOH HOH C .
R 5 HOH 28 2028 2028 HOH HOH C .
R 5 HOH 29 2029 2029 HOH HOH C .
R 5 HOH 30 2030 2030 HOH HOH C .
R 5 HOH 31 2031 2031 HOH HOH C .
R 5 HOH 32 2032 2032 HOH HOH C .
R 5 HOH 33 2033 2033 HOH HOH C .
R 5 HOH 34 2034 2034 HOH HOH C .
R 5 HOH 35 2035 2035 HOH HOH C .
R 5 HOH 36 2036 2036 HOH HOH C .
R 5 HOH 37 2037 2037 HOH HOH C .
R 5 HOH 38 2038 2038 HOH HOH C .
S 5 HOH 1 2001 2001 HOH HOH D .
S 5 HOH 2 2002 2002 HOH HOH D .
S 5 HOH 3 2003 2003 HOH HOH D .
S 5 HOH 4 2004 2004 HOH HOH D .
S 5 HOH 5 2005 2005 HOH HOH D .
S 5 HOH 6 2006 2006 HOH HOH D .
S 5 HOH 7 2007 2007 HOH HOH D .
S 5 HOH 8 2008 2008 HOH HOH D .
S 5 HOH 9 2009 2009 HOH HOH D .
S 5 HOH 10 2010 2010 HOH HOH D .
S 5 HOH 11 2011 2011 HOH HOH D .
S 5 HOH 12 2012 2012 HOH HOH D .
S 5 HOH 13 2013 2013 HOH HOH D .
S 5 HOH 14 2014 2014 HOH HOH D .
S 5 HOH 15 2015 2015 HOH HOH D .
S 5 HOH 16 2016 2016 HOH HOH D .
S 5 HOH 17 2017 2017 HOH HOH D .
S 5 HOH 18 2018 2018 HOH HOH D .
S 5 HOH 19 2019 2019 HOH HOH D .
S 5 HOH 20 2020 2020 HOH HOH D .
S 5 HOH 21 2021 2021 HOH HOH D .
S 5 HOH 22 2022 2022 HOH HOH D .
S 5 HOH 23 2023 2023 HOH HOH D .
S 5 HOH 24 2024 2024 HOH HOH D .
S 5 HOH 25 2025 2025 HOH HOH D .
S 5 HOH 26 2026 2026 HOH HOH D .
S 5 HOH 27 2027 2027 HOH HOH D .
S 5 HOH 28 2028 2028 HOH HOH D .
S 5 HOH 29 2029 2029 HOH HOH D .
S 5 HOH 30 2030 2030 HOH HOH D .
S 5 HOH 31 2031 2031 HOH HOH D .
S 5 HOH 32 2032 2032 HOH HOH D .
S 5 HOH 33 2033 2033 HOH HOH D .
S 5 HOH 34 2034 2034 HOH HOH D .
S 5 HOH 35 2035 2035 HOH HOH D .
S 5 HOH 36 2036 2036 HOH HOH D .
S 5 HOH 37 2037 2037 HOH HOH D .
S 5 HOH 38 2038 2038 HOH HOH D .
S 5 HOH 39 2039 2039 HOH HOH D .
S 5 HOH 40 2040 2040 HOH HOH D .
S 5 HOH 41 2041 2041 HOH HOH D .
S 5 HOH 42 2042 2042 HOH HOH D .
#
_pdbx_molecule_features.prd_id PRD_000207
_pdbx_molecule_features.name Decaplanin
_pdbx_molecule_features.type Glycopeptide
_pdbx_molecule_features.class Antibiotic
_pdbx_molecule_features.details
;DECAPLANIN IS A TRICYCLIC GLYCOPEPTIDE.
