HEADER IMMUNE SYSTEM/PEPTIDE 02-JAN-01 1HI6 TITLE ANTI-P24 (HIV-1) FAB FRAGMENT CB41 COMPLEXED WITH A PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: IGG2A KAPPA ANTIBODY CB41 (LIGHT CHAIN); COMPND 3 CHAIN: A; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: IGG2A KAPPA ANTIBODY CB41 (HEAVY CHAIN); COMPND 6 CHAIN: B; COMPND 7 MOL_ID: 3; COMPND 8 MOLECULE: PEPTIDE 5; COMPND 9 CHAIN: C; COMPND 10 ENGINEERED: YES; COMPND 11 OTHER_DETAILS: EPITOPE-RELATED PEPTIDE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 STRAIN: BALB/C; SOURCE 6 CELL_LINE: CB 4/1/1/F6 B-CELL HYBRIDOMA; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 9 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 10 ORGANISM_TAXID: 10090; SOURCE 11 STRAIN: BALB/C; SOURCE 12 CELL_LINE: CB 4/1/1/F6 B-CELL HYBRIDOMA; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 16 ORGANISM_TAXID: 32630 KEYWDS IMMUNE SYSTEM/PEPTIDE, COMPLEX (ANTIBODY-PEPTIDE), POLYSPECIFICITY, KEYWDS 2 CROSSREACTIVITY, FAB-FRAGMENT, HIV-1, IMMUNE SYSTEM-PEPTIDE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.HAHN,H.WESSNER,J.SCHNEIDER-MERGENER,W.HOHNE REVDAT 6 13-DEC-23 1HI6 1 REMARK REVDAT 5 24-JUL-19 1HI6 1 REMARK REVDAT 4 08-MAY-19 1HI6 1 REMARK LINK REVDAT 3 28-DEC-16 1HI6 1 SOURCE REMARK VERSN FORMUL REVDAT 2 24-FEB-09 1HI6 1 VERSN REVDAT 1 08-FEB-01 1HI6 0 JRNL AUTH T.KEITEL,A.KRAMER,H.WESSNER,C.SCHOLZ,J.SCHNEIDER-MERGENER, JRNL AUTH 2 W.HOHNE JRNL TITL CRYSTALLOGRAPHIC ANALYSIS OF ANTI-P24 (HIV-1) MONOCLONAL JRNL TITL 2 ANTIBODY CROSS-REACTIVITY AND POLYSPECIFICITY JRNL REF CELL(CAMBRIDGE,MASS.) V. 91 811 1997 JRNL REFN ISSN 0092-8674 JRNL PMID 9413990 JRNL DOI 10.1016/S0092-8674(00)80469-9 REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.1 REMARK 3 NUMBER OF REFLECTIONS : 29486 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.284 REMARK 3 FREE R VALUE : 0.329 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1472 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 29 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.58 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1000 REMARK 3 BIN R VALUE (WORKING SET) : 0.3580 REMARK 3 BIN FREE R VALUE : 0.3710 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3360 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 59 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -7.57000 REMARK 3 B22 (A**2) : -7.57000 REMARK 3 B33 (A**2) : 15.15000 REMARK 3 B12 (A**2) : -3.79000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.522 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1HI6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-JAN-01. REMARK 100 THE DEPOSITION ID IS D_1290005726. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-APR-99 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 2976 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 90.