HEADER MOLECULAR CHAPERONE 22-DEC-00 1HHN TITLE CALRETICULIN P-DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: CALRETICULIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: P-DOMAIN RESIDUES 189-288; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 CELLULAR_LOCATION: ENDOPLASMIC RETICULUM; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PRSET A KEYWDS MOLECULAR CHAPERONE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR L.ELLGAARD,R.RIEK,T.HERRMANN,P.GUNTERT,D.BRAUN,A.HELENIUS,K.WUTHRICH REVDAT 4 15-MAY-24 1HHN 1 REMARK REVDAT 3 24-FEB-09 1HHN 1 VERSN REVDAT 2 26-FEB-02 1HHN 1 COMPND MODEL REVDAT 1 08-MAR-01 1HHN 0 JRNL AUTH L.ELLGAARD,R.RIEK,T.HERRMANN,D.BRAUN,P.GUNTERT,A.HELENIUS, JRNL AUTH 2 K.WUTHRICH JRNL TITL NMR STRUCTURE OF THE CALRETICULIN P-DOMAIN JRNL REF PROC.NATL.ACAD.SCI.USA V. 98 3133 2001 JRNL REFN ISSN 0027-8424 JRNL PMID 11248044 JRNL DOI 10.1073/PNAS.051630098 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH L.ELLGAARD,R.RIEK,D.BRAUN,T.HERRMANN,A.HELENIUS,K.WUTHRICH REMARK 1 TITL THREE-DIMENSIONAL STRUCTURE TOPOLOGY OF THE CALRETICULIN REMARK 1 TITL 2 P-DOMAIN BASED ON NMR ASSIGNMENT REMARK 1 REF FEBS LETT. V. 488 69 2000 REMARK 1 REFN ISSN 0014-5793 REMARK 1 PMID 11163798 REMARK 1 DOI 10.1016/S0014-5793(00)02382-6 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : OPALP REMARK 3 AUTHORS : KORADI, BILLETER, GUNTERT REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1HHN COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-DEC-00. REMARK 100 THE DEPOSITION ID IS D_1290005723. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 6.3 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY; COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : DYANA REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 4 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 9 TYR A 254 CB - CG - CD2 ANGL. DEV. = -4.0 DEGREES REMARK 500 16 MET A 240 CA - CB - CG ANGL. DEV. = 11.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 190 105.92 54.81 REMARK 500 1 ASP A 201 36.04 95.34 REMARK 500 1 ARG A 205 -52.96 -168.91 REMARK 500 1 ALA A 206 -50.68 71.89 REMARK 500 1 ASP A 209 -145.74 -104.30 REMARK 500 1 ASP A 213 -95.37 -84.10 REMARK 500 1 SER A 214 146.97 65.02 REMARK 500 1 PRO A 216 -165.45 -63.33 REMARK 500 1 ASP A 218 2.65 -50.05 REMARK 500 1 ASP A 220 60.41 -67.30 REMARK 500 1 ALA A 230 81.39 -64.87 REMARK 500 1 TRP A 244 -102.95 -80.58 REMARK 500 1 GLU A 245 63.54 154.91 REMARK 500 1 TYR A 254 107.91 -47.07 REMARK 500 1 GLU A 257 160.89 57.95 REMARK 500 1 PRO A 260 -70.22 -68.03 REMARK 500 1 ARG A 261 83.31 -162.57 REMARK 500 1 ASP A 267 126.01 72.40 REMARK 500 1 LYS A 269 -84.39 -87.44 REMARK 500 1 THR A 271 106.65 -45.54 REMARK 500 1 ILE A 273 87.73 