THE SCAFFOLD IS A HEPTAPEPTIDE WITH THE
CONFIGURATION D-D-L-D-D-L-L, GLYCOSYLATED
;
#
loop_
_pdbx_molecule.instance_id
_pdbx_molecule.prd_id
_pdbx_molecule.asym_id
1 PRD_000207 A
1 PRD_000207 E
1 PRD_000207 I
2 PRD_000207 B
2 PRD_000207 F
2 PRD_000207 K
3 PRD_000207 C
3 PRD_000207 G
3 PRD_000207 L
4 PRD_000207 D
4 PRD_000207 H
4 PRD_000207 N
#
loop_
_pdbx_struct_mod_residue.id
_pdbx_struct_mod_residue.label_asym_id
_pdbx_struct_mod_residue.label_comp_id
_pdbx_struct_mod_residue.label_seq_id
_pdbx_struct_mod_residue.auth_asym_id
_pdbx_struct_mod_residue.auth_comp_id
_pdbx_struct_mod_residue.auth_seq_id
_pdbx_struct_mod_residue.PDB_ins_code
_pdbx_struct_mod_residue.parent_comp_id
_pdbx_struct_mod_residue.details
1 A OMX 6 A OMX 6 ? TYR '(BETAR)-BETA-HYDROXY-L-TYROSINE'
2 B OMX 6 B OMX 6 ? TYR '(BETAR)-BETA-HYDROXY-L-TYROSINE'
3 C OMX 6 C OMX 6 ? TYR '(BETAR)-BETA-HYDROXY-L-TYROSINE'
4 D OMX 6 D OMX 6 ? TYR '(BETAR)-BETA-HYDROXY-L-TYROSINE'
#
loop_
_pdbx_struct_assembly.id
_pdbx_struct_assembly.details
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
1 author_and_software_defined_assembly PISA dimeric 2
2 author_and_software_defined_assembly PISA dimeric 2
#
loop_
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
_pdbx_struct_assembly_gen.asym_id_list
1 1 A,B,E,F,I,J,K,P,Q
2 1 C,D,G,H,L,M,N,O,R,S
#
_pdbx_struct_oper_list.id 1
_pdbx_struct_oper_list.type 'identity operation'
_pdbx_struct_oper_list.name 1_555
_pdbx_struct_oper_list.symmetry_operation x,y,z
_pdbx_struct_oper_list.matrix[1][1] 1.0000000000
_pdbx_struct_oper_list.matrix[1][2] 0.0000000000
_pdbx_struct_oper_list.matrix[1][3] 0.0000000000
_pdbx_struct_oper_list.vector[1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][2] 1.0000000000
_pdbx_struct_oper_list.matrix[2][3] 0.0000000000
_pdbx_struct_oper_list.vector[2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][1] 0.0000000000
_pdbx_struct_oper_list.matrix[3][2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][3] 1.0000000000
_pdbx_struct_oper_list.vector[3] 0.0000000000
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2005-07-11
2 'Structure model' 1 1 2011-07-13
3 'Structure model' 1 2 2012-07-25
4 'Structure model' 1 3 2012-11-30
5 'Structure model' 1 4 2013-05-01
6 'Structure model' 2 0 2019-04-24
7 'Structure model' 3 0 2020-07-29
8 'Structure model' 3 1 2023-12-13
#
loop_
_pdbx_audit_revision_details.ordinal
_pdbx_audit_revision_details.revision_ordinal
_pdbx_audit_revision_details.data_content_type
_pdbx_audit_revision_details.provider
_pdbx_audit_revision_details.type
_pdbx_audit_revision_details.description
_pdbx_audit_revision_details.details
1 1 'Structure model' repository 'Initial release' ? ?
2 7 'Structure model' repository Remediation 'Carbohydrate remediation' ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Atomic model'
2 2 'Structure model' 'Database references'
3 2 'Structure model' 'Derived calculations'
4 2 'Structure model' 'Structure summary'
5 2 'Structure model' 'Version format compliance'
6 3 'Structure model' 'Atomic model'
7 3 'Structure model' 'Derived calculations'
8 3 'Structure model' 'Non-polymer description'
9 3 'Structure model' Other
10 3 'Structure model' 'Refinement description'
11 4 'Structure model' Other
12 5 'Structure model' 'Non-polymer description'
13 6 'Structure model' 'Data collection'
14 6 'Structure model' 'Derived calculations'
15 6 'Structure model' Other
16 6 'Structure model' 'Polymer sequence'
17 7 'Structure model' Advisory
18 7 'Structure model' 'Atomic model'
19 7 'Structure model' 'Data collection'
20 7 'Structure model' 'Derived calculations'
21 7 'Structure model' Other
22 7 'Structure model' 'Structure summary'
23 8 'Structure model' 'Data collection'
24 8 'Structure model' 'Database references'
25 8 'Structure model' 'Derived calculations'
26 8 'Structure model' 'Refinement description'
27 8 'Structure model' 'Structure summary'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 6 'Structure model' diffrn_source
2 6 'Structure model' entity_poly
3 6 'Structure model' pdbx_database_proc
4 6 'Structure model' pdbx_database_status
5 6 'Structure model' pdbx_seq_map_depositor_info
6 6 'Structure model' struct_biol
7 6 'Structure model' struct_conn
8 7 'Structure model' atom_site
9 7 'Structure model' atom_site_anisotrop
10 7 'Structure model' chem_comp
11 7 'Structure model' entity
12 7 'Structure model' pdbx_branch_scheme
13 7 'Structure model' pdbx_chem_comp_identifier