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.08800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : 0.40100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS 1.0 REMARK 200 STARTING MODEL: 1BOG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HANGING DROP SET UP AT ROOM REMARK 280 TEMPERATURE. PROTEIN CONCENTRATION: 10 MG/ML RESERVOIR: 1.8 M REMARK 280 AMMONIUM SULFATE, 0.1 M MOPS-BUFFER, PH 7.5., PH 7.50, VAPOR REMARK 280 DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 98.03000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 196.06000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 147.04500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 245.07500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 49.01500 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 98.03000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 196.06000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 245.07500 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 147.04500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 49.01500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 NH2: THE SYNTHETIC PEPTIDE HAS ITS C-TERMINAL END BLOCKED REMARK 400 WITH AN AMIDE GROUP. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 168 CB - CA - C ANGL. DEV. = 15.0 DEGREES REMARK 500 LEU B 168 CA - CB - CG ANGL. DEV. = 21.6 DEGREES REMARK 500 LEU B 168 CB - CG - CD1 ANGL. DEV. = 11.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 26 3.49 -67.86 REMARK 500 SER A 31 11.38 59.94 REMARK 500 ALA A 51 -33.47 69.46 REMARK 500 ASN A 52 25.58 -151.78 REMARK 500 SER A 67 -31.15 -149.86 REMARK 500 ASP A 151 40.40 39.85 REMARK 500 THR A 200 -0.42 -51.50 REMARK 500 ASP B 2 111.83 173.96 REMARK 500 SER B 85 70.35 45.00 REMARK 500 LYS B 99 -28.67 87.47 REMARK 500 THR B 131 105.79 -53.36 REMARK 500 PRO B 146 -162.80 -100.37 REMARK 500 PRO C 4 4.13 -57.26 REMARK 500 GLU C 5 37.96 -74.12 REMARK 500 LEU C 7 -86.12 -165.95 REMARK 500 ALA C 9 15.30 -56.17 REMARK 500 ARG C 10 12.28 47.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 12 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1BOG RELATED DB: PDB REMARK 900 ANTI-P24 (HIV-1) FAB FRAGMENT CB41 COMPLEXED WITH AN EPITOPE- REMARK 900 HOMOLOGOUS PEPTIDE REMARK 900 RELATED ID: 1CFN RELATED DB: PDB REMARK 900 ANTI-P24 (HIV-1) FAB FRAGMENT CB41 COMPLEXED WITH AN EPITOPE- REMARK 900 RELATED PEPTIDE REMARK 900 RELATED ID: 1CFQ RELATED DB: PDB REMARK 900 ANTI-P24 (HIV-1) FAB FRAGMENT CB41 REMARK 900 RELATED ID: 1CFS RELATED DB: PDB REMARK 900 ANTI-P24 (HIV-1) FAB FRAGMENT CB41 COMPLEXED WITH AN EPITOPE- REMARK 900 UNRELATED PEPTIDE REMARK 900 RELATED ID: 1CFT RELATED DB: PDB REMARK 900 ANTI-P24 (HIV-1) FAB FRAGMENT CB41 COMPLEXED WITH AN EPITOPE- REMARK 900 UNRELATED D-PEPTIDE REMARK 900 RELATED ID: 1HH6 RELATED DB: PDB REMARK 900 ANTI-P24 (HIV-1) FAB FRAGMENT CB41 COMPLEXED WITH A PEPTIDE REMARK 900 RELATED ID: 1HH9 RELATED DB: PDB REMARK 900 ANTI-P24 (HIV-1) FAB FRAGMENT CB41 COMPLEXED WITH A PEPTIDE REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE IS RELATED TO THE ENTRY 1BOG. THE TWO RESIDUES IN REMARK 999 THIS ENTRY VALB168, THRB171 ARE LEU168 AND SER171 RESPECTIVELY REMARK 999 IN THE ENTRY 1BOG DBREF 1HI6 A 1 214 PDB 1HI6 1HI6 1 214 DBREF 1HI6 B 1 213 PDB 1HI6 1HI6 1 213 DBREF 1HI6 C 1 12 PDB 1HI6 1HI6 1 12 SEQRES 1 A 214 ASP ILE LYS MET THR GLN SER PRO SER SER MET TYR THR SEQRES 2 A 214 SER LEU GLY GLU ARG VAL THR ILE THR CYS LYS ALA SER SEQRES 3 A 214 GLN ASP ILE ASN SER PHE LEU THR TRP PHE LEU GLN LYS SEQRES 4 A 214 PRO GLY LYS SER PRO LYS THR LEU ILE TYR ARG ALA ASN SEQRES 5 A 214 ARG LEU MET ILE GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 A 214 GLY SER GLY GLN THR TYR SER LEU THR ILE SER SER LEU SEQRES 7 A 214 GLU TYR GLU ASP MET GLY ILE TYR TYR CYS LEU GLN TYR SEQRES 8 A 214 ASP ASP PHE PRO LEU THR PHE GLY ALA GLY THR LYS LEU SEQRES 9 A 214 ASP LEU LYS ARG ALA ASP ALA ALA PRO THR VAL SER ILE SEQRES 10 A 214 PHE PRO PRO SER SER GLU GLN LEU THR SER GLY GLY ALA SEQRES 11 A 214 SER VAL VAL CYS PHE LEU ASN ASN PHE TYR PRO LYS GLU SEQRES 12 A 214 ILE ASN VAL LYS TRP LYS ILE ASP GLY SER GLU ARG GLN SEQRES 13 A 214 ASN GLY VAL LEU ASP SER TRP THR GLU GLN ASP SER LYS SEQRES 14 A 214 ASP SER THR TYR SER MET SER SER THR LEU THR LEU THR SEQRES 15 A 214 LYS ASP GLU TYR GLU ARG HIS ASN SER TYR THR CYS GLU SEQRES 16 A 214 ALA THR HIS LYS THR SER THR SER PRO ILE VAL LYS SER SEQRES 17 A 214 PHE ASN ARG ASN GLU CYS SEQRES 1 B 213 GLN ASP GLN LEU GLN GLN SER GLY ALA GLU LEU VAL ARG SEQRES 2 B 213 PRO GLY ALA SER VAL LYS LEU SER CYS LYS ALA LEU GLY SEQRES 3 B 213 TYR ILE PHE THR ASP TYR GLU ILE HIS TRP VAL LYS GLN SEQRES 4 B 213 THR PRO VAL HIS GLY LEU GLU TRP ILE GLY GLY ILE HIS SEQRES 5 B 213 PRO GLY SER SER GLY THR ALA TYR ASN GLN LYS PHE LYS SEQRES 6 B 213 GLY LYS ALA THR LEU THR ALA ASP LYS SER SER THR THR SEQRES 7 B 213 ALA PHE MET GLU LEU SER SER LEU THR SER GLU ASP SER SEQRES 8 B 213 ALA VAL TYR TYR CYS THR ARG LYS ASP TYR TRP GLY GLN SEQRES 9 B 213 GLY THR LEU VAL THR VAL SER ALA ALA LYS THR THR ALA SEQRES 10 B 213 PRO SER VAL TYR PRO LEU VAL PRO VAL CYS GLY GLY THR SEQRES 11 B 213 THR GLY SER SER VAL THR LEU GLY CYS LEU VAL LYS GLY SEQRES 12 B 213 TYR PHE PRO GLU PRO VAL THR LEU THR TRP ASN SER GLY SEQRES 13 B 213 SER LEU SER SER GLY VAL HIS THR PHE PRO ALA LEU LEU SEQRES 14 B 213 GLN SER GLY LEU TYR THR LEU SER SER SER VAL THR VAL SEQRES 15 B 213 THR SER ASN THR TRP PRO SER GLN THR ILE THR CYS ASN SEQRES 16 B 213 VAL ALA HIS PRO ALA SER SER THR LYS VAL ASP LYS LYS SEQRES 17 B 213 ILE GLU PRO ARG VAL SEQRES 1 C 12 ASP ALA THR PRO GLU TRP LEU GLY ALA ARG LEU NH2 HET NH2 C 12 1 HETNAM NH2 AMINO GROUP FORMUL 3 NH2 H2 N FORMUL 4 HOH *59(H2 O) HELIX 1 1 GLU A 79 MET A 83 5 5 HELIX 2 2 SER A 121 GLY A 128 1 8 HELIX 3 3 LYS A 183 GLU A 187 1 5 HELIX 4 4 ILE B 28 TYR B 32 5 5 HELIX 5 5 GLN B 62 PHE B 64 5 3 HELIX 6 6 LYS B 74 SER B 76 5 3 HELIX 7 7 THR B 87 SER B 91 5 5 HELIX 8 8 ASN B 185 TRP B 187 5 3 HELIX 9 9 