HEADER MATRIX PROTEIN 28-FEB-96 1HIW TITLE TRIMERIC HIV-1 MATRIX PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: HIV-1 MATRIX PROTEIN; COMPND 3 CHAIN: A, B, C, Q, R, S; COMPND 4 FRAGMENT: CORE PROTEIN P17, RESIDUES 1 - 131 OF GAG POLYPROTEIN WITH COMPND 5 N-TERMINAL HIS AND MET; COMPND 6 SYNONYM: HIV-1 MA, P17, MATRIX PROTEIN; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: THE PROTEIN HAS AN N-TERMINAL HISTIDINE AND THE COMPND 9 INITIATOR METHIONINE. THE PROTEIN IS NOT MYRISTOYLATED. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 3 ORGANISM_TAXID: 11676; SOURCE 4 STRAIN: NL4-3; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: WISP93-93; SOURCE 8 OTHER_DETAILS: T7 PROMOTER KEYWDS HIV-1, P17, HIV-1 MA, MATRIX PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.P.HILL,D.WORTHYLAKE,D.P.BANCROFT,A.M.CHRISTENSEN,W.I.SUNDQUIST REVDAT 4 07-FEB-24 1HIW 1 REMARK REVDAT 3 24-FEB-09 1HIW 1 VERSN REVDAT 2 01-APR-03 1HIW 1 JRNL REVDAT 1 14-OCT-96 1HIW 0 JRNL AUTH C.P.HILL,D.WORTHYLAKE,D.P.BANCROFT,A.M.CHRISTENSEN, JRNL AUTH 2 W.I.SUNDQUIST JRNL TITL CRYSTAL STRUCTURES OF THE TRIMERIC HUMAN IMMUNODEFICIENCY JRNL TITL 2 VIRUS TYPE 1 MATRIX PROTEIN: IMPLICATIONS FOR MEMBRANE JRNL TITL 3 ASSOCIATION AND ASSEMBLY. JRNL REF PROC.NATL.ACAD.SCI.USA V. 93 3099 1996 JRNL REFN ISSN 0027-8424 JRNL PMID 8610175 JRNL DOI 10.1073/PNAS.93.7.3099 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 35264 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.259 REMARK 3 FREE R VALUE : 0.332 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1770 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.40 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 82.30 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3508 REMARK 3 BIN R VALUE (WORKING SET) : 0.3550 REMARK 3 BIN FREE R VALUE : 0.3930 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 199 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5238 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 40 REMARK 3 SOLVENT ATOMS : 70 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.012 REMARK 3 BOND ANGLES (DEGREES) : 1.670 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PARHCSDX.PRO REMARK 3 PARAMETER FILE 2 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPHSCDX.PRO REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1HIW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000173878. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : SEP-94 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36171 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.19500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: X-PLOR 3.1 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 45.58150 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: Q, R, S REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 ALA A 3 REMARK 465 ARG A 4 REMARK 465 ALA A 5 REMARK 465 SER A 6 REMARK 465 THR A 122 REMARK 465 GLY A 123 REMARK 465 ASN A 124 REMARK 465 ASN A 125 REMARK 465 SER A 126 REMARK 465 GLN A 127 REMARK 465 VAL A 128 REMARK 465 SER A 129 REMARK 465 GLN A 130 REMARK 465 ASN A 131 REMARK 465 TYR A 132 