14 7 'Structure model' pdbx_database_status
15 7 'Structure model' pdbx_entity_branch
16 7 'Structure model' pdbx_entity_branch_descriptor
17 7 'Structure model' pdbx_entity_branch_link
18 7 'Structure model' pdbx_entity_branch_list
19 7 'Structure model' pdbx_entity_nonpoly
20 7 'Structure model' pdbx_molecule
21 7 'Structure model' pdbx_nonpoly_scheme
22 7 'Structure model' pdbx_struct_assembly_gen
23 7 'Structure model' pdbx_unobs_or_zero_occ_atoms
24 7 'Structure model' struct_asym
25 7 'Structure model' struct_conn
26 7 'Structure model' struct_site
27 7 'Structure model' struct_site_gen
28 8 'Structure model' chem_comp
29 8 'Structure model' chem_comp_atom
30 8 'Structure model' chem_comp_bond
31 8 'Structure model' database_2
32 8 'Structure model' pdbx_initial_refinement_model
33 8 'Structure model' struct_conn
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 6 'Structure model' '_diffrn_source.pdbx_synchrotron_y_n'
2 6 'Structure model' '_entity_poly.pdbx_seq_one_letter_code_can'
3 6 'Structure model' '_pdbx_database_status.recvd_author_approval'
4 6 'Structure model' '_pdbx_seq_map_depositor_info.one_letter_code'
5 6 'Structure model' '_struct_conn.pdbx_leaving_atom_flag'
6 7 'Structure model' '_atom_site.B_iso_or_equiv'
7 7 'Structure model' '_atom_site.Cartn_x'
8 7 'Structure model' '_atom_site.Cartn_y'
9 7 'Structure model' '_atom_site.Cartn_z'
10 7 'Structure model' '_atom_site.auth_asym_id'
11 7 'Structure model' '_atom_site.auth_atom_id'
12 7 'Structure model' '_atom_site.auth_comp_id'
13 7 'Structure model' '_atom_site.auth_seq_id'
14 7 'Structure model' '_atom_site.label_asym_id'
15 7 'Structure model' '_atom_site.label_atom_id'
16 7 'Structure model' '_atom_site.label_comp_id'
17 7 'Structure model' '_atom_site.label_entity_id'
18 7 'Structure model' '_atom_site.occupancy'
19 7 'Structure model' '_atom_site.type_symbol'
20 7 'Structure model' '_atom_site_anisotrop.U[1][1]'
21 7 'Structure model' '_atom_site_anisotrop.U[1][2]'
22 7 'Structure model' '_atom_site_anisotrop.U[1][3]'
23 7 'Structure model' '_atom_site_anisotrop.U[2][2]'
24 7 'Structure model' '_atom_site_anisotrop.U[2][3]'
25 7 'Structure model' '_atom_site_anisotrop.U[3][3]'
26 7 'Structure model' '_atom_site_anisotrop.pdbx_auth_asym_id'
27 7 'Structure model' '_atom_site_anisotrop.pdbx_auth_atom_id'
28 7 'Structure model' '_atom_site_anisotrop.pdbx_auth_comp_id'
29 7 'Structure model' '_atom_site_anisotrop.pdbx_auth_seq_id'
30 7 'Structure model' '_atom_site_anisotrop.pdbx_label_asym_id'
31 7 'Structure model' '_atom_site_anisotrop.pdbx_label_atom_id'
32 7 'Structure model' '_atom_site_anisotrop.pdbx_label_comp_id'
33 7 'Structure model' '_atom_site_anisotrop.type_symbol'
34 7 'Structure model' '_chem_comp.name'
35 7 'Structure model' '_chem_comp.type'
36 7 'Structure model' '_pdbx_database_status.status_code_sf'
37 7 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list'
38 7 'Structure model' '_pdbx_unobs_or_zero_occ_atoms.label_asym_id'
39 7 'Structure model' '_struct_conn.pdbx_dist_value'
40 7 'Structure model' '_struct_conn.pdbx_leaving_atom_flag'
41 7 'Structure model' '_struct_conn.ptnr1_auth_asym_id'
42 7 'Structure model' '_struct_conn.ptnr1_auth_comp_id'
43 7 'Structure model' '_struct_conn.ptnr1_auth_seq_id'
44 7 'Structure model' '_struct_conn.ptnr1_label_asym_id'
45 7 'Structure model' '_struct_conn.ptnr1_label_atom_id'
46 7 'Structure model' '_struct_conn.ptnr1_label_comp_id'
47 7 'Structure model' '_struct_conn.ptnr1_label_seq_id'
48 7 'Structure model' '_struct_conn.ptnr2_auth_asym_id'
49 7 'Structure model' '_struct_conn.ptnr2_auth_comp_id'
50 7 'Structure model' '_struct_conn.ptnr2_auth_seq_id'
51 7 'Structure model' '_struct_conn.ptnr2_label_asym_id'
52 7 'Structure model' '_struct_conn.ptnr2_label_atom_id'
53 7 'Structure model' '_struct_conn.ptnr2_label_comp_id'
54 7 'Structure model' '_struct_conn.ptnr2_label_seq_id'
55 8 'Structure model' '_chem_comp.pdbx_synonyms'
56 8 'Structure model' '_database_2.pdbx_DOI'
57 8 'Structure model' '_database_2.pdbx_database_accession'
58 8 'Structure model' '_struct_conn.pdbx_leaving_atom_flag'
#
loop_
_software.name
_software.classification
_software.version
_software.citation_id
_software.pdbx_ordinal
_software.date
_software.type
_software.location
_software.language
SHELXL-97 refinement . ? 1 ? ? ? ?
SAINT 'data reduction' . ? 2 ? ? ? ?
SADABS 'data scaling' . ? 3 ? ? ? ?
EPMR phasing . ? 4 ? ? ? ?
