data_1HHF # _entry.id 1HHF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1HHF PDBE EBI-5729 WWPDB D_1290005729 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 1HHA unspecified 'CRYSTAL STRUCTURE OF DECAPLANIN - SPACE GROUP P6122' PDB 1HHC unspecified 'CRYSTAL STRUCTURE OF DECAPLANIN - SPACE GROUP P21, SECOND FORM' PDB 1HHF unspecified 'CRYSTAL STRUCTURE OF DECAPLANIN - SPACE GROUP P6122, SECOND FORM' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1HHF _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2000-12-22 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Lehmann, C.' 1 'Vertessy, L.' 2 'Sheldrick, G.M.' 3 'Dauter, Z.' 4 'Dauter, M.' 5 # _citation.id primary _citation.title 'Structures of Four Crystal Forms of Decaplanin' _citation.journal_abbrev Helv.Chim.Acta _citation.journal_volume 86 _citation.page_first 1478 _citation.page_last ? _citation.year 2003 _citation.journal_id_ASTM HCACAV _citation.country SZ _citation.journal_id_ISSN 0018-019X _citation.journal_id_CSD 0010 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI 10.1002/HLCA.200390131 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Lehmann, C.' 1 ? primary 'Debreczeni, J.E.' 2 ? primary 'Bunkoczi, G.' 3 ? primary 'Dauter, M.' 4 ? primary 'Dauter, Z.' 5 ? primary 'Vertesy, L.' 6 ? primary 'Sheldrick, G.M.' 7 ? # _cell.entry_id 1HHF _cell.length_a 60.101 _cell.length_b 60.101 _cell.length_c 131.387 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1HHF _symmetry.space_group_name_H-M 'P 61 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat DECAPLANIN 1115.532 4 ? ? ? ? 2 branched man 'alpha-L-rhamnopyranose-(1-2)-beta-D-glucopyranose' 326.297 4 ? ? ? ? 3 non-polymer man 4-epi-vancosamine 161.199 4 ? ? ? ? 4 non-polymer syn 'CHLORIDE ION' 35.453 4 ? ? ? ? 5 non-polymer syn 'PHOSPHATE ION' 94.971 2 ? ? ? ? 6 water nat water 18.015 94 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name M86-1410 # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(MLU)(OMZ)N(GHP)(GHP)(OMX)(3FG)' _entity_poly.pdbx_seq_one_letter_code_can XXNGGYX _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MLU n 1 2 OMZ n 1 3 ASN n 1 4 GHP n 1 5 GHP n 1 6 OMX n 1 7 3FG n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'UNCULTURED ACTINOMYCETE' _entity_src_nat.pdbx_ncbi_taxonomy_id 100235 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain 'DSM 4763' _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details 'CULTURE HIL Y-86, 36910' # _struct_ref.id 1 _struct_ref.db_name NOR _struct_ref.db_code NOR00692 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession NOR00692 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1HHF A 1 ? 7 ? NOR00692 1 ? 7 ? 1 7 2 1 1HHF B 1 ? 7 ? NOR00692 1 ? 7 ? 1 7 3 1 1HHF C 1 ? 7 ? NOR00692 1 ? 7 ? 1 7 4 1 1HHF D 1 ? 7 ? NOR00692 1 ? 7 ? 1 7 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 3FG 'L-peptide linking' . '(2S)-amino(3,5-dihydroxyphenyl)ethanoic acid' ? 'C8 H9 N O4' 183.161 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 BGC 'D-saccharide, beta linking' . beta-D-glucopyranose ? 'C6 H12 O6' 180.156 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 ERE 'L-saccharide, alpha linking' . 4-epi-vancosamine 4-EPI-VANCOSAMINE 'C7 H15 N O3' 161.199 GHP 'D-peptide linking' . '(2R)-amino(4-hydroxyphenyl)ethanoic acid' ? 'C8 H9 N O3' 167.162 HOH non-polymer . WATER ? 'H2 O' 18.015 MLU 'D-peptide linking' . N-methyl-D-leucine ? 'C7 H15 N O2' 145.199 OMX 'L-peptide linking' n '(betaR)-beta-hydroxy-L-Tyrosine' ? 