PRO B 199 SER B 202 5 4 SHEET 1 AA 4 MET A 4 SER A 7 0 SHEET 2 AA 4 VAL A 19 ALA A 25 -1 O THR A 22 N SER A 7 SHEET 3 AA 4 THR A 70 ILE A 75 -1 O TYR A 71 N CYS A 23 SHEET 4 AA 4 PHE A 62 GLY A 66 -1 O SER A 63 N THR A 74 SHEET 1 AB 6 SER A 10 THR A 13 0 SHEET 2 AB 6 THR A 102 LEU A 106 1 O LYS A 103 N MET A 11 SHEET 3 AB 6 GLY A 84 GLN A 90 -1 O GLY A 84 N LEU A 104 SHEET 4 AB 6 LEU A 33 GLN A 38 -1 O THR A 34 N LEU A 89 SHEET 5 AB 6 LYS A 45 TYR A 49 -1 O LYS A 45 N LEU A 37 SHEET 6 AB 6 ARG A 53 LEU A 54 -1 O ARG A 53 N TYR A 49 SHEET 1 AC 4 SER A 10 THR A 13 0 SHEET 2 AC 4 THR A 102 LEU A 106 1 O LYS A 103 N MET A 11 SHEET 3 AC 4 GLY A 84 GLN A 90 -1 O GLY A 84 N LEU A 104 SHEET 4 AC 4 THR A 97 PHE A 98 -1 O THR A 97 N GLN A 90 SHEET 1 AD 4 THR A 114 PHE A 118 0 SHEET 2 AD 4 GLY A 129 PHE A 139 -1 O VAL A 133 N PHE A 118 SHEET 3 AD 4 TYR A 173 THR A 182 -1 O TYR A 173 N PHE A 139 SHEET 4 AD 4 VAL A 159 TRP A 163 -1 O LEU A 160 N THR A 178 SHEET 1 AE 4 SER A 153 ARG A 155 0 SHEET 2 AE 4 ILE A 144 ILE A 150 -1 O TRP A 148 N ARG A 155 SHEET 3 AE 4 SER A 191 HIS A 198 -1 O THR A 193 N LYS A 149 SHEET 4 AE 4 ILE A 205 ASN A 210 -1 O ILE A 205 N ALA A 196 SHEET 1 BA 4 GLN B 3 GLN B 6 0 SHEET 2 BA 4 VAL B 18 LEU B 25 -1 O LYS B 23 N GLN B 5 SHEET 3 BA 4 THR B 78 LEU B 83 -1 O ALA B 79 N CYS B 22 SHEET 4 BA 4 ALA B 68 ASP B 73 -1 O THR B 69 N GLU B 82 SHEET 1 BB 6 GLU B 10 VAL B 12 0 SHEET 2 BB 6 THR B 106 VAL B 110 1 O LEU B 107 N GLU B 10 SHEET 3 BB 6 ALA B 92 THR B 97 -1 O ALA B 92 N VAL B 108 SHEET 4 BB 6 ILE B 34 THR B 40 -1 O HIS B 35 N THR B 97 SHEET 5 BB 6 GLY B 44 HIS B 52 -1 O GLY B 44 N THR B 40 SHEET 6 BB 6 GLY B 57 TYR B 60 -1 O GLY B 57 N HIS B 52 SHEET 1 BC 4 SER B 119 LEU B 123 0 SHEET 2 BC 4 SER B 134 TYR B 144 -1 O GLY B 138 N LEU B 123 SHEET 3 BC 4 LEU B 173 THR B 183 -1 O TYR B 174 N TYR B 144 SHEET 4 BC 4 VAL B 162 THR B 164 -1 O HIS B 163 N SER B 179 SHEET 1 BD 4 SER B 119 LEU B 123 0 SHEET 2 BD 4 SER B 134 TYR B 144 -1 O GLY B 138 N LEU B 123 SHEET 3 BD 4 LEU B 173 THR B 183 -1 O TYR B 174 N TYR B 144 SHEET 4 BD 4 LEU B 168 GLN B 170 -1 O LEU B 168 N THR B 175 SHEET 1 BE 3 THR B 150 TRP B 153 0 SHEET 2 BE 3 THR B 193 HIS B 198 -1 O ASN B 195 N THR B 152 SHEET 3 BE 3 THR B 203 LYS B 208 -1 O THR B 203 N HIS B 198 SSBOND 1 CYS A 23 CYS A 88 1555 1555 2.03 SSBOND 2 CYS A 134 CYS A 194 1555 1555 2.03 SSBOND 3 CYS A 214 CYS B 127 1555 1555 2.03 SSBOND 4 CYS B 22 CYS B 96 1555 1555 2.04 SSBOND 5 CYS B 139 CYS B 194 1555 1555 2.04 LINK C LEU C 11 N NH2 C 12 1555 1555 1.33 CISPEP 1 SER A 7 PRO A 8 0 -0.46 CISPEP 2 PHE A 94 PRO A 95 0 -0.08 CISPEP 3 TYR A 140 PRO A 141 0 -0.26 CISPEP 4 PHE B 145 PRO B 146 0 0.00 CISPEP 5 GLU B 147 PRO B 148 0 0.08 CISPEP 6 TRP B 187 PRO B 188 0 0.02 CRYST1 102.960 102.960 294.090 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009712 0.005607 0.000000 0.00000 SCALE2 0.000000 0.011215 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003400 0.00000