#
_pdbx_entry_details.entry_id 1HHC
_pdbx_entry_details.compound_details
;DECAPLANIN IS A TRICYCLIC GLYCOPEPTIDE.
HERE, DECAPLSNIN IS REPRESENTED BY GROUPING TOGETGHER THE
SEQUENCE (SEQRES) AND THE THREE LIGANDS (HET) BGC, ERE AND RAM.
GROUP: 1
NAME: DECAPLANIN
CHAIN: A, B, C, D
COMPONENT_1: PEPTIDE LIKE SEQUENCE RESIDUES 1 TO 7
COMPONENT_2: SUGAR RESIDUES 8, 9 AND 10
DESCRIPTION: DECAPLANIN IS A TRICYCLIC GLYCOPEPTIDE.
THE SCAFFOLD IS A HEPTAPEPTIDE WITH THE
CONFIGURATION D-D-L-D-D-L-L, GLYCOSYLATED
BY A MONOSACCHARIDE AND A DISACCHARIDE
;
_pdbx_entry_details.source_details ?
_pdbx_entry_details.nonpolymer_details ?
_pdbx_entry_details.sequence_details ?
_pdbx_entry_details.has_ligand_of_interest ?
#
_pdbx_validate_rmsd_angle.id 1
_pdbx_validate_rmsd_angle.PDB_model_num 1
_pdbx_validate_rmsd_angle.auth_atom_id_1 O
_pdbx_validate_rmsd_angle.auth_asym_id_1 B
_pdbx_validate_rmsd_angle.auth_comp_id_1 OMZ
_pdbx_validate_rmsd_angle.auth_seq_id_1 2
_pdbx_validate_rmsd_angle.PDB_ins_code_1 ?
_pdbx_validate_rmsd_angle.label_alt_id_1 ?
_pdbx_validate_rmsd_angle.auth_atom_id_2 C
_pdbx_validate_rmsd_angle.auth_asym_id_2 B
_pdbx_validate_rmsd_angle.auth_comp_id_2 OMZ
_pdbx_validate_rmsd_angle.auth_seq_id_2 2
_pdbx_validate_rmsd_angle.PDB_ins_code_2 ?
_pdbx_validate_rmsd_angle.label_alt_id_2 ?
_pdbx_validate_rmsd_angle.auth_atom_id_3 N
_pdbx_validate_rmsd_angle.auth_asym_id_3 B
_pdbx_validate_rmsd_angle.auth_comp_id_3 ASN
_pdbx_validate_rmsd_angle.auth_seq_id_3 3
_pdbx_validate_rmsd_angle.PDB_ins_code_3 ?
_pdbx_validate_rmsd_angle.label_alt_id_3 ?
_pdbx_validate_rmsd_angle.angle_value 110.40
_pdbx_validate_rmsd_angle.angle_target_value 122.70
_pdbx_validate_rmsd_angle.angle_deviation -12.30
_pdbx_validate_rmsd_angle.angle_standard_deviation 1.60
_pdbx_validate_rmsd_angle.linker_flag Y
#
_pdbx_validate_torsion.id 1
_pdbx_validate_torsion.PDB_model_num 1
_pdbx_validate_torsion.auth_comp_id ASN
_pdbx_validate_torsion.auth_asym_id C
_pdbx_validate_torsion.auth_seq_id 3
_pdbx_validate_torsion.PDB_ins_code ?
_pdbx_validate_torsion.label_alt_id ?
_pdbx_validate_torsion.phi -95.79
_pdbx_validate_torsion.psi -61.12
#
loop_
_pdbx_unobs_or_zero_occ_atoms.id
_pdbx_unobs_or_zero_occ_atoms.PDB_model_num
_pdbx_unobs_or_zero_occ_atoms.polymer_flag
_pdbx_unobs_or_zero_occ_atoms.occupancy_flag
_pdbx_unobs_or_zero_occ_atoms.auth_asym_id
_pdbx_unobs_or_zero_occ_atoms.auth_comp_id
_pdbx_unobs_or_zero_occ_atoms.auth_seq_id
_pdbx_unobs_or_zero_occ_atoms.PDB_ins_code
_pdbx_unobs_or_zero_occ_atoms.auth_atom_id
_pdbx_unobs_or_zero_occ_atoms.label_alt_id
_pdbx_unobs_or_zero_occ_atoms.label_asym_id
_pdbx_unobs_or_zero_occ_atoms.label_comp_id
_pdbx_unobs_or_zero_occ_atoms.label_seq_id
_pdbx_unobs_or_zero_occ_atoms.label_atom_id
1 1 Y 1 B MLU 1 ? CG ? B MLU 1 CG
2 1 Y 1 B MLU 1 ? CD1 ? B MLU 1 CD1
3 1 Y 1 B MLU 1 ? CD2 ? B MLU 1 CD2
4 1 N 1 C CIT 1003 ? C2 ? M CIT 1 C2
5 1 N 1 C CIT 1003 ? C3 ? M CIT 1 C3
6 1 N 1 C CIT 1003 ? O7 ? M CIT 1 O7
7 1 N 1 C CIT 1003 ? C4 ? M CIT 1 C4
