data_1HHZ # _entry.id 1HHZ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1HHZ PDBE EBI-5734 WWPDB D_1290005734 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 1GO6 unspecified 'CRYSTAL STRUCTURE OF BALHIMYCIN COMPLEXED WITH THE PEPTIDE LYS-DAL-DAL' PDB 1HHY unspecified 'CRYSTAL STRUCURE OF DEGLUCOBALHIMYCIN COMPLEXED WITH DAL-DAL' PDB 1HHU unspecified 'CRYSTAL STRUCTURE OF BALHIMYCIN COMPLEXED WITH DAL-DAL' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1HHZ _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2000-12-29 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Lehmann, C.' 1 'Bunkoczi, G.' 2 'Sheldrick, G.M.' 3 'Vertesy, L.' 4 # _citation.id primary _citation.title 'Structures of Glycopeptide Antibiotics with Peptides that Model Bacterial Cell-Wall Precursors' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 318 _citation.page_first 723 _citation.page_last ? _citation.year 2002 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 12054818 _citation.pdbx_database_id_DOI '10.1016/S0022-2836(02)00146-8' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Lehmann, C.' 1 ? primary 'Bunkoczi, G.' 2 ? primary 'Vertesy, L.' 3 ? primary 'Sheldrick, G.M.' 4 ? # _cell.entry_id 1HHZ _cell.length_a 48.290 _cell.length_b 48.290 _cell.length_c 39.300 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1HHZ _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn DEGLUCOBALHIMYCIN 1149.977 3 ? ? ? ? 2 polymer syn 'CELL WALL PEPTIDE' 489.542 3 ? ? ? ? 3 non-polymer man '(2R,4S,6S)-4-azanyl-4,6-dimethyl-oxane-2,5,5-triol' 177.198 3 ? ? ? ? 4 non-polymer syn R-1,2-PROPANEDIOL 76.094 4 ? ? ? ? 5 water nat water 18.015 95 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no yes '(MLU)(OMZ)N(GHP)(GHP)(OMY)(3FG)' XXNGGYX A,B,C ? 2 'polypeptide(L)' no yes '(DAL)(FGA)K(DAL)(DAL)' AEKAA D,E,F ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MLU n 1 2 OMZ n 1 3 ASN n 1 4 GHP n 1 5 GHP n 1 6 OMY n 1 7 3FG n 2 1 DAL n 2 2 FGA n 2 3 LYS n 2 4 DAL n 2 5 DAL n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample ? ? 'AMYCOLATOPSIS SP.' ? 37632 ? 2 1 sample ? ? 'synthetic construct' ? 32630 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 NOR NOR00707 1 ? ? NOR00707 ? 2 PDB 1HHZ 2 ? ? 1HHZ ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1HHZ A 1 ? 7 ? NOR00707 1 ? 7 ? 1 7 2 1 1HHZ B 1 ? 7 ? NOR00707 1 ? 7 ? 1 7 3 1 1HHZ C 1 ? 7 ? NOR00707 1 ? 7 ? 1 7 4 2 1HHZ D 1 ? 5 ? 1HHZ 1 ? 5 ? 1 5 5 2 1HHZ E 1 ? 5 ? 1HHZ 1 ? 5 ? 1 5 6 2 1HHZ F 1 ? 5 ? 1HHZ 1 ? 5 ? 1 5 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 3FG 'L-peptide linking' . '(2S)-amino(3,5-dihydroxyphenyl)ethanoic acid' ? 'C8 H9 N O4' 183.161 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 DAL 'D-peptide linking' . D-ALANINE ? 'C3 H7 N O2' 89.093 DVC 'L-saccharide, alpha linking' . '(2R,4S,6S)-4-azanyl-4,6-dimethyl-oxane-2,5,5-triol' ? 'C7 H15 N O4' 177.198 FGA 'D-gamma-peptide, C-delta linking' . 'GAMMA-D-GLUTAMIC ACID' 'D-GLUTAMIC ACID' 'C5 H9 N O4' 147.129 GHP 'D-peptide linking' . '(2R)-amino(4-hydroxyphenyl)ethanoic acid' ? 'C8 H9 N O3' 167.162 HOH non-polymer . WATER ? 