HEADER VIRAL PROTEIN 06-DEC-98 1HHV TITLE SOLUTION STRUCTURE OF VIRUS CHEMOKINE VMIP-II COMPND MOL_ID: 1; COMPND 2 MOLECULE: VIRUS CHEMOKINE VMIP-II; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ORF K4; VMIP-II; MACROPHAGE INFLAMMATORY PROTEIN 1-ALPHA COMPND 5 HOMOLOG; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: SEQUENCE FROM HUMAN HERPESVIRUS 8 KEYWDS VMIP-II, VIRUS CHEMOKINE, KSHV(HUMAN HERPESVIRUS 8), RECEPTOR KEYWDS 2 BINDING, VIRAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 25 AUTHOR W.SHAO,E.FERNANDEZ,J.M.NAVENOT,J.WILKEN,D.A.THOMPSON,S.PEPIPER, AUTHOR 2 B.I.SCHWEITZER,E.LOLIS REVDAT 5 30-OCT-24 1HHV 1 REMARK REVDAT 4 27-DEC-23 1HHV 1 LINK REVDAT 3 24-JAN-18 1HHV 1 JRNL REMARK REVDAT 2 24-FEB-09 1HHV 1 VERSN REVDAT 1 16-SEP-03 1HHV 0 JRNL AUTH W.SHAO,E.FERNANDEZ,A.SACHPATZIDIS,J.WILKEN,D.A.THOMPSON, JRNL AUTH 2 B.I.SCHWEITZER,E.LOLIS JRNL TITL CCR2 AND CCR5 RECEPTOR-BINDING PROPERTIES OF HERPESVIRUS-8 JRNL TITL 2 VMIP-II BASED ON SEQUENCE ANALYSIS AND ITS SOLUTION JRNL TITL 3 STRUCTURE JRNL REF EUR.J.BIOCHEM. V. 268 2948 2001 JRNL REFN ISSN 0014-2956 JRNL PMID 11358512 JRNL DOI 10.1046/J.1432-1327.2001.02184.X REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH W.SHAO,E.FERNANDEZ,J.WILKEN,D.A.THOMPSON,M.A.SIANI,J.WEST, REMARK 1 AUTH 2 E.LOLIS,B.I.SCHWEITZER REMARK 1 TITL ACCESSIBILITY OF SELENOMETHIONINE PROTEINS BY TOTAL CHEMICAL REMARK 1 TITL 2 SYNTHESIS: STRUCTURAL STUDIES OF HUMAN HERPESVIRUS-8 MIP-II REMARK 1 REF FEBS LETT. V. 441 77 1998 REMARK 1 REFN ISSN 0014-5793 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1HHV COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-DEC-98. REMARK 100 THE DEPOSITION ID IS D_1000000228. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 308 REMARK 210 PH : 3.25 REMARK 210 IONIC STRENGTH : 50 MM REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY; TOCSY; HSQC; DQF-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : UNITYPLUS REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR 3.851 REMARK 210 METHOD USED : TORSIONAL ANGLE MOLECULAR REMARK 210 DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 80 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 25 REMARK 210 CONFORMERS, SELECTION CRITERIA : LEAST RESTRAINT VIOLATION AND REMARK 210 LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: REMARK 210 THE STRUCTURES WERE DETERMINED USING TWO- DIMENSIONAL HOMO- AND REMARK 210 HETERO-NUCLEAR REMARK 210 NMR SPECTROSCOPY. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (RES=RESIDUE NAME; REMARK 470 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 470 MODELS 1-25 REMARK 470 RES CSSEQI ATOMS REMARK 470 ARG A 74 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H GLN A 19 O CYS A 54 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 2 -50.72 -158.87 REMARK 500 1 THR A 3 -147.67 48.57 REMARK 500 1 LEU A 4 -86.88 -98.59 REMARK 500 1 ALA A 6 109.79 -58.03 REMARK 500 1 SER A 7 -33.83 -144.64 REMARK 500 1 TRP A 8 -169.77 -77.10 REMARK 500 1 ARG A 10 82.20 56.68 REMARK 500 1 PRO A 11 -159.56 -74.42 REMARK 500 1 ASP A 12 -98.10 -163.75 REMARK 500 1 CYS A 14 -33.60 -158.31 REMARK 500 1 CYS A 15 -176.79 -171.57 REMARK 500 1 TYR A 18 126.65 178.64 REMARK 500 1 SER A 29 -73.95 -96.10 REMARK 500 1 TYR A 32 134.64 -170.35 REMARK 500 1 LYS A 40 96.20 -169.12 REMARK 500 1 THR A 47 -156.72 -61.52 REMARK 500 1 ARG A 49 -82.17 -122.36 REMARK 500 1 VAL A 71 80.89 -69.71 REMARK 500 1 THR A 72 160.90 -38.10 REMARK 500 1 ALA A 73 174.47 176.30 REMARK 500 2 ASP A 2 -79.32 -57.18 REMARK 500 2 THR A 3 175.32 51.06 REMARK 500 2 SER A 7 -86.21 -69.39 REMARK 500 2 CYS A 14 -159.50 -160.84 REMARK 500 2 CYS A 15 177.17 -44.55 REMARK 500 2 LEU A 16 21.84 -76.95 REMARK 500 2 SER A 29 -69.31 -96.07 REMARK 500 2 SER A 35 -139.17 -86.04 REMARK 500 2 GLN A 36 23.63 -143.52 REMARK 500 2 CYS A 38 -166.89 -57.70 REMARK 500 2 THR A 47 -150.57 -63.77 REMARK 500 2 ARG A 49 -77.82 -124.52 REMARK 500 2 VAL A 71 79.39 -59.96 REMARK 500 2 THR A 72 135.73 -38.57 REMARK 500 3 ASP A 2 72.11 54.89 REMARK 500 3 THR A 3 103.13 -165.46 REMARK 500 3 LEU A 4 -30.79 -177.37 REMARK 500 3 ALA A 6 99.36 51.83 REMARK 500 3 SER A 7 31.35 -95.54 REMARK 500 3 LYS A 13 -154.30 -57.98 REMARK 500 3 CYS A 14 -76.19 -84.06 REMARK 500 3 TYR A 18 126.90 178.85 REMARK 500 3 SER A 29 -73.47 -96.83 REMARK 500 3 LYS A 40 89.88 -177.37 REMARK 500 3 PRO A 41 -167.80 -70.83 REMARK 500 3 THR A 47 -155.21 -60.01 REMARK 500 3 ARG A 49 -76.61 -121.34 REMARK 500 3 VAL A 71 76.79 -60.80 REMARK 500 3 THR A 72 164.54 -40.93 REMARK 500 4 ASP A 2 -128.84 -126.28 REMARK 500 REMARK 500 THIS ENTRY HAS 377 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 21 0.32 SIDE CHAIN REMARK 500 1 ARG A 49 0.09 SIDE CHAIN REMARK 500 1 ARG A 51 0.25 SIDE CHAIN REMARK 500 1 ARG A 74 0.30 SIDE CHAIN REMARK 500 2 ARG A 10 0.32 SIDE CHAIN REMARK 500 2 ARG A 21 0.32 SIDE CHAIN REMARK 500 2 ARG A 49 0.20 SIDE CHAIN REMARK 500 2 ARG A 74 0.29 SIDE CHAIN REMARK 500 3 ARG A 10 0.23 SIDE CHAIN REMARK 500 3 ARG A 49 0.13 SIDE CHAIN REMARK 500 3 ARG A 51 