8 1 N 1 C CIT 1003 ? C5 ? M CIT 1 C5
9 1 N 1 C CIT 1003 ? O3 ? M CIT 1 O3
10 1 N 1 C CIT 1003 ? O4 ? M CIT 1 O4
11 1 N 1 C CIT 1003 ? C6 ? M CIT 1 C6
12 1 N 1 C CIT 1003 ? O5 ? M CIT 1 O5
13 1 N 1 C CIT 1003 ? O6 ? M CIT 1 O6
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
3FG N N N N 1
3FG OD1 O N N 2
3FG CD1 C Y N 3
3FG CG1 C Y N 4
3FG CZ C Y N 5
3FG CD2 C Y N 6
3FG OD2 O N N 7
3FG CG2 C Y N 8
3FG CB C Y N 9
3FG CA C N S 10
3FG C C N N 11
3FG O O N N 12
3FG OXT O N N 13
3FG H H N N 14
3FG H2 H N N 15
3FG HA H N N 16
3FG HD1 H N N 17
3FG HG1 H N N 18
3FG HZ H N N 19
3FG HD2 H N N 20
3FG HG2 H N N 21
3FG HXT H N N 22
ASN N N N N 23
ASN CA C N S 24
ASN C C N N 25
ASN O O N N 26
ASN CB C N N 27
ASN CG C N N 28
ASN OD1 O N N 29
ASN ND2 N N N 30
ASN OXT O N N 31
ASN H H N N 32
ASN H2 H N N 33
ASN HA H N N 34
ASN HB2 H N N 35
ASN HB3 H N N 36
ASN HD21 H N N 37
ASN HD22 H N N 38
ASN HXT H N N 39
BGC C2 C N R 40
BGC C3 C N S 41
BGC C4 C N S 42
BGC C5 C N R 43
BGC C6 C N N 44
BGC C1 C N R 45
BGC O1 O N N 46
BGC O2 O N N 47
BGC O3 O N N 48
BGC O4 O N N 49
BGC O5 O N N 50
BGC O6 O N N 51
BGC H2 H N N 52
BGC H3 H N N 53
BGC H4 H N N 54
BGC H5 H N N 55
BGC H61 H N N 56
BGC H62 H N N 57
BGC H1 H N N 58
BGC HO1 H N N 59
BGC HO2 H N N 60
BGC HO3 H N N 61
BGC HO4 H N N 62
BGC HO6 H N N 63
CIT C1 C N N 64
CIT O1 O N N 65
CIT O2 O N N 66
CIT C2 C N N 67
CIT C3 C N N 68
CIT O7 O N N 69
CIT C4 C N N 70
CIT C5 C N N 71
CIT O3 O N N 72
CIT O4 O N N 73
CIT C6 C N N 74
CIT O5 O N N 75
CIT O6 O N N 76
CIT HO2 H N N 77
CIT H21 H N N 78
CIT H22 H N N 79
CIT HO7 H N N 80
CIT H41 H N N 81
CIT H42 H N N 82
CIT HO4 H N N 83
CIT HO6 H N N 84
ERE C1 C N R 85
ERE C2 C N N 86
ERE C3 C N S 87
ERE C4 C N R 88
ERE C5 C N S 89
ERE O5 O N N 90
ERE C3A C N N 91
ERE N3 N N N 92
ERE O4 O N N 93
ERE C5A C N N 94
ERE O1 O N N 95
ERE H1 H N N 96
ERE H21 H N N 97
ERE H22 H N N 98
ERE HO1 H N N 99
ERE H4 H N N 100
ERE H31 H N N 101
ERE H32 H N N 102
ERE H33 H N N 103
ERE HN31 H N N 104
ERE HN32 H N N 105
ERE H5 H N N 106
ERE HO4 H N N 107
ERE H51 H N N 108
ERE H52 H N N 109
ERE H53 H N N 110
GHP N N N N 111
GHP CA C N R 112
GHP C C N N 113
GHP O O N N 114
GHP OXT O N N 115
GHP C1 C Y N 116
GHP C2 C Y N 117
GHP C3 C Y N 118
GHP C4 C Y N 119
GHP O4 O N N 120
GHP C5 C Y N 121
GHP C6 C Y N 122
GHP H H N N 123
GHP H2 H N N 124
GHP HA H N N 125
GHP HXT H N N 126
GHP HC2 H N N 127
GHP H3 H N N 128
GHP HO4 H N N 129
GHP H5 H N N 130
GHP H6 H N N 131
HOH O O N N 132
HOH H1 H N N 133
HOH H2 H N N 134
MLU N N N N 135
MLU CN C N N 136
MLU CA C N R 137
MLU C C N N 138
MLU O O N N 139
MLU CB C N N 140
MLU CG C N N 141
MLU CD1 C N N 142
MLU CD2 C N N 143
MLU OXT O N N 144
MLU H H N N 145
MLU HCN1 H N N 146
MLU HCN2 H N N 147
MLU HCN3 H N N 148
MLU HA H N N 149
MLU HB2 H N N 150
MLU HB3 H N N 151
MLU HXT H N N 152
MLU HG H N N 153
MLU HD11 H N N 154
MLU HD12 H N N 155
MLU HD13 H N N 156
MLU HD21 H N N 157
MLU HD22 H N N 158
MLU HD23 H N N 159
OMX N N N N 160
OMX CA C N S 161
OMX C C N N 162
OMX O O N N 163