'C9 H11 N O4' 197.188 OMZ 'D-peptide linking' . '(betaR)-3-CHLORO-BETA-HYDROXY-D-TYROSINE' ? 'C9 H10 Cl N O4' 231.633 PO4 non-polymer . 'PHOSPHATE ION' ? 'O4 P -3' 94.971 RAM 'L-saccharide, alpha linking' . alpha-L-rhamnopyranose ? 'C6 H12 O5' 164.156 # _exptl.entry_id 1HHF _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 5.38 _exptl_crystal.density_percent_sol 69.1 _exptl_crystal.description 'SAS OF CHLORINE AT 1.5A' # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.50 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '0.1M TRIS/HCL, PH=8.5, 2M NH4H2PO4, pH 8.50' # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 1998-09-15 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.83450 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'EMBL/DESY, HAMBURG BEAMLINE BW7B' _diffrn_source.pdbx_synchrotron_site 'EMBL/DESY, HAMBURG' _diffrn_source.pdbx_synchrotron_beamline BW7B _diffrn_source.pdbx_wavelength 0.83450 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 1HHF _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 48.390 _reflns.d_resolution_high 1.470 _reflns.number_obs 24558 _reflns.number_all ? _reflns.percent_possible_obs 99.1 _reflns.pdbx_Rmerge_I_obs 0.05100 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 18.7400 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 12.000 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.47 _reflns_shell.d_res_low 1.60 _reflns_shell.percent_possible_all 99.6 _reflns_shell.Rmerge_I_obs 0.35000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 5.960 _reflns_shell.pdbx_redundancy 11.00 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 1HHF _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all 24558 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 48.39 _refine.ls_d_res_high 1.47 _refine.ls_percent_reflns_obs 99.1 _refine.ls_R_factor_obs 0.1800 _refine.ls_R_factor_all 0.1787 _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free 0.2111 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 1244 _refine.ls_number_parameters 4895 _refine.ls_number_restraints 7785 _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'MOEWS & KRETSINGER, J.MOL.BIOL.91(1973)201-228' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct OTHER _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'ENGH AND HUBER' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details SHELLS _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.entry_id 1HHF _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues 0 _refine_analyze.occupancy_sum_hydrogen 348.00 _refine_analyze.occupancy_sum_non_hydrogen 541.50 # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 316 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 138 _refine_hist.number_atoms_solvent 94 _refine_hist.number_atoms_total 548 _refine_hist.d_res_high 1.47 _refine_hist.d_res_low 48.39 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function s_bond_d 0.010 ? ? ? 'X-RAY DIFFRACTION' ? s_angle_d 0.027 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_dist 0.017 ? ? ? 'X-RAY DIFFRACTION' ? s_from_restr_planes 0.063 ? ? ? 'X-RAY DIFFRACTION' ? s_zero_chiral_vol 0.095 ? ? ? 'X-RAY DIFFRACTION' ? s_non_zero_chiral_vol ? ? ? ? 'X-RAY DIFFRACTION' ? s_anti_bump_dis_restr 0.053 ? ? ? 'X-RAY DIFFRACTION' ? s_rigid_bond_adp_cmpnt 0.004 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_adp_cmpnt 0.027 ? ? ? 'X-RAY DIFFRACTION' ? s_approx_iso_adps 0.089 ? ? ? 