'H2 O' 18.015 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MLU 'D-peptide linking' . N-methyl-D-leucine ? 'C7 H15 N O2' 145.199 OMY 'L-peptide linking' n '(betaR)-3-chloro-beta-hydroxy-L-tyrosine' ? 'C9 H10 Cl N O4' 231.633 OMZ 'D-peptide linking' . '(betaR)-3-CHLORO-BETA-HYDROXY-D-TYROSINE' ? 'C9 H10 Cl N O4' 231.633 PGR non-polymer . R-1,2-PROPANEDIOL ? 'C3 H8 O2' 76.094 # _exptl.entry_id 1HHZ _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.7 _exptl_crystal.density_percent_sol 38.1 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.00 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '0.3M CIT, PH=7, 30% 1,2-PROPANEDIOL, pH 7.00' # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 1999-03-15 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9114 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'EMBL/DESY, HAMBURG BEAMLINE X11' _diffrn_source.pdbx_synchrotron_site 'EMBL/DESY, HAMBURG' _diffrn_source.pdbx_synchrotron_beamline X11 _diffrn_source.pdbx_wavelength 0.9114 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 1HHZ _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 41.850 _reflns.d_resolution_high 0.990 _reflns.number_obs 29932 _reflns.number_all ? _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs 0.05300 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 7.500 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 0.99 _reflns_shell.d_res_low 1.10 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.19000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 7.50 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 1HHZ _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all 29932 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 41.85 _refine.ls_d_res_high 0.99 _refine.ls_percent_reflns_obs 99.9 _refine.ls_R_factor_obs 0.1075 _refine.ls_R_factor_all 0.1083 _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free 0.1403 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 1529 _refine.ls_number_parameters 4237 _refine.ls_number_restraints 4905 _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'METHOD USED: MOEWS & KRETSINGER, J.MOL.BIOL.91(1973)201-228' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'DIRECT METHODS' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'ENGH AND HUBER' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details SHELLS _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.entry_id 1HHZ _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues 6 _refine_analyze.occupancy_sum_hydrogen 280.80 _refine_analyze.occupancy_sum_non_hydrogen 448.50 # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 320 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 53 _refine_hist.number_atoms_solvent 95 _refine_hist.number_atoms_total 468 _refine_hist.d_res_high 0.99 _refine_hist.d_res_low 41.85 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function s_bond_d 0.021 ? ? ? 'X-RAY DIFFRACTION' ? s_angle_d 0.032 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_dist 0.027 ? ? ? 'X-RAY DIFFRACTION' ? s_from_restr_planes 0.086 ? ? ? 'X-RAY DIFFRACTION' ? s_zero_chiral_vol 0.084 ? ? ? 'X-RAY DIFFRACTION' ? s_non_zero_chiral_vol 0.190 ? ? ? 