159.55 REMARK 500 1 ASP A 278 82.67 -55.30 REMARK 500 1 ASN A 279 105.38 -36.95 REMARK 500 1 SER A 283 110.35 58.35 REMARK 500 1 ASP A 285 -9.33 -151.20 REMARK 500 2 LYS A 189 -129.82 28.88 REMARK 500 2 ALA A 196 9.87 -69.96 REMARK 500 2 TRP A 202 59.69 -140.66 REMARK 500 2 ASP A 203 -69.60 65.76 REMARK 500 2 ARG A 205 -65.50 -104.70 REMARK 500 2 ALA A 206 -59.81 71.83 REMARK 500 2 ASP A 210 108.89 -53.11 REMARK 500 2 ASP A 220 60.60 -61.96 REMARK 500 2 GLU A 243 -177.78 -171.41 REMARK 500 2 TRP A 244 -103.87 -84.70 REMARK 500 2 GLU A 245 77.78 152.26 REMARK 500 2 LYS A 255 -79.55 59.31 REMARK 500 2 GLU A 257 62.13 -157.98 REMARK 500 2 TRP A 258 62.00 37.80 REMARK 500 2 PRO A 260 -94.25 -71.16 REMARK 500 2 PRO A 266 44.98 -78.31 REMARK 500 2 ASP A 267 93.15 -169.04 REMARK 500 2 THR A 271 98.10 -46.60 REMARK 500 2 ILE A 273 85.12 173.25 REMARK 500 2 ASP A 278 95.16 -54.40 REMARK 500 2 SER A 283 78.70 40.32 REMARK 500 2 ALA A 286 1.84 97.08 REMARK 500 3 LYS A 189 -135.91 -78.35 REMARK 500 3 LYS A 190 102.68 -6.09 REMARK 500 3 ALA A 196 0.88 -64.89 REMARK 500 REMARK 500 THIS ENTRY HAS 490 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 200 ASP A 201 7 144.24 REMARK 500 GLY A 256 GLU A 257 7 -136.65 REMARK 500 PRO A 266 ASP A 267 7 -142.34 REMARK 500 SER A 188 LYS A 189 8 -148.69 REMARK 500 ILE A 273 HIS A 274 10 138.81 REMARK 500 LYS A 259 PRO A 260 14 145.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 TYR A 254 0.07 SIDE CHAIN REMARK 500 7 ARG A 261 0.09 SIDE CHAIN REMARK 500 9 ARG A 261 0.08 SIDE CHAIN REMARK 500 11 TYR A 268 0.09 SIDE CHAIN REMARK 500 12 ARG A 261 0.12 SIDE CHAIN REMARK 500 12 TYR A 268 0.08 SIDE CHAIN REMARK 500 19 ARG A 205 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR PROVIDED. DBREF 1HHN A 188 288 UNP P18418 CRTC_RAT 205 305 SEQADV 1HHN SER A 188 UNP P18418 PRO 205 CLONING ARTIFACT SEQRES 1 A 101 SER LYS LYS ILE LYS ASP PRO ASP ALA ALA LYS PRO GLU SEQRES 2 A 101 ASP TRP ASP GLU ARG ALA LYS ILE ASP ASP PRO THR ASP SEQRES 3 A 101 SER LYS PRO GLU ASP TRP ASP LYS PRO GLU HIS ILE PRO SEQRES 4 A 101 ASP PRO ASP ALA LYS LYS PRO GLU ASP TRP ASP GLU GLU SEQRES 5 A 101 MET ASP GLY GLU TRP GLU PRO PRO VAL ILE GLN ASN PRO SEQRES 6 A 101 GLU TYR LYS GLY GLU TRP LYS PRO ARG GLN ILE ASP ASN SEQRES 7 A 101 PRO ASP TYR LYS GLY THR TRP ILE HIS PRO GLU ILE ASP SEQRES 8 A 101 ASN PRO GLU TYR SER PRO ASP ALA ASN ILE HELIX 1 H1 GLU A 238 ASP A 241 5 4 SHEET 1 S1 2 LYS A 189 LYS A 192 0 SHEET 2 S1 2 GLU A 276 ASN A 279 -1 O ILE A 277 N ILE A 191 SHEET 1 S2 2 ALA A 206 ASP A 209 0 SHEET 2 S2 2 GLN A 262 ASN A 265 -1 O ILE A 263 N ILE A 208 SHEET 1 S3 2 GLU A 223 PRO A 226 0 SHEET 2 S3 2 VAL A 248 ASN A 251 -1 O ILE A 249 N ILE A 225 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1