'X-RAY DIFFRACTION' ? # _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.entry_id 1HHF _pdbx_refine.R_factor_all_no_cutoff 0.1787 _pdbx_refine.R_factor_obs_no_cutoff 0.1800 _pdbx_refine.free_R_factor_no_cutoff 0.2111 _pdbx_refine.free_R_error_no_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff 5.1 _pdbx_refine.free_R_val_test_set_ct_no_cutoff 1244 _pdbx_refine.R_factor_all_4sig_cutoff 0.1729 _pdbx_refine.R_factor_obs_4sig_cutoff 0.1740 _pdbx_refine.free_R_factor_4sig_cutoff 0.2059 _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff 5.1 _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff 1134 _pdbx_refine.number_reflns_obs_4sig_cutoff 21989 # loop_ _struct_ncs_oper.id _struct_ncs_oper.code _struct_ncs_oper.details _struct_ncs_oper.matrix[1][1] _struct_ncs_oper.matrix[1][2] _struct_ncs_oper.matrix[1][3] _struct_ncs_oper.matrix[2][1] _struct_ncs_oper.matrix[2][2] _struct_ncs_oper.matrix[2][3] _struct_ncs_oper.matrix[3][1] _struct_ncs_oper.matrix[3][2] _struct_ncs_oper.matrix[3][3] _struct_ncs_oper.vector[1] _struct_ncs_oper.vector[2] _struct_ncs_oper.vector[3] 1 given ? -0.101480 -0.989450 0.103360 -0.993860 0.096220 -0.054690 0.044170 -0.108270 -0.993140 65.61858 62.96038 48.16151 2 given ? -0.101480 -0.989450 0.103360 -0.993860 0.096220 -0.054690 0.044170 -0.108270 -0.993140 65.61858 62.96038 48.16151 3 given ? 0.839660 0.542960 -0.012650 -0.538600 0.835470 0.109070 0.069790 -0.084770 0.993950 8.49048 30.28199 -12.53756 # _struct.entry_id 1HHF _struct.title 'Decaplanin second P6122-Form' _struct.pdbx_descriptor DECAPLANIN _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1HHF _struct_keywords.pdbx_keywords ANTIBIOTIC _struct_keywords.text 'ANTIBIOTIC, GLYCOPEPTIDE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 3 ? J N N 4 ? K N N 4 ? L N N 3 ? M N N 3 ? N N N 4 ? O N N 4 ? P N N 5 ? Q N N 5 ? R N N 3 ? S N N 6 ? T N N 6 ? U N N 6 ? V N N 6 ? # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A MLU 1 C ? ? ? 1_555 A OMZ 2 N ? ? A MLU 1 A OMZ 2 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale2 covale both ? A OMZ 2 C ? ? ? 1_555 A ASN 3 N ? ? A OMZ 2 A ASN 3 1_555 ? ? ? ? ? ? ? 1.354 ? ? covale3 covale none ? A OMZ 2 OH ? ? ? 1_555 A GHP 4 C5 ? ? A OMZ 2 A GHP 4 1_555 ? ? ? ? ? ? ? 1.385 ? ? covale4 covale both ? A ASN 3 C ? ? ? 1_555 A GHP 4 N ? ? A ASN 3 A GHP 4 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale5 covale both ? A GHP 4 C ? ? ? 1_555 A GHP 5 N ? ? A GHP 4 A GHP 5 1_555 ? ? ? ? ? ? ? 1.352 ? ? covale6 covale none ? A GHP 4 C3 ? ? ? 1_555 A OMX 6 OH ? ? A GHP 4 A OMX 6 1_555 ? ? ? ? ? ? ? 1.387 ? ? covale7 covale one ? A GHP 4 O4 ? ? ? 1_555 E BGC . C1 ? ? A GHP 4 E BGC 1 1_555 ? ? ? ? ? ? ? 1.418 ? ? covale8 covale both ? A GHP 5 C ? ? ? 1_555 A OMX 6 N ? ? A GHP 5 A OMX 6 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale9 covale none ? A GHP 5 C3 ? ? ? 1_555 A 3FG 7 CG1 ? ? A GHP 5 A 3FG 7 1_555 ? ? ? ? ? ? ? 1.488 ? ? covale10 covale both ? A OMX 6 C ? ? ? 1_555 A 3FG 7 N ? ? A OMX 6 A 3FG 7 1_555 ? ? ? ? ? ? ? 1.361 ? ? covale11 covale one ? A OMX 6 OC ? ? ? 1_555 I ERE . C1 ? ? A OMX 6 A ERE 8 1_555 ? ? ? ? ? ? ? 1.416 ? ? covale12 covale both ? B MLU 1 C ? ? ? 1_555 B OMZ 2 N ? ? B MLU 1 B OMZ 2 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale13 covale both ? B OMZ 2 C ? ? ? 1_555 B ASN 3 N ? ? B OMZ 2 B ASN 3 1_555 ? ? ? ? ? ? ? 1.353 ? ? covale14 covale none ? B OMZ 2 OH ? ? ? 1_555 B GHP 4 C5 ? ? B OMZ 2 B GHP 4 1_555 ? ? ? ? ? ? ? 1.388 ? ? covale15 covale both ? B ASN 3 C ? ? ? 