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 ALA B 3 REMARK 465 ARG B 4 REMARK 465 ALA B 5 REMARK 465 SER B 6 REMARK 465 GLN B 117 REMARK 465 ALA B 118 REMARK 465 ALA B 119 REMARK 465 ALA B 120 REMARK 465 ASP B 121 REMARK 465 THR B 122 REMARK 465 GLY B 123 REMARK 465 ASN B 124 REMARK 465 ASN B 125 REMARK 465 SER B 126 REMARK 465 GLN B 127 REMARK 465 VAL B 128 REMARK 465 SER B 129 REMARK 465 GLN B 130 REMARK 465 ASN B 131 REMARK 465 TYR B 132 REMARK 465 HIS C 0 REMARK 465 MET C 1 REMARK 465 GLY C 2 REMARK 465 ALA C 3 REMARK 465 ARG C 4 REMARK 465 ALA C 5 REMARK 465 SER C 6 REMARK 465 ALA C 120 REMARK 465 ASP C 121 REMARK 465 THR C 122 REMARK 465 GLY C 123 REMARK 465 ASN C 124 REMARK 465 ASN C 125 REMARK 465 SER C 126 REMARK 465 GLN C 127 REMARK 465 VAL C 128 REMARK 465 SER C 129 REMARK 465 GLN C 130 REMARK 465 ASN C 131 REMARK 465 TYR C 132 REMARK 465 HIS Q 0 REMARK 465 MET Q 1 REMARK 465 GLY Q 2 REMARK 465 ALA Q 3 REMARK 465 ARG Q 4 REMARK 465 ALA Q 5 REMARK 465 SER Q 6 REMARK 465 LYS Q 112 REMARK 465 LYS Q 113 REMARK 465 LYS Q 114 REMARK 465 ALA Q 115 REMARK 465 GLN Q 116 REMARK 465 GLN Q 117 REMARK 465 ALA Q 118 REMARK 465 ALA Q 119 REMARK 465 ALA Q 120 REMARK 465 ASP Q 121 REMARK 465 THR Q 122 REMARK 465 GLY Q 123 REMARK 465 ASN Q 124 REMARK 465 ASN Q 125 REMARK 465 SER Q 126 REMARK 465 GLN Q 127 REMARK 465 VAL Q 128 REMARK 465 SER Q 129 REMARK 465 GLN Q 130 REMARK 465 ASN Q 131 REMARK 465 TYR Q 132 REMARK 465 HIS R 0 REMARK 465 MET R 1 REMARK 465 GLY R 2 REMARK 465 ALA R 3 REMARK 465 ARG R 4 REMARK 465 ALA R 5 REMARK 465 SER R 6 REMARK 465 ALA R 119 REMARK 465 ALA R 120 REMARK 465 ASP R 121 REMARK 465 THR R 122 REMARK 465 GLY R 123 REMARK 465 ASN R 124 REMARK 465 ASN R 125 REMARK 465 SER R 126 REMARK 465 GLN R 127 REMARK 465 VAL R 128 REMARK 465 SER R 129 REMARK 465 GLN R 130 REMARK 465 ASN R 131 REMARK 465 TYR R 132 REMARK 465 HIS S 0 REMARK 465 MET S 1 REMARK 465 GLY S 2 REMARK 465 ALA S 3 REMARK 465 ARG S 4 REMARK 465 ALA S 5 REMARK 465 SER S 6 REMARK 465 LYS S 110 REMARK 465 SER S 111 REMARK 465 LYS S 112 REMARK 465 LYS S 113 REMARK 465 LYS S 114 REMARK 465 ALA S 115 REMARK 465 GLN S 116 REMARK 465 GLN S 117 REMARK 465 ALA S 118 REMARK 465 ALA S 119 REMARK 465 ALA S 120 REMARK 465 ASP S 121 REMARK 465 THR S 122 REMARK 465 GLY S 123 REMARK 465 ASN S 124 REMARK 465 ASN S 125 REMARK 465 SER S 126 REMARK 465 GLN S 127 REMARK 465 VAL S 128 REMARK 465 SER S 129 REMARK 465 GLN S 130 REMARK 465 ASN S 131 REMARK 465 TYR S 132 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 117 CG CD OE1 NE2 REMARK 470 GLU B 107 CG CD OE1 OE2 REMARK 470 SER B 111 OG REMARK 470 LYS B 112 CG CD CE NZ REMARK 470 LYS B 114 CG CD CE NZ REMARK 470 GLN B 116 CG CD OE1 NE2 REMARK 470 LYS C 114 CG CD CE NZ REMARK 470 GLN C 117 CG CD OE1 NE2 REMARK 470 GLU Q 105 CG CD OE1 OE2 REMARK 470 LYS Q 110 CG CD CE NZ REMARK 470 GLU S 105 CG CD OE1 OE2 REMARK 470 GLU S 106 CG CD OE1 OE2 REMARK 470 GLU S 107 CG CD OE1 OE2 REMARK 470 ASN S 109 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 44 21.54 -74.05 REMARK 500 PRO B 23 -53.32 -13.85 REMARK 500 ALA B 45 24.86 37.20 REMARK 500 ILE B 92 75.78 -109.12 REMARK 500 PRO C 23 -91.56 -43.05 REMARK 500 LYS C 114 -76.41 -47.82 REMARK 500 ALA C 115 30.70 -74.83 REMARK 500 GLN C 116 -33.15 -139.09 REMARK 500 ALA C 118 -64.75 -95.39 REMARK 500 GLN Q 108 4.46 -63.90 REMARK 500 LYS Q 110 37.61 170.29 REMARK 500 GLN R 116 -8.54 -57.75 REMARK 500 GLN R 117 34.36 -88.88 REMARK 500 LYS S 32 -30.61 -31.12 REMARK 500 ASN S 47 109.17 -57.38 REMARK 500 GLU S 107 -62.13 -92.