OMX CB C N R 164
OMX OC O N N 165
OMX CG C Y N 166
OMX CD1 C Y N 167
OMX CD2 C Y N 168
OMX CE1 C Y N 169
OMX CE2 C Y N 170
OMX CZ C Y N 171
OMX OH O N N 172
OMX OXT O N N 173
OMX H H N N 174
OMX H2 H N N 175
OMX HA H N N 176
OMX HB H N N 177
OMX HXT H N N 178
OMX HC H N N 179
OMX HD1 H N N 180
OMX HD2 H N N 181
OMX HE1 H N N 182
OMX HE2 H N N 183
OMX HH H N N 184
OMZ N N N N 185
OMZ CA C N R 186
OMZ C C N N 187
OMZ O O N N 188
OMZ OXT O N N 189
OMZ CB C N R 190
OMZ OC O N N 191
OMZ CG C Y N 192
OMZ CD1 C Y N 193
OMZ CD2 C Y N 194
OMZ CE1 C Y N 195
OMZ CL CL N N 196
OMZ CE2 C Y N 197
OMZ CZ C Y N 198
OMZ OH O N N 199
OMZ H H N N 200
OMZ H2 H N N 201
OMZ HA H N N 202
OMZ HB H N N 203
OMZ HXT H N N 204
OMZ HC H N N 205
OMZ HD1 H N N 206
OMZ HD2 H N N 207
OMZ HE2 H N N 208
OMZ HH H N N 209
RAM C1 C N R 210
RAM C2 C N R 211
RAM C3 C N R 212
RAM C4 C N R 213
RAM C5 C N S 214
RAM C6 C N N 215
RAM O1 O N N 216
RAM O2 O N N 217
RAM O3 O N N 218
RAM O4 O N N 219
RAM O5 O N N 220
RAM H1 H N N 221
RAM H2 H N N 222
RAM H3 H N N 223
RAM H4 H N N 224
RAM H5 H N N 225
RAM H61 H N N 226
RAM H62 H N N 227
RAM H63 H N N 228
RAM HO1 H N N 229
RAM HO2 H N N 230
RAM HO3 H N N 231
RAM HO4 H N N 232
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
3FG N CA sing N N 1
3FG OD1 CD1 sing N N 2
3FG CD1 CG1 sing Y N 3
3FG CD1 CZ doub Y N 4
3FG CG1 CB doub Y N 5
3FG CZ CD2 sing Y N 6
3FG CD2 OD2 sing N N 7
3FG CD2 CG2 doub Y N 8
3FG CG2 CB sing Y N 9
3FG CB CA sing N N 10
3FG CA C sing N N 11
3FG C O doub N N 12
3FG C OXT sing N N 13
3FG N H sing N N 14
3FG N H2 sing N N 15
3FG CA HA sing N N 16
3FG OD1 HD1 sing N N 17
3FG CG1 HG1 sing N N 18
3FG CZ HZ sing N N 19
3FG OD2 HD2 sing N N 20
3FG CG2 HG2 sing N N 21
3FG OXT HXT sing N N 22
ASN N CA sing N N 23
ASN N H sing N N 24
ASN N H2 sing N N 25
ASN CA C sing N N 26
ASN CA CB sing N N 27
ASN CA HA sing N N 28
ASN C O doub N N 29
ASN C OXT sing N N 30
ASN CB CG sing N N 31
ASN CB HB2 sing N N 32
ASN CB HB3 sing N N 33
ASN CG OD1 doub N N 34
ASN CG ND2 sing N N 35
ASN ND2 HD21 sing N N 36
ASN ND2 HD22 sing N N 37
ASN OXT HXT sing N N 38
BGC C2 C3 sing N N 39
BGC C2 C1 sing N N 40
BGC C2 O2 sing N N 41
BGC C2 H2 sing N N 42
BGC C3 C4 sing N N 43
BGC C3 O3 sing N N 44
BGC C3 H3 sing N N 45
BGC C4 C5 sing N N 46
BGC C4 O4 sing N N 47
BGC C4 H4 sing N N 48
BGC C5 C6 sing N N 49
BGC C5 O5 sing N N 50
BGC C5 H5 sing N N 51
BGC C6 O6 sing N N 52
BGC C6 H61 sing N N 53
BGC C6 H62 sing N N 54
BGC C1 O1 sing N N 55
BGC C1 O5 sing N N 56
BGC C1 H1 sing N N 57
BGC O1 HO1 sing N N 58
BGC O2 HO2 sing N N 59
BGC O3 HO3 sing N N 60
BGC O4 HO4 sing N N 61
BGC O6 HO6 sing N N 62
CIT C1 O1 doub N N 63
CIT C1 O2 sing N N 64
CIT C1 C2 sing N N 65
CIT O2 HO2 sing N N 66
CIT C2 C3 sing N N 67
CIT C2 H21 sing N N 68
CIT C2 H22 sing N N 69
CIT C3 O7 sing N N 70
CIT C3 C4 sing N N 71
CIT C3 C6 sing N N 72
CIT O7 HO7 sing N N 73
CIT C4 C5 sing N N 74
CIT C4 H41 sing N N 75
CIT C4 H42 sing N N 76
CIT C5 O3 doub N N 77
CIT C5 O4 sing N N 78
CIT O4 HO4 sing N N 79