1_555 B GHP 4 N ? ? B ASN 3 B GHP 4 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale16 covale both ? B GHP 4 C ? ? ? 1_555 B GHP 5 N ? ? B GHP 4 B GHP 5 1_555 ? ? ? ? ? ? ? 1.353 ? ? covale17 covale none ? B GHP 4 C3 ? ? ? 1_555 B OMX 6 OH ? ? B GHP 4 B OMX 6 1_555 ? ? ? ? ? ? ? 1.392 ? ? covale18 covale one ? B GHP 4 O4 ? ? ? 1_555 F BGC . C1 ? ? B GHP 4 F BGC 1 1_555 ? ? ? ? ? ? ? 1.419 ? ? covale19 covale both ? B GHP 5 C ? ? ? 1_555 B OMX 6 N ? ? B GHP 5 B OMX 6 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale20 covale none ? B GHP 5 C3 ? ? ? 1_555 B 3FG 7 CG1 ? ? B GHP 5 B 3FG 7 1_555 ? ? ? ? ? ? ? 1.490 ? ? covale21 covale both ? B OMX 6 C ? ? ? 1_555 B 3FG 7 N ? ? B OMX 6 B 3FG 7 1_555 ? ? ? ? ? ? ? 1.369 ? ? covale22 covale one ? B OMX 6 OC ? ? ? 1_555 L ERE . C1 ? ? B OMX 6 B ERE 8 1_555 ? ? ? ? ? ? ? 1.423 ? ? covale23 covale both ? C MLU 1 C ? ? ? 1_555 C OMZ 2 N ? ? C MLU 1 C OMZ 2 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale24 covale both ? C OMZ 2 C ? ? ? 1_555 C ASN 3 N ? ? C OMZ 2 C ASN 3 1_555 ? ? ? ? ? ? ? 1.350 ? ? covale25 covale none ? C OMZ 2 OH ? ? ? 1_555 C GHP 4 C5 ? ? C OMZ 2 C GHP 4 1_555 ? ? ? ? ? ? ? 1.389 ? ? covale26 covale both ? C ASN 3 C ? ? ? 1_555 C GHP 4 N ? ? C ASN 3 C GHP 4 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale27 covale both ? C GHP 4 C ? ? ? 1_555 C GHP 5 N ? ? C GHP 4 C GHP 5 1_555 ? ? ? ? ? ? ? 1.348 ? ? covale28 covale none ? C GHP 4 C3 ? ? ? 1_555 C OMX 6 OH ? ? C GHP 4 C OMX 6 1_555 ? ? ? ? ? ? ? 1.396 ? ? covale29 covale one ? C GHP 4 O4 ? ? ? 1_555 G BGC . C1 ? ? C GHP 4 G BGC 1 1_555 ? ? ? ? ? ? ? 1.399 ? ? covale30 covale both ? C GHP 5 C ? ? ? 1_555 C OMX 6 N ? ? C GHP 5 C OMX 6 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale31 covale none ? C GHP 5 C3 ? ? ? 1_555 C 3FG 7 CG1 ? ? C GHP 5 C 3FG 7 1_555 ? ? ? ? ? ? ? 1.491 ? ? covale32 covale both ? C OMX 6 C ? ? ? 1_555 C 3FG 7 N ? ? C OMX 6 C 3FG 7 1_555 ? ? ? ? ? ? ? 1.359 ? ? covale33 covale one ? C OMX 6 OC ? ? ? 1_555 M ERE . C1 ? ? C OMX 6 C ERE 8 1_555 ? ? ? ? ? ? ? 1.400 ? ? covale34 covale both ? D MLU 1 C ? ? ? 1_555 D OMZ 2 N ? ? D MLU 1 D OMZ 2 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale35 covale both ? D OMZ 2 C ? ? ? 1_555 D ASN 3 N ? ? D OMZ 2 D ASN 3 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale36 covale none ? D OMZ 2 OH ? ? ? 1_555 D GHP 4 C5 ? ? D OMZ 2 D GHP 4 1_555 ? ? ? ? ? ? ? 1.391 ? ? covale37 covale both ? D ASN 3 C ? ? ? 1_555 D GHP 4 N ? ? D ASN 3 D GHP 4 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale38 covale both ? D GHP 4 C ? ? ? 1_555 D GHP 5 N ? ? D GHP 4 D GHP 5 1_555 ? ? ? ? ? ? ? 1.358 ? ? covale39 covale none ? D GHP 4 C3 ? ? ? 1_555 D OMX 6 OH ? ? D GHP 4 D OMX 6 1_555 ? ? ? ? ? ? ? 1.386 ? ? covale40 covale one ? D GHP 4 O4 ? ? ? 1_555 H BGC . C1 ? ? D GHP 4 H BGC 1 1_555 ? ? ? ? ? ? ? 1.414 ? ? covale41 covale both ? D GHP 5 C ? ? ? 1_555 D OMX 6 N ? ? D GHP 5 D OMX 6 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale42 covale none ? D GHP 5 C3 ? ? ? 1_555 D 3FG 7 CG1 ? ? D GHP 5 D 3FG 7 1_555 ? ? ? ? ? ? ? 1.484 ? ? covale43 covale both ? D OMX 6 C ? ? ? 1_555 D 3FG 7 N ? ? D OMX 6 D 3FG 7 1_555 ? ? ? ? ? ? ? 1.359 ? ? covale44 covale one ? D OMX 6 OC ? ? ? 1_555 R ERE . C1 ? ? D OMX 6 D ERE 8 1_555 ? ? ? ? ? ? ? 1.408 ? ? covale45 covale one ? E BGC . O2 ? ? ? 1_555 E RAM . C1 ? ? E BGC 1 E RAM 2 1_555 ? ? ? ? ? ? ? 1.428 ? ? covale46 covale one ? F BGC . O2 ? ? ? 1_555 F RAM . C1 ? ? F BGC 1 F RAM 2 1_555 ? ? ? ? ? ? ? 1.433 ? ? covale47 covale one ? G BGC . O2 ? ? ? 