'X-RAY DIFFRACTION' ? s_anti_bump_dis_restr 0.085 ? ? ? 'X-RAY DIFFRACTION' ? s_rigid_bond_adp_cmpnt 0.005 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_adp_cmpnt 0.027 ? ? ? 'X-RAY DIFFRACTION' ? s_approx_iso_adps 0.126 ? ? ? 'X-RAY DIFFRACTION' ? # _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.entry_id 1HHZ _pdbx_refine.R_factor_all_no_cutoff 0.1083 _pdbx_refine.R_factor_obs_no_cutoff 0.1075 _pdbx_refine.free_R_factor_no_cutoff 0.1403 _pdbx_refine.free_R_error_no_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff 5.1 _pdbx_refine.free_R_val_test_set_ct_no_cutoff 1529 _pdbx_refine.R_factor_all_4sig_cutoff 0.1031 _pdbx_refine.R_factor_obs_4sig_cutoff 0.1022 _pdbx_refine.free_R_factor_4sig_cutoff 0.1354 _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff 5.2 _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff 1413 _pdbx_refine.number_reflns_obs_4sig_cutoff 27252 # loop_ _struct_ncs_oper.id _struct_ncs_oper.code _struct_ncs_oper.details _struct_ncs_oper.matrix[1][1] _struct_ncs_oper.matrix[1][2] _struct_ncs_oper.matrix[1][3] _struct_ncs_oper.matrix[2][1] _struct_ncs_oper.matrix[2][2] _struct_ncs_oper.matrix[2][3] _struct_ncs_oper.matrix[3][1] _struct_ncs_oper.matrix[3][2] _struct_ncs_oper.matrix[3][3] _struct_ncs_oper.vector[1] _struct_ncs_oper.vector[2] _struct_ncs_oper.vector[3] 1 given ? -0.818060 -0.282480 -0.500970 0.274980 0.572940 -0.772090 0.505130 -0.769380 -0.391030 69.43897 18.29514 12.76565 2 given ? -0.784650 0.257220 0.564060 0.349730 -0.567600 0.745340 0.511870 0.782100 0.355410 40.43910 -24.31767 -7.14059 # _struct.entry_id 1HHZ _struct.title 'Deglucobalhimycin in complex with cell wall pentapeptide' _struct.pdbx_descriptor 'DEGLUCOBALHIMYCIN, CELL WALL PEPTIDE' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1HHZ _struct_keywords.pdbx_keywords ANTIBIOTIC/PEPTIDE _struct_keywords.text 'ANTIBIOTIC-PEPTIDE COMPLEX, GLYCOPEPTIDE, ANTIBIOTIC, CELL WALL PEPTIDE, BALHIMYCIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 3 ? H N N 4 ? I N N 4 ? J N N 3 ? K N N 4 ? L N N 3 ? M N N 4 ? N N N 5 ? O N N 5 ? P N N 5 ? Q N N 5 ? R N N 5 ? S N N 5 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A MLU 1 C ? ? ? 1_555 A OMZ 2 N ? ? A MLU 1 A OMZ 2 1_555 ? ? ? ? ? ? ? 1.354 ? ? covale2 covale both ? A OMZ 2 C ? ? ? 1_555 A ASN 3 N ? ? A OMZ 2 A ASN 3 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale3 covale none ? A OMZ 2 OH ? ? ? 1_555 A GHP 4 C3 ? ? A OMZ 2 A GHP 4 1_555 ? ? ? ? ? ? ? 1.387 ? ? covale4 covale both ? A ASN 3 C ? ? ? 1_555 A GHP 4 N ? ? A ASN 3 A GHP 4 1_555 ? ? ? ? ? ? ? 1.338 ? ? covale5 covale both ? A GHP 4 C ? ? ? 1_555 A GHP 5 N ? ? A GHP 4 A GHP 5 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale6 covale none ? A GHP 4 C5 ? ? ? 1_555 A OMY 6 OCZ ? ? A GHP 4 A OMY 6 1_555 ? ? ? ? ? ? ? 1.387 ? ? covale7 covale both ? A GHP 5 C ? ? ? 1_555 A OMY 6 N ? ? A GHP 5 A OMY 6 1_555 ? ? ? ? ? ? ? 1.346 ? ? covale8 covale none ? A GHP 5 C5 ? ? ? 1_555 A 3FG 7 CG1 ? ? A GHP 5 A 3FG 7 1_555 ? ? ? ? ? ? ? 1.489 ? ? covale9 covale both ? A OMY 6 C ? ? ? 1_555 A 3FG 7 N ? ? A OMY 6 A 3FG 7 1_555 ? ? ? ? ? ? ? 1.351 ? ? covale10 covale one ? A OMY 6 ODE ? ? ? 