CIT C6 O5 doub N N 80
CIT C6 O6 sing N N 81
CIT O6 HO6 sing N N 82
ERE C1 C2 sing N N 83
ERE C1 O5 sing N N 84
ERE C1 O1 sing N N 85
ERE C2 C3 sing N N 86
ERE C3 C4 sing N N 87
ERE C3 C3A sing N N 88
ERE C3 N3 sing N N 89
ERE C4 C5 sing N N 90
ERE C4 O4 sing N N 91
ERE C5 O5 sing N N 92
ERE C5 C5A sing N N 93
ERE C1 H1 sing N N 94
ERE C2 H21 sing N N 95
ERE C2 H22 sing N N 96
ERE O1 HO1 sing N N 97
ERE C4 H4 sing N N 98
ERE C3A H31 sing N N 99
ERE C3A H32 sing N N 100
ERE C3A H33 sing N N 101
ERE N3 HN31 sing N N 102
ERE N3 HN32 sing N N 103
ERE C5 H5 sing N N 104
ERE O4 HO4 sing N N 105
ERE C5A H51 sing N N 106
ERE C5A H52 sing N N 107
ERE C5A H53 sing N N 108
GHP N CA sing N N 109
GHP N H sing N N 110
GHP N H2 sing N N 111
GHP CA C sing N N 112
GHP CA C1 sing N N 113
GHP CA HA sing N N 114
GHP C O doub N N 115
GHP C OXT sing N N 116
GHP OXT HXT sing N N 117
GHP C1 C2 doub Y N 118
GHP C1 C6 sing Y N 119
GHP C2 C3 sing Y N 120
GHP C2 HC2 sing N N 121
GHP C3 C4 doub Y N 122
GHP C3 H3 sing N N 123
GHP C4 O4 sing N N 124
GHP C4 C5 sing Y N 125
GHP O4 HO4 sing N N 126
GHP C5 C6 doub Y N 127
GHP C5 H5 sing N N 128
GHP C6 H6 sing N N 129
HOH O H1 sing N N 130
HOH O H2 sing N N 131
MLU N CN sing N N 132
MLU N CA sing N N 133
MLU CA C sing N N 134
MLU CA CB sing N N 135
MLU C O doub N N 136
MLU C OXT sing N N 137
MLU CB CG sing N N 138
MLU CG CD1 sing N N 139
MLU CG CD2 sing N N 140
MLU N H sing N N 141
MLU CN HCN1 sing N N 142
MLU CN HCN2 sing N N 143
MLU CN HCN3 sing N N 144
MLU CA HA sing N N 145
MLU CB HB2 sing N N 146
MLU CB HB3 sing N N 147
MLU OXT HXT sing N N 148
MLU CG HG sing N N 149
MLU CD1 HD11 sing N N 150
MLU CD1 HD12 sing N N 151
MLU CD1 HD13 sing N N 152
MLU CD2 HD21 sing N N 153
MLU CD2 HD22 sing N N 154
MLU CD2 HD23 sing N N 155
OMX N CA sing N N 156
OMX CA C sing N N 157
OMX CA CB sing N N 158
OMX C O doub N N 159
OMX C OXT sing N N 160
OMX CB OC sing N N 161
OMX CB CG sing N N 162
OMX CG CD1 sing Y N 163
OMX CG CD2 doub Y N 164
OMX CD1 CE1 doub Y N 165
OMX CD2 CE2 sing Y N 166
OMX CE1 CZ sing Y N 167
OMX CE2 CZ doub Y N 168
OMX CZ OH sing N N 169
OMX N H sing N N 170
OMX N H2 sing N N 171
OMX CA HA sing N N 172
OMX CB HB sing N N 173
OMX OXT HXT sing N N 174
OMX OC HC sing N N 175
OMX CD1 HD1 sing N N 176
OMX CD2 HD2 sing N N 177
OMX CE1 HE1 sing N N 178
OMX CE2 HE2 sing N N 179
OMX OH HH sing N N 180
OMZ N CA sing N N 181
OMZ CA C sing N N 182
OMZ CA CB sing N N 183
OMZ C O doub N N 184
OMZ C OXT sing N N 185
OMZ CL CE1 sing N N 186
OMZ CB OC sing N N 187
OMZ CB CG sing N N 188
OMZ CG CD1 doub Y N 189
OMZ CG CD2 sing Y N 190
OMZ CD1 CE1 sing Y N 191
OMZ CD2 CE2 doub Y N 192
OMZ CE1 CZ doub Y N 193
OMZ CE2 CZ sing Y N 194
OMZ CZ OH sing N N 195
OMZ N H sing N N 196
OMZ N H2 sing N N 197
OMZ CA HA sing N N 198
OMZ CB HB sing N N 199
OMZ OXT HXT sing N N 200
OMZ OC HC sing N N 201
OMZ CD1 HD1 sing N N 202
OMZ CD2 HD2 sing N N 203
OMZ CE2 HE2 sing N N 204
OMZ OH HH sing N N 205
RAM C1 C2 sing N N 206
RAM C1 O1 sing N N 207