1_555 G RAM . C1 ? ? G BGC 1 G RAM 2 1_555 ? ? ? ? ? ? ? 1.426 ? ? covale48 covale one ? H BGC . O2 ? ? ? 1_555 H RAM . C1 ? ? H BGC 1 H RAM 2 1_555 ? ? ? ? ? ? ? 1.427 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 GHP 5 A . ? GHP 5 A OMX 6 A ? OMX 6 A 1 6.38 2 GHP 5 B . ? GHP 5 B OMX 6 B ? OMX 6 B 1 5.00 3 GHP 5 C . ? GHP 5 C OMX 6 C ? OMX 6 C 1 4.37 4 GHP 5 D . ? GHP 5 D OMX 6 D ? OMX 6 D 1 10.32 # _database_PDB_matrix.entry_id 1HHF _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1HHF _atom_sites.fract_transf_matrix[1][1] 0.016639 _atom_sites.fract_transf_matrix[1][2] 0.009606 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019213 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007611 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MLU 1 1 1 MLU MLU A . n A 1 2 OMZ 2 2 2 OMZ OMZ A . n A 1 3 ASN 3 3 3 ASN ASN A . n A 1 4 GHP 4 4 4 GHP GHP A . n A 1 5 GHP 5 5 5 GHP GHP A . n A 1 6 OMX 6 6 6 OMX OMX A . n A 1 7 3FG 7 7 7 3FG 3FG A . n B 1 1 MLU 1 1 1 MLU MLU B . n B 1 2 OMZ 2 2 2 OMZ OMZ B . n B 1 3 ASN 3 3 3 ASN ASN B . n B 1 4 GHP 4 4 4 GHP GHP B . n B 1 5 GHP 5 5 5 GHP GHP B . n B 1 6 OMX 6 6 6 OMX OMX B . n B 1 7 3FG 7 7 7 3FG 3FG B . n C 1 1 MLU 1 1 1 MLU MLU C . n C 1 2 OMZ 2 2 2 OMZ OMZ C . n C 1 3 ASN 3 3 3 ASN ASN C . n C 1 4 GHP 4 4 4 GHP GHP C . n C 1 5 GHP 5 5 5 GHP GHP C . n C 1 6 OMX 6 6 6 OMX OMX C . n C 1 7 3FG 7 7 7 3FG 3FG C . n D 1 1 MLU 1 1 1 MLU MLU D . n D 1 2 OMZ 2 2 2 OMZ OMZ D . n D 1 3 ASN 3 3 3 ASN ASN D . n D 1 4 GHP 4 4 4 GHP GHP D . n D 1 5 GHP 5 5 5 GHP GHP D . n D 1 6 OMX 6 6 6 OMX OMX D . n D 1 7 3FG 7 7 7 3FG 3FG D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 ERE 1 8 8 ERE ERE A . J 4 CL 1 1001 1001 CL CL A . K 4 CL 1 1002 1002 CL CL A . L 3 ERE 1 8 8 ERE ERE B . M 3 ERE 1 8 8 ERE ERE C . N 4 CL 1 1003 1003 CL CL C . O 4 CL 1 1004 1004 CL CL C . P 5 PO4 1 1005 1005 PO4 PO4 C . Q 5 PO4 1 1006 1006 PO4 PO4 C . R 3 ERE 1 8 8 ERE ERE D . S 6 HOH 1 2001 2001 HOH HOH A . S 6 HOH 2 2002 2002 HOH HOH A . S 6 HOH 3 2003 2003 HOH HOH A . S 6 HOH 4 2004 2004 HOH HOH A . S 6 HOH 5 2005 2005 HOH HOH A . S 6 HOH 6 2006 2006 HOH HOH A . S 6 HOH 7 2007 2007 HOH HOH A . S 6 HOH 8 2008 2008 HOH HOH A . S 6 HOH 9 2009 2009 HOH HOH A . S 6 HOH 10 2010 2010 HOH HOH A . S 6 HOH 11 2011 2011 HOH HOH A . S 6 HOH 12 2012 2012 HOH HOH A . S 6 HOH 13 2013 2013 HOH HOH A . S 6 HOH 14 2014 2014 HOH HOH A . S 6 HOH 15 2015 2015 HOH HOH A . S 6 HOH 16 2016 2016 HOH HOH A . S 6 HOH 17 2017 2017 HOH HOH A . S 6 HOH 18 2018 2018 HOH HOH A . S 6 HOH 19 2019 2019 HOH HOH A . S 6 HOH 20 2020 2020 HOH HOH A . S 6 HOH 21 2021 2021 HOH HOH A . S 6 HOH 22 2022 2022 HOH HOH A . S 6 HOH 23 2023 2023 HOH HOH A . S 6 HOH 24 2024 2024 HOH HOH A . S 6 HOH 25 2025 2025 HOH HOH A . S 6 HOH 26 2026 2026 HOH HOH A . S 6 HOH 27 2027 2027 HOH HOH A . S 6 HOH 28 2028 2028 HOH HOH A . S 6 HOH 29 2029 2029 HOH HOH A . S 6 HOH 30 2030 2030 HOH HOH A . S 6 HOH 31 2031 2031 HOH HOH A . S 6 HOH 32 2032 2032 HOH HOH A . T 6 HOH 1 2001 2001 HOH HOH B . T 6 HOH 2 2002 2002 HOH HOH B . T 6 HOH 3 2003 2003 HOH HOH B . T 6 HOH 4 2004 2004 HOH HOH B . T 6 HOH 5 2005 2005 HOH HOH B . T 6 HOH 6 2006 2006 HOH HOH B . T 6 HOH 7 2007 2007 HOH HOH B . T 6 HOH 8 2008 2008 HOH HOH B . T 6 HOH 9 2009 2009 HOH HOH B . T 6 HOH 10 2010 2010 HOH HOH B . T 6 HOH 11 2011 2011 HOH HOH B . T 6 HOH 12 2012 2012 HOH HOH B . T 6 HOH 13 2013 2013 HOH HOH B . T 6 HOH 14 2014 2014 HOH HOH B . T 6 HOH 15 2015 2015 HOH HOH B . T 6 HOH 16 2016 2016 HOH HOH B . U 6 HOH 