1_555 G DVC . C1 ? ? A OMY 6 A DVC 9 1_555 ? ? ? ? ? ? ? 1.424 ? ? covale11 covale both ? B MLU 1 C ? ? ? 1_555 B OMZ 2 N ? ? B MLU 1 B OMZ 2 1_555 ? ? ? ? ? ? ? 1.375 ? ? covale12 covale both ? B OMZ 2 C ? ? ? 1_555 B ASN 3 N ? ? B OMZ 2 B ASN 3 1_555 ? ? ? ? ? ? ? 1.304 ? ? covale13 covale none ? B OMZ 2 OH ? ? ? 1_555 B GHP 4 C3 ? ? B OMZ 2 B GHP 4 1_555 ? ? ? ? ? ? ? 1.391 ? ? covale14 covale both ? B ASN 3 C ? ? ? 1_555 B GHP 4 N ? ? B ASN 3 B GHP 4 1_555 ? ? ? ? ? ? ? 1.347 ? ? covale15 covale both ? B GHP 4 C ? ? ? 1_555 B GHP 5 N ? ? B GHP 4 B GHP 5 1_555 ? ? ? ? ? ? ? 1.344 ? ? covale16 covale none ? B GHP 4 C5 ? ? ? 1_555 B OMY 6 OCZ ? ? B GHP 4 B OMY 6 1_555 ? ? ? ? ? ? ? 1.399 ? ? covale17 covale both ? B GHP 5 C ? ? ? 1_555 B OMY 6 N ? ? B GHP 5 B OMY 6 1_555 ? ? ? ? ? ? ? 1.317 ? ? covale18 covale none ? B GHP 5 C5 ? ? ? 1_555 B 3FG 7 CG1 ? ? B GHP 5 B 3FG 7 1_555 ? ? ? ? ? ? ? 1.486 ? ? covale19 covale both ? B OMY 6 C ? ? ? 1_555 B 3FG 7 N ? ? B OMY 6 B 3FG 7 1_555 ? ? ? ? ? ? ? 1.314 ? ? covale20 covale one ? B OMY 6 ODE ? ? ? 1_555 J DVC . C1 ? ? B OMY 6 B DVC 9 1_555 ? ? ? ? ? ? ? 1.419 ? ? covale21 covale both ? C MLU 1 C ? ? ? 1_555 C OMZ 2 N ? ? C MLU 1 C OMZ 2 1_555 ? ? ? ? ? ? ? 1.382 ? ? covale22 covale both ? C OMZ 2 C ? ? ? 1_555 C ASN 3 N ? ? C OMZ 2 C ASN 3 1_555 ? ? ? ? ? ? ? 1.311 ? ? covale23 covale none ? C OMZ 2 OH ? ? ? 1_555 C GHP 4 C3 ? ? C OMZ 2 C GHP 4 1_555 ? ? ? ? ? ? ? 1.408 ? ? covale24 covale both ? C ASN 3 C ? ? ? 1_555 C GHP 4 N ? ? C ASN 3 C GHP 4 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale25 covale both ? C GHP 4 C ? ? ? 1_555 C GHP 5 N ? ? C GHP 4 C GHP 5 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale26 covale none ? C GHP 4 C5 ? ? ? 1_555 C OMY 6 OCZ ? ? C GHP 4 C OMY 6 1_555 ? ? ? ? ? ? ? 1.393 ? ? covale27 covale both ? C GHP 5 C ? ? ? 1_555 C OMY 6 N ? ? C GHP 5 C OMY 6 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale28 covale none ? C GHP 5 C5 ? ? ? 1_555 C 3FG 7 CG1 ? ? C GHP 5 C 3FG 7 1_555 ? ? ? ? ? ? ? 1.498 ? ? covale29 covale both ? C OMY 6 C ? ? ? 1_555 C 3FG 7 N ? ? C OMY 6 C 3FG 7 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale30 covale one ? C OMY 6 ODE ? ? ? 1_555 L DVC . C1 ? ? C OMY 6 C DVC 9 1_555 ? ? ? ? ? ? ? 1.392 ? ? covale31 covale both ? D FGA 2 CD ? ? ? 1_555 D LYS 3 N ? ? D FGA 2 D LYS 3 1_555 ? ? ? ? ? ? ? 1.448 ? ? covale32 covale both ? D LYS 3 C ? ? ? 1_555 D DAL 4 N ? ? D LYS 3 D DAL 4 1_555 ? ? ? ? ? ? ? 1.311 ? ? covale33 covale both ? D DAL 4 C ? ? ? 1_555 D DAL 5 N ? ? D DAL 4 D DAL 5 1_555 ? ? ? ? ? ? ? 1.302 ? ? covale34 covale both ? E DAL 1 C B ? ? 1_555 E FGA 2 N ? ? E DAL 1 E FGA 2 1_555 ? ? ? ? ? ? ? 1.451 ? ? covale35 covale both ? E DAL 1 C A ? ? 1_555 E FGA 2 N ? ? E DAL 1 E FGA 2 1_555 ? ? ? ? ? ? ? 1.362 ? ? covale36 covale both ? E FGA 2 CD ? ? ? 1_555 E LYS 3 N ? ? E FGA 2 E LYS 3 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale37 covale both ? E LYS 3 C ? ? ? 1_555 E DAL 4 N ? ? E LYS 3 E DAL 4 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale38 covale both ? E DAL 4 C ? ? ? 1_555 E DAL 5 N ? ? E DAL 4 E DAL 5 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale39 covale both ? F FGA 2 CD ? ? ? 