RAM C1 O5 sing N N 208
RAM C1 H1 sing N N 209
RAM C2 C3 sing N N 210
RAM C2 O2 sing N N 211
RAM C2 H2 sing N N 212
RAM C3 C4 sing N N 213
RAM C3 O3 sing N N 214
RAM C3 H3 sing N N 215
RAM C4 C5 sing N N 216
RAM C4 O4 sing N N 217
RAM C4 H4 sing N N 218
RAM C5 C6 sing N N 219
RAM C5 O5 sing N N 220
RAM C5 H5 sing N N 221
RAM C6 H61 sing N N 222
RAM C6 H62 sing N N 223
RAM C6 H63 sing N N 224
RAM O1 HO1 sing N N 225
RAM O2 HO2 sing N N 226
RAM O3 HO3 sing N N 227
RAM O4 HO4 sing N N 228
#
loop_
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_mon_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.hetero
E 2 BGC 1 E BGC 1 A BGC 9 n
E 2 RAM 2 E RAM 2 A RAM 10 n
F 2 BGC 1 F BGC 1 B BGC 9 n
F 2 RAM 2 F RAM 2 B RAM 10 n
G 2 BGC 1 G BGC 1 C BGC 9 n
G 2 RAM 2 G RAM 2 C RAM 10 n
H 2 BGC 1 H BGC 1 D BGC 9 n
H 2 RAM 2 H RAM 2 D RAM 10 n
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
BGC 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpb
BGC 'COMMON NAME' GMML 1.0 b-D-glucopyranose
BGC 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Glcp
BGC 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Glc
RAM 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 LRhapa
RAM 'COMMON NAME' GMML 1.0 a-L-rhamnopyranose
RAM 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-L-Rhap
RAM 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Rha
#
_pdbx_entity_branch.entity_id 2
_pdbx_entity_branch.type oligosaccharide
#
loop_
_pdbx_entity_branch_descriptor.ordinal
_pdbx_entity_branch_descriptor.entity_id
_pdbx_entity_branch_descriptor.descriptor
_pdbx_entity_branch_descriptor.type
_pdbx_entity_branch_descriptor.program
_pdbx_entity_branch_descriptor.program_version
1 2 LRhapa1-2DGlcpb1-ROH 'Glycam Condensed Sequence' GMML 1.0
2 2 'WURCS=2.0/2,2,1/[a2122h-1b_1-5][a2211m-1a_1-5]/1-2/a2-b1' WURCS PDB2Glycan 1.1.0
3 2 '[][D-1-deoxy-Glcp]{[(2+1)][a-L-Rhap]{}}' LINUCS PDB-CARE ?
#
_pdbx_entity_branch_link.link_id 1
_pdbx_entity_branch_link.entity_id 2
_pdbx_entity_branch_link.entity_branch_list_num_1 2
_pdbx_entity_branch_link.comp_id_1 RAM
_pdbx_entity_branch_link.atom_id_1 C1
_pdbx_entity_branch_link.leaving_atom_id_1 O1
_pdbx_entity_branch_link.entity_branch_list_num_2 1
_pdbx_entity_branch_link.comp_id_2 BGC
_pdbx_entity_branch_link.atom_id_2 O2
_pdbx_entity_branch_link.leaving_atom_id_2 HO2
_pdbx_entity_branch_link.value_order sing
_pdbx_entity_branch_link.details ?
#
loop_
_pdbx_entity_branch_list.entity_id
_pdbx_entity_branch_list.comp_id
_pdbx_entity_branch_list.num
_pdbx_entity_branch_list.hetero
2 BGC 1 n
2 RAM 2 n
#
loop_
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_entity_nonpoly.comp_id
3 4-epi-vancosamine ERE
4 'CITRIC ACID' CIT
5 water HOH
#
_pdbx_initial_refinement_model.id 1
_pdbx_initial_refinement_model.entity_id_list ?
_pdbx_initial_refinement_model.type 'experimental model'
_pdbx_initial_refinement_model.source_name PDB
_pdbx_initial_refinement_model.accession_code 1HH3
_pdbx_initial_refinement_model.details 'PDB ENTRY 1HH3'
#