1 2001 2001 HOH HOH C . U 6 HOH 2 2002 2002 HOH HOH C . U 6 HOH 3 2003 2003 HOH HOH C . U 6 HOH 4 2004 2004 HOH HOH C . U 6 HOH 5 2005 2005 HOH HOH C . U 6 HOH 6 2006 2006 HOH HOH C . U 6 HOH 7 2007 2007 HOH HOH C . U 6 HOH 8 2008 2008 HOH HOH C . U 6 HOH 9 2009 2009 HOH HOH C . U 6 HOH 10 2010 2010 HOH HOH C . U 6 HOH 11 2011 2011 HOH HOH C . U 6 HOH 12 2012 2012 HOH HOH C . U 6 HOH 13 2013 2013 HOH HOH C . U 6 HOH 14 2014 2014 HOH HOH C . U 6 HOH 15 2015 2015 HOH HOH C . U 6 HOH 16 2016 2016 HOH HOH C . U 6 HOH 17 2017 2017 HOH HOH C . U 6 HOH 18 2018 2018 HOH HOH C . U 6 HOH 19 2019 2019 HOH HOH C . U 6 HOH 20 2020 2020 HOH HOH C . V 6 HOH 1 2001 2001 HOH HOH D . V 6 HOH 2 2002 2002 HOH HOH D . V 6 HOH 3 2003 2003 HOH HOH D . V 6 HOH 4 2004 2004 HOH HOH D . V 6 HOH 5 2005 2005 HOH HOH D . V 6 HOH 6 2006 2006 HOH HOH D . V 6 HOH 7 2007 2007 HOH HOH D . V 6 HOH 8 2008 2008 HOH HOH D . V 6 HOH 9 2009 2009 HOH HOH D . V 6 HOH 10 2010 2010 HOH HOH D . V 6 HOH 11 2011 2011 HOH HOH D . V 6 HOH 12 2012 2012 HOH HOH D . V 6 HOH 13 2013 2013 HOH HOH D . V 6 HOH 14 2014 2014 HOH HOH D . V 6 HOH 15 2015 2015 HOH HOH D . V 6 HOH 16 2016 2016 HOH HOH D . V 6 HOH 17 2017 2017 HOH HOH D . V 6 HOH 18 2018 2018 HOH HOH D . V 6 HOH 19 2019 2019 HOH HOH D . V 6 HOH 20 2020 2020 HOH HOH D . V 6 HOH 21 2021 2021 HOH HOH D . V 6 HOH 22 2022 2022 HOH HOH D . V 6 HOH 23 2023 2023 HOH HOH D . V 6 HOH 24 2024 2024 HOH HOH D . V 6 HOH 25 2025 2025 HOH HOH D . V 6 HOH 26 2026 2026 HOH HOH D . # _pdbx_molecule_features.prd_id PRD_000207 _pdbx_molecule_features.name Decaplanin _pdbx_molecule_features.type Glycopeptide _pdbx_molecule_features.class Antibiotic _pdbx_molecule_features.details ;DECAPLANIN IS A TRICYCLIC GLYCOPEPTIDE. THE SCAFFOLD IS A HEPTAPEPTIDE WITH THE CONFIGURATION D-D-L-D-D-L-L, GLYCOSYLATED ; # loop_ _pdbx_molecule.instance_id _pdbx_molecule.prd_id _pdbx_molecule.asym_id 1 PRD_000207 A 1 PRD_000207 E 1 PRD_000207 I 2 PRD_000207 B 2 PRD_000207 F 2 PRD_000207 L 3 PRD_000207 C 3 PRD_000207 G 3 PRD_000207 M 4 PRD_000207 D 4 PRD_000207 H 4 PRD_000207 R # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A OMX 6 A OMX 6 ? TYR '(BETAR)-BETA-HYDROXY-L-TYROSINE' 2 B OMX 6 B OMX 6 ? TYR '(BETAR)-BETA-HYDROXY-L-TYROSINE' 3 C OMX 6 C OMX 6 ? TYR '(BETAR)-BETA-HYDROXY-L-TYROSINE' 4 D OMX 6 D OMX 6 ? TYR '(BETAR)-BETA-HYDROXY-L-TYROSINE' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4680 ? 1 MORE -25.0 ? 1 'SSA (A^2)' 3690 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id D _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 2023 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id V _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-07-11 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2012-07-11 4 'Structure model' 1 3 2012-11-30 5 'Structure model' 1 4 2013-05-01 6 'Structure model' 2 0 2019-04-24 7 'Structure model' 2 1 2019-07-10 8 'Structure model' 2 2 2019-07-24 9 'Structure model' 3 0 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 9 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Atomic model' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' 'Structure summary' 5 2 'Structure model' 'Version format compliance' 6 3 'Structure model' Other 7 4 'Structure model' Other 8 5 'Structure model' 'Non-polymer description' 9 6 'Structure model' 'Data collection' 10 6 'Structure model' 'Derived calculations' 11 6 'Structure model' Other 12 6 'Structure model' 'Polymer sequence' 13 7 'Structure model' 'Data collection' 14 8 'Structure