1_555 F LYS 3 N ? ? F FGA 2 F LYS 3 1_555 ? ? ? ? ? ? ? 1.415 ? ? covale40 covale both ? F LYS 3 C ? ? ? 1_555 F DAL 4 N ? ? F LYS 3 F DAL 4 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale41 covale both ? F DAL 4 C ? ? ? 1_555 F DAL 5 N ? ? F DAL 4 F DAL 5 1_555 ? ? ? ? ? ? ? 1.338 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 GHP 5 A . ? GHP 5 A OMY 6 A ? OMY 6 A 1 10.12 2 GHP 5 B . ? GHP 5 B OMY 6 B ? OMY 6 B 1 -0.30 3 GHP 5 C . ? GHP 5 C OMY 6 C ? OMY 6 C 1 5.84 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 2 ? BA ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel BA 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 GHP A 4 ? GHP A 5 ? GHP A 4 GHP A 5 AA 2 DAL D 4 ? DAL D 5 ? DAL D 4 DAL D 5 BA 1 GHP B 4 ? GHP B 5 ? GHP B 4 GHP B 5 BA 2 DAL E 4 ? DAL E 5 ? DAL E 4 DAL E 5 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N GHP A 4 ? N GHP A 4 O DAL D 5 ? O DAL D 5 BA 1 2 N GHP B 4 ? N GHP B 4 O DAL E 5 ? O DAL E 5 # _database_PDB_matrix.entry_id 1HHZ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1HHZ _atom_sites.fract_transf_matrix[1][1] 0.020708 _atom_sites.fract_transf_matrix[1][2] 0.011956 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023912 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.025445 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N O # loop_ _database_PDB_caveat.id _database_PDB_caveat.text 1 'DAL E 1 HAS WRONG CHIRALITY AT ATOM CA' 2 'DAL E 1 C-ALPHA WRONG HAND DAL E 1 C-ALPHA WRONG HAND' # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MLU 1 1 1 MLU MLU A . n A 1 2 OMZ 2 2 2 OMZ OMZ A . n A 1 3 ASN 3 3 3 ASN ASN A . n A 1 4 GHP 4 4 4 GHP GHP A . n A 1 5 GHP 5 5 5 GHP GHP A . n A 1 6 OMY 6 6 6 OMY OMY A . n A 1 7 3FG 7 7 7 3FG 3FG A . n B 1 1 MLU 1 1 1 MLU MLU B . n B 1 2 OMZ 2 2 2 OMZ OMZ B . n B 1 3 ASN 3 3 3 ASN ASN B . n B 1 4 GHP 4 4 4 GHP GHP B . n B 1 5 GHP 5 5 5 GHP GHP B . n B 1 6 OMY 6 6 6 OMY OMY B . n B 1 7 3FG 7 7 7 3FG 3FG B . n C 1 1 MLU 1 1 1 MLU MLU C . n C 1 2 OMZ 2 2 2 OMZ OMZ C . n C 1 3 ASN 3 3 3 ASN ASN C . n C 1 4 GHP 4 4 4 GHP GHP C . n C 1 5 GHP 5 5 5 GHP GHP C . n C 1 6 OMY 6 6 6 OMY OMY C . n C 1 7 3FG 7 7 7 3FG 3FG C . n D 2 1 DAL 1 1 ? ? ? D . n D 2 2 FGA 2 2 2 FGA FGA D . n D 2 3 LYS 3 3 3 LYS LYS D . n D 2 4 DAL 4 4 4 DAL DAL D . n D 2 5 DAL 5 5 5 DAL DAL D . n E 2 1 DAL 1 1 1 DAL DAL E . n E 2 2 FGA 2 2 2 FGA FGA E . n E 2 3 LYS 3 3 3 LYS LYS E . n E 2 4 DAL 4 4 4 DAL DAL E . n E 2 5 DAL 5 5 5 DAL DAL E . n F 2 1 DAL 1 1 ? ? ? F . n F 2 2 FGA 2 2 2 FGA FGA F . n F 2 3 LYS 3 3 3 LYS LYS F . n F 2 4 DAL 4 4 4 DAL DAL F . n F 2 5 DAL 5 5 5 DAL DAL F . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 DVC 1 9 9 DVC DVC A . H 4 PGR 1 1001 1001 PGR PGR A . I 4 PGR 1 1002 1002 PGR PGR A . J 3 DVC 1 9 9 DVC DVC B . K 4 PGR 1 1001 1001 PGR PGR B . L 3 DVC 1 9 9 DVC DVC C . M 4 PGR 1 1001 1001 PGR PGR C . N 5 HOH 1 2001 2001 HOH HOH A . N 5 HOH 2 2002 2002 HOH HOH A . N 5 HOH 3 2003 2003 HOH HOH A . N 5 HOH 4 2004 2004 HOH HOH A . N 5 HOH 5 2005 2005 HOH HOH A . N 5 HOH 6 2006 2006 HOH HOH A . N 5 HOH 7 2007 2007 HOH HOH A . N 5 HOH 8 2008 2008 