0.17 SIDE CHAIN REMARK 500 3 ARG A 74 0.14 SIDE CHAIN REMARK 500 4 ARG A 10 0.31 SIDE CHAIN REMARK 500 4 ARG A 21 0.32 SIDE CHAIN REMARK 500 4 ARG A 49 0.30 SIDE CHAIN REMARK 500 4 ARG A 51 0.31 SIDE CHAIN REMARK 500 4 ARG A 74 0.32 SIDE CHAIN REMARK 500 5 ARG A 10 0.30 SIDE CHAIN REMARK 500 5 ARG A 21 0.16 SIDE CHAIN REMARK 500 5 ARG A 49 0.18 SIDE CHAIN REMARK 500 5 ARG A 51 0.28 SIDE CHAIN REMARK 500 5 ARG A 74 0.31 SIDE CHAIN REMARK 500 6 ARG A 10 0.29 SIDE CHAIN REMARK 500 6 ARG A 21 0.25 SIDE CHAIN REMARK 500 6 ARG A 49 0.26 SIDE CHAIN REMARK 500 6 ARG A 51 0.31 SIDE CHAIN REMARK 500 6 ARG A 74 0.29 SIDE CHAIN REMARK 500 7 ARG A 10 0.19 SIDE CHAIN REMARK 500 7 ARG A 21 0.15 SIDE CHAIN REMARK 500 7 ARG A 49 0.21 SIDE CHAIN REMARK 500 7 ARG A 51 0.22 SIDE CHAIN REMARK 500 7 ARG A 74 0.32 SIDE CHAIN REMARK 500 8 ARG A 10 0.32 SIDE CHAIN REMARK 500 8 ARG A 21 0.10 SIDE CHAIN REMARK 500 8 ARG A 49 0.28 SIDE CHAIN REMARK 500 8 ARG A 51 0.31 SIDE CHAIN REMARK 500 8 ARG A 74 0.32 SIDE CHAIN REMARK 500 9 ARG A 10 0.30 SIDE CHAIN REMARK 500 9 ARG A 21 0.32 SIDE CHAIN REMARK 500 9 ARG A 49 0.31 SIDE CHAIN REMARK 500 9 ARG A 51 0.13 SIDE CHAIN REMARK 500 9 ARG A 74 0.21 SIDE CHAIN REMARK 500 10 ARG A 10 0.14 SIDE CHAIN REMARK 500 10 ARG A 21 0.30 SIDE CHAIN REMARK 500 10 ARG A 49 0.19 SIDE CHAIN REMARK 500 10 ARG A 51 0.30 SIDE CHAIN REMARK 500 10 ARG A 74 0.19 SIDE CHAIN REMARK 500 11 ARG A 10 0.21 SIDE CHAIN REMARK 500 11 ARG A 21 0.11 SIDE CHAIN REMARK 500 11 ARG A 49 0.09 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 117 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1HHV A 1 74 UNP Q98157 VMI2_HHV8 21 94 SEQRES 1 A 74 GLY ASP THR LEU GLY ALA SER TRP HIS ARG PRO ASP LYS SEQRES 2 A 74 CYS CYS LEU GLY TYR GLN LYS ARG PRO LEU PRO GLN VAL SEQRES 3 A 74 LEU LEU SER SER TRP TYR PRO THR SER GLN LEU CYS SER SEQRES 4 A 74 LYS PRO GLY VAL ILE PHE LEU THR LYS ARG GLY ARG GLN SEQRES 5 A 74 VAL CYS ALA ASP LYS SER LYS ASP TRP VAL LYS LYS LEU SEQRES 6 A 74 MSE GLN GLN LEU PRO VAL THR ALA ARG MODRES 1HHV MSE A 66 MET SELENOMETHIONINE HET MSE A 66 17 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE C5 H11 N O2 SE HELIX 1 1 ASP A 60 GLN A 68 1 9 SHEET 1 A 3 SER A 30 PRO A 33 0 SHEET 2 A 3 VAL A 43 LEU A 46 0 SHEET 3 A 3 GLN A 52 ALA A 55 -1 N ALA A 55 O VAL A 43 SSBOND 1 CYS A 14 CYS A 38 1555 1555 2.02 SSBOND 2 CYS A 15 CYS A 54 1555 1555 2.02 LINK C LEU A 65 N MSE A 66 1555 1555 1.30 LINK C MSE A 66 N GLN A 67 1555 1555 1.31 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1