model' 'Data collection' 15 9 'Structure model' 'Atomic model' 16 9 'Structure model' 'Data collection' 17 9 'Structure model' 'Derived calculations' 18 9 'Structure model' Other 19 9 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 6 'Structure model' diffrn_source 2 6 'Structure model' entity_poly 3 6 'Structure model' pdbx_database_proc 4 6 'Structure model' pdbx_database_status 5 6 'Structure model' pdbx_seq_map_depositor_info 6 6 'Structure model' struct_conn 7 7 'Structure model' diffrn_source 8 8 'Structure model' diffrn_source 9 9 'Structure model' atom_site 10 9 'Structure model' atom_site_anisotrop 11 9 'Structure model' chem_comp 12 9 'Structure model' entity 13 9 'Structure model' pdbx_branch_scheme 14 9 'Structure model' pdbx_chem_comp_identifier 15 9 'Structure model' pdbx_database_status 16 9 'Structure model' pdbx_entity_branch 17 9 'Structure model' pdbx_entity_branch_descriptor 18 9 'Structure model' pdbx_entity_branch_link 19 9 'Structure model' pdbx_entity_branch_list 20 9 'Structure model' pdbx_entity_nonpoly 21 9 'Structure model' pdbx_molecule 22 9 'Structure model' pdbx_nonpoly_scheme 23 9 'Structure model' pdbx_struct_assembly_gen 24 9 'Structure model' pdbx_struct_special_symmetry 25 9 'Structure model' struct_asym 26 9 'Structure model' struct_conn 27 9 'Structure model' struct_site 28 9 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 6 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 2 6 'Structure model' '_entity_poly.pdbx_seq_one_letter_code_can' 3 6 'Structure model' '_pdbx_database_status.recvd_author_approval' 4 6 'Structure model' '_pdbx_seq_map_depositor_info.one_letter_code' 5 6 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 6 7 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 7 8 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 8 9 'Structure model' '_atom_site.B_iso_or_equiv' 9 9 'Structure model' '_atom_site.Cartn_x' 10 9 'Structure model' '_atom_site.Cartn_y' 11 9 'Structure model' '_atom_site.Cartn_z' 12 9 'Structure model' '_atom_site.auth_asym_id' 13 9 'Structure model' '_atom_site.auth_atom_id' 14 9 'Structure model' '_atom_site.auth_comp_id' 15 9 'Structure model' '_atom_site.auth_seq_id' 16 9 'Structure model' '_atom_site.label_asym_id' 17 9 'Structure model' '_atom_site.label_atom_id' 18 9 'Structure model' '_atom_site.label_comp_id' 19 9 'Structure model' '_atom_site.label_entity_id' 20 9 'Structure model' '_atom_site.occupancy' 21 9 'Structure model' '_atom_site.type_symbol' 22 9 'Structure model' '_atom_site_anisotrop.U[1][1]' 23 9 'Structure model' '_atom_site_anisotrop.U[1][2]' 24 9 'Structure model' '_atom_site_anisotrop.U[1][3]' 25 9 'Structure model' '_atom_site_anisotrop.U[2][2]' 26 9 'Structure model' '_atom_site_anisotrop.U[2][3]' 27 9 'Structure model' '_atom_site_anisotrop.U[3][3]' 28 9 'Structure model' '_atom_site_anisotrop.pdbx_auth_asym_id' 29 9 'Structure model' '_atom_site_anisotrop.pdbx_auth_atom_id' 30 9 'Structure model' '_atom_site_anisotrop.pdbx_auth_comp_id' 31 9 'Structure model' '_atom_site_anisotrop.pdbx_auth_seq_id' 32 9 'Structure model' '_atom_site_anisotrop.pdbx_label_asym_id' 33 9 'Structure model' '_atom_site_anisotrop.pdbx_label_atom_id' 34 9 'Structure model' '_atom_site_anisotrop.pdbx_label_comp_id' 35 9 'Structure model' '_atom_site_anisotrop.type_symbol' 36 9 'Structure model' '_chem_comp.name' 37 9 'Structure model' '_chem_comp.type' 38 9 'Structure model' '_pdbx_database_status.status_code_sf' 39 9 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 