HOH HOH A . N 5 HOH 9 2009 2009 HOH HOH A . N 5 HOH 10 2010 2010 HOH HOH A . N 5 HOH 11 2011 2011 HOH HOH A . N 5 HOH 12 2012 2012 HOH HOH A . N 5 HOH 13 2013 2013 HOH HOH A . N 5 HOH 14 2014 2014 HOH HOH A . N 5 HOH 15 2015 2015 HOH HOH A . N 5 HOH 16 2016 2016 HOH HOH A . N 5 HOH 17 2017 2017 HOH HOH A . N 5 HOH 18 2018 2018 HOH HOH A . N 5 HOH 19 2019 2019 HOH HOH A . N 5 HOH 20 2020 2020 HOH HOH A . N 5 HOH 21 2021 2021 HOH HOH A . N 5 HOH 22 2022 2022 HOH HOH A . N 5 HOH 23 2023 2023 HOH HOH A . N 5 HOH 24 2024 2024 HOH HOH A . N 5 HOH 25 2025 2025 HOH HOH A . O 5 HOH 1 2001 2001 HOH HOH B . O 5 HOH 2 2002 2002 HOH HOH B . O 5 HOH 3 2003 2003 HOH HOH B . O 5 HOH 4 2004 2004 HOH HOH B . O 5 HOH 5 2005 2005 HOH HOH B . O 5 HOH 6 2006 2006 HOH HOH B . O 5 HOH 7 2007 2007 HOH HOH B . O 5 HOH 8 2008 2008 HOH HOH B . O 5 HOH 9 2009 2009 HOH HOH B . O 5 HOH 10 2010 2010 HOH HOH B . O 5 HOH 11 2011 2011 HOH HOH B . O 5 HOH 12 2012 2012 HOH HOH B . O 5 HOH 13 2013 2013 HOH HOH B . O 5 HOH 14 2014 2014 HOH HOH B . O 5 HOH 15 2015 2015 HOH HOH B . O 5 HOH 16 2016 2016 HOH HOH B . O 5 HOH 17 2017 2017 HOH HOH B . O 5 HOH 18 2018 2018 HOH HOH B . O 5 HOH 19 2019 2019 HOH HOH B . O 5 HOH 20 2020 2020 HOH HOH B . O 5 HOH 21 2021 2021 HOH HOH B . O 5 HOH 22 2022 2022 HOH HOH B . O 5 HOH 23 2023 2023 HOH HOH B . O 5 HOH 24 2024 2024 HOH HOH B . O 5 HOH 25 2025 2025 HOH HOH B . O 5 HOH 26 2026 2026 HOH HOH B . O 5 HOH 27 2027 2027 HOH HOH B . O 5 HOH 28 2028 2028 HOH HOH B . O 5 HOH 29 2029 2029 HOH HOH B . P 5 HOH 1 2001 2001 HOH HOH C . P 5 HOH 2 2002 2002 HOH HOH C . P 5 HOH 3 2003 2003 HOH HOH C . P 5 HOH 4 2004 2004 HOH HOH C . P 5 HOH 5 2005 2005 HOH HOH C . P 5 HOH 6 2006 2006 HOH HOH C . P 5 HOH 7 2007 2007 HOH HOH C . P 5 HOH 8 2008 2008 HOH HOH C . P 5 HOH 9 2009 2009 HOH HOH C . P 5 HOH 10 2010 2010 HOH HOH C . P 5 HOH 11 2011 2011 HOH HOH C . P 5 HOH 12 2012 2012 HOH HOH C . P 5 HOH 13 2013 2013 HOH HOH C . P 5 HOH 14 2014 2014 HOH HOH C . P 5 HOH 15 2015 2015 HOH HOH C . P 5 HOH 16 2016 2016 HOH HOH C . P 5 HOH 17 2017 2017 HOH HOH C . P 5 HOH 18 2018 2018 HOH HOH C . Q 5 HOH 1 2001 2001 HOH HOH D . Q 5 HOH 2 2002 2002 HOH HOH D . Q 5 HOH 3 2003 2003 HOH HOH D . Q 5 HOH 4 2004 2004 HOH HOH D . Q 5 HOH 5 2005 2005 HOH HOH D . Q 5 HOH 6 2006 2006 HOH HOH D . Q 5 HOH 7 2007 2007 HOH HOH D . Q 5 HOH 8 2008 2008 HOH HOH D . R 5 HOH 1 2001 2001 HOH HOH E . R 5 HOH 2 2002 2002 HOH HOH E . R 5 HOH 3 2003 2003 HOH HOH E . R 5 HOH 4 2004 2004 HOH HOH E . R 5 HOH 5 2005 2005 HOH HOH E . R 5 HOH 6 2006 2006 HOH HOH E . R 5 HOH 7 2007 2007 HOH HOH E . R 5 HOH 8 2008 2008 HOH HOH E . R 5 HOH 9 2009 2009 HOH HOH E . R 5 HOH 10 2010 2010 HOH HOH E . R 5 HOH 11 2011 2011 HOH HOH E . S 5 HOH 1 2001 2001 HOH HOH F . S 5 HOH 2 2002 2002 HOH HOH F . S 5 HOH 3 2003 2003 HOH HOH F . S 5 HOH 4 2004 2004 HOH HOH F . # _pdbx_molecule_features.prd_id PRD_000485 _pdbx_molecule_features.name Deglucobalhimycin _pdbx_molecule_features.type Glycopeptide _pdbx_molecule_features.class 'Antibiotic, Antimicrobial' _pdbx_molecule_features.details ;DEGLUCOBALHIMYCIN LACKS THE D-GLUCOSE COMPONENT OF BALHIMYCIN CONSISTING OF THE TRICYCLIC HEPTAPEPTIDE AND (2R,4S,6S)-4-AZANYL-4,6-DIMETHYL-OXANE-2,5,5-TRIOL ONLY LINKED TO RESIDUE 6. ; # loop_ _pdbx_molecule.instance_id _pdbx_molecule.prd_id _pdbx_molecule.asym_id 1 PRD_000485 A 1 PRD_000485 G 2 PRD_000485 B 2 PRD_000485 J 3 PRD_000485 C 3 PRD_000485 L # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A OMY 6 A OMY 6 ? TYR ? 2 B OMY 6 B OMY 6 ? TYR ? 3 C OMY 6 C OMY 6 ? TYR ? # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 software_defined_assembly PISA tetrameric 4 2 software_defined_assembly PISA tetrameric 4 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 B,C,E,F,J,K,L,M,O,P,R,S 2 1,2 A,D,G,H,I,N,Q # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1390 ? 1 MORE -6.4 ? 1 'SSA (A^2)' 3270 ? 2 'ABSA (A^2)' 2240 ? 2 MORE -15.8 ? 2 'SSA (A^2)' 2280 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 5_556 x-y,-y,-z+4/3 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 52.4000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 2006 ? N HOH . 2 1 F HOH 2001 ? S HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2003-09-05 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2012-07-25 4 'Structure model' 1 3 2012-11-30 5 'Structure model' 2 0 2019-04-24 6 'Structure model' 2 1 2019-07-10 7 'Structure model' 2 2 2019-07-24 8 'Structure model' 2 3 2019-10-09 9 'Structure model' 2 4 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 9 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Atomic model' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' 'Structure summary' 5 2 'Structure model' 'Version format compliance' 6 3 'Structure model' 'Atomic model' 7 3 'Structure model' 'Derived calculations' 8 3 'Structure model' 'Non-polymer description' 9 3 'Structure model' Other 10 4 'Structure model' Other 11 5 'Structure model' Advisory 12 5 'Structure model' 'Data collection' 13 5 'Structure model' 'Derived calculations' 14 5 'Structure model' Other 15 5 'Structure model' 'Polymer sequence' 16 6 'Structure model' 'Data collection' 17 7 'Structure model' 'Data collection' 18 8 'Structure model' 'Data collection' 19 8 'Structure model' Other 20 8 'Structure model' 'Source and taxonomy' 21 9 'Structure model' Advisory 22 9 'Structure model' 'Data collection' 23 9 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' chem_comp 2 5 'Structure model' diffrn_source 3 5 'Structure model' entity_poly 4 5 'Structure model' pdbx_database_proc 5 5 'Structure model' pdbx_database_status 6 5 'Structure model' pdbx_seq_map_depositor_info 7 5 'Structure model' pdbx_validate_polymer_linkage 8 5 'Structure model' struct_conn 9 6 'Structure model' diffrn_source 10 7 'Structure model' chem_comp 11 7 'Structure model' diffrn_source 12 8 'Structure model' pdbx_database_status 13 8 'Structure model' pdbx_entity_src_syn 14 9 'Structure model' chem_comp 15 9 'Structure model' database_PDB_caveat 16 9 'Structure model' struct_conn 17 9 'Structure model' struct_site 18 9 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_chem_comp.type' 2 5 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 3 5 'Structure model' '_entity_poly.pdbx_seq_one_letter_code_can' 4 5 'Structure