40 9 'Structure model' '_pdbx_struct_special_symmetry.label_asym_id' 41 9 'Structure model' '_struct_conn.pdbx_dist_value' 42 9 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 43 9 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 44 9 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 45 9 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 46 9 'Structure model' '_struct_conn.ptnr1_label_asym_id' 47 9 'Structure model' '_struct_conn.ptnr1_label_atom_id' 48 9 'Structure model' '_struct_conn.ptnr1_label_comp_id' 49 9 'Structure model' '_struct_conn.ptnr1_label_seq_id' 50 9 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 51 9 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 52 9 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 53 9 'Structure model' '_struct_conn.ptnr2_label_asym_id' 54 9 'Structure model' '_struct_conn.ptnr2_label_atom_id' 55 9 'Structure model' '_struct_conn.ptnr2_label_comp_id' 56 9 'Structure model' '_struct_conn.ptnr2_label_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SHELXL-97 refinement . ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 SHELXD phasing . ? 4 SHARP phasing . ? 5 DM phasing . ? 6 # _pdbx_entry_details.entry_id 1HHF _pdbx_entry_details.compound_details ;DECAPLANIN IS A TRICYCLIC GLYCOPEPTIDE. HERE, DECAPLANIN IS REPRESENTED BY GROUPING TOGETHER THE SEQUENCE (SEQRES) AND THE THREE LIGANDS (HET) BGC, ERE AND RAM. GROUP: 1 NAME: DECAPLANIN CHAIN: A, B, C, D COMPONENT_1: PEPTIDE LIKE SEQUENCE RESIDUES 1 TO 7 COMPONENT_2: SUGAR RESIDUES 8, 9 AND 10 DESCRIPTION: DECAPLANIN IS A TRICYCLIC GLYCOPEPTIDE. THE SCAFFOLD IS A HEPTAPEPTIDE WITH THE CONFIGURATION D-D-L-D-D-L-L, GLYCOSYLATED BY A MONOSACCHARIDE AND A DISACCHARIDE ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASN _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 3 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -120.68 _pdbx_validate_torsion.psi -52.14 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero E 2 BGC 1 E BGC 1 A BGC 9 n E 2 RAM 2 E RAM 2 A RAM 10 n F 2 BGC 1 F BGC 1 B BGC 9 n F 2 RAM 2 F RAM 2 B RAM 10 n G 2 BGC 1 G BGC 1 C BGC 9 n G 2 RAM 2 G RAM 2 C RAM 10 n H 2 BGC 1 H BGC 1 D BGC 9 n H 2 RAM 2 H RAM 2 D RAM 10 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BGC 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpb BGC 'COMMON NAME' GMML 1.0 b-D-glucopyranose BGC 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Glcp BGC 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Glc RAM 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 LRhapa RAM 'COMMON NAME' GMML 1.0 a-L-rhamnopyranose RAM 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-L-Rhap RAM 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Rha # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 LRhapa1-2DGlcpb1-ROH 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/2,2,1/[a2122h-1b_1-5][a2211m-1a_1-5]/1-2/a2-b1' WURCS PDB2Glycan 1.1.0 3 2 '[][D-1-deoxy-Glcp]{[(2+1)][a-L-Rhap]{}}' LINUCS PDB-CARE ? # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.comp_id_1 RAM _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_2 BGC _pdbx_entity_branch_link.atom_id_2 O2 _pdbx_entity_branch_link.leaving_atom_id_2 HO2 _pdbx_entity_branch_link.value_order sing _pdbx_entity_branch_link.details ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 BGC 1 n 2 RAM 2 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 4-epi-vancosamine ERE 4 'CHLORIDE ION' CL 5 'PHOSPHATE ION' PO4 6 water HOH #