model' '_pdbx_database_status.recvd_author_approval' 5 5 'Structure model' '_pdbx_seq_map_depositor_info.one_letter_code' 6 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 7 6 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 8 7 'Structure model' '_chem_comp.type' 9 7 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 10 8 'Structure model' '_pdbx_database_status.status_code_sf' 11 9 'Structure model' '_chem_comp.type' 12 9 'Structure model' '_struct_conn.pdbx_dist_value' 13 9 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 14 9 'Structure model' '_struct_conn.ptnr1_label_atom_id' 15 9 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 16 9 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 17 9 'Structure model' '_struct_conn.ptnr2_label_asym_id' 18 9 'Structure model' '_struct_conn.ptnr2_label_atom_id' 19 9 'Structure model' '_struct_conn.ptnr2_label_comp_id' 20 9 'Structure model' '_struct_conn.ptnr2_label_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SHELXL-97 refinement . ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 SHELX phasing . ? 4 # _pdbx_entry_details.entry_id 1HHZ _pdbx_entry_details.compound_details ;BALHIMYCIN IS A TRICYCLIC GLYCOPEPTIDE. THE SCAFFOLD IS A HEPTAPEPTIDE WITH THE CONFIGURATION D-D-L-D-D-L-L. IT IS FURTHER GLYCOSYLATED BY TWO MONOSACCHARIDES: A D-GLUCOSE AND A 4-OXO-VANCOSAMINE. HERE, DEGLUCOBALHIMYCIN IS REPRESENTED GROUPING TOGETHER THE SEQUENCE (SEQRES) AND ONE LIGAND (HET) DVC. GROUP: 1 NAME: DEGLUCOBALHIMYCIN CHAIN: A, B, C COMPONENT_1: PEPTIDE LIKE SEQUENCE RESIDUES 1 TO 7 COMPONENT_2: SUGAR RESIDUES 9 DESCRIPTION: DEGLUCOBALHIMYCIN LACKS THE D-GLUCOSE COMPONENT OF BALHIMYCIN CONSISTING OF THE TRICYCLIC HEPTAPEPTIDE AND 4-OXO-VANCOSAMINE ONLY, LINKED TO RESIDUE 6. ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASN _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 3 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -120.78 _pdbx_validate_torsion.psi -56.01 # loop_ _pdbx_validate_chiral.id _pdbx_validate_chiral.PDB_model_num _pdbx_validate_chiral.auth_atom_id _pdbx_validate_chiral.label_alt_id _pdbx_validate_chiral.auth_asym_id _pdbx_validate_chiral.auth_comp_id _pdbx_validate_chiral.auth_seq_id _pdbx_validate_chiral.PDB_ins_code _pdbx_validate_chiral.details _pdbx_validate_chiral.omega 1 1 CA A E DAL 1 ? 'WRONG HAND' . 2 1 CA B E DAL 1 ? 'WRONG HAND' . # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id B _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 2004 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 6.01 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 D FGA 2 ? N ? D FGA 2 N 2 1 Y 1 D FGA 2 ? CA ? D FGA 2 CA 3 1 Y 1 D FGA 2 ? C ? D FGA 2 C 4 1 Y 1 D FGA 2 ? O ? D FGA 2 O 5 1 Y 1 D FGA 2 ? CB ? D FGA 2 CB 6 1 Y 1 D LYS 3 ? CD ? D LYS 3 CD 7 1 Y 1 D LYS 3 ? CE ? D LYS 3 CE 8 1 Y 1 D LYS 3 ? NZ ? D LYS 3 NZ 9 1 Y 1 F FGA 2 ? C ? F FGA 2 C 10 1 Y 1 F FGA 2 ? O ? F FGA 2 O # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 D DAL 1 ? D DAL 1 2 1 Y 1 F DAL 1 ? F DAL 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 '(2R,4S,6S)-4-azanyl-4,6-dimethyl-oxane-2,5,5-triol' DVC 4 R-1,2-PROPANEDIOL PGR 5 water HOH #