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 11 GLU A 12 149.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG Q 91 0.08 SIDE CHAIN REMARK 500 ARG R 20 0.08 SIDE CHAIN REMARK 500 ARG R 39 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 TYR C 29 10.41 REMARK 500 GLY Q 24 10.64 REMARK 500 VAL R 88 -10.24 REMARK 500 TRP S 16 -10.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 R 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 Q 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 R 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 R 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 S 1006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 1007 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1008 DBREF 1HIW A 2 132 UNP P12493 GAG_HV1N5 1 131 DBREF 1HIW B 2 132 UNP P12493 GAG_HV1N5 1 131 DBREF 1HIW C 2 132 UNP P12493 GAG_HV1N5 1 131 DBREF 1HIW Q 2 132 UNP P12493 GAG_HV1N5 1 131 DBREF 1HIW R 2 132 UNP P12493 GAG_HV1N5 1 131 DBREF 1HIW S 2 132 UNP P12493 GAG_HV1N5 1 131 SEQRES 1 A 133 HIS MET GLY ALA ARG ALA SER VAL LEU SER GLY GLY GLU SEQRES 2 A 133 LEU ASP LYS TRP GLU LYS ILE ARG LEU ARG PRO GLY GLY SEQRES 3 A 133 LYS LYS GLN TYR LYS LEU LYS HIS ILE VAL TRP ALA SER SEQRES 4 A 133 ARG GLU LEU GLU ARG PHE ALA VAL ASN PRO GLY LEU LEU SEQRES 5 A 133 GLU THR SER GLU GLY CYS ARG GLN ILE LEU GLY GLN LEU SEQRES 6 A 133 GLN PRO SER LEU GLN THR GLY SER GLU GLU LEU ARG SER SEQRES 7 A 133 LEU TYR ASN THR ILE ALA VAL LEU TYR CYS VAL HIS GLN SEQRES 8 A 133 ARG ILE ASP VAL LYS ASP THR LYS GLU ALA LEU ASP LYS SEQRES 9 A 133 ILE GLU GLU GLU GLN ASN LYS SER LYS LYS LYS ALA GLN SEQRES 10 A 133 GLN ALA ALA ALA ASP THR GLY ASN ASN SER GLN VAL SER SEQRES 11 A 133 GLN ASN TYR SEQRES 1 B 133 HIS MET GLY ALA ARG ALA SER VAL LEU SER GLY GLY GLU SEQRES 2 B 133 LEU ASP LYS TRP GLU LYS ILE ARG LEU ARG PRO GLY GLY SEQRES 3 B 133 LYS LYS GLN TYR LYS LEU LYS HIS ILE VAL TRP ALA SER SEQRES 4 B 133 ARG GLU LEU GLU ARG PHE ALA VAL ASN PRO GLY LEU LEU SEQRES 5 B 133 GLU THR SER GLU GLY CYS ARG GLN ILE LEU GLY GLN LEU SEQRES 6 B 133 GLN PRO SER LEU GLN THR GLY SER GLU GLU LEU ARG SER SEQRES 7 B 133 LEU TYR ASN THR ILE ALA VAL LEU TYR CYS VAL HIS GLN SEQRES 8 B 133 ARG ILE ASP VAL LYS ASP THR LYS GLU ALA LEU ASP LYS SEQRES 9 B 133 ILE GLU GLU GLU GLN ASN LYS SER LYS LYS LYS ALA GLN SEQRES 10 B 133 GLN ALA ALA ALA ASP THR GLY ASN ASN SER GLN VAL SER SEQRES 11 B 133 GLN ASN TYR SEQRES 1 C 133 HIS MET GLY ALA ARG ALA SER VAL LEU SER GLY GLY GLU SEQRES 2 C 133 LEU ASP LYS TRP GLU LYS ILE ARG LEU ARG PRO GLY GLY SEQRES 3 C 133 LYS LYS GLN TYR LYS LEU LYS HIS ILE VAL TRP ALA SER SEQRES 4 C 133 ARG GLU LEU GLU ARG PHE ALA VAL ASN PRO GLY LEU LEU SEQRES 5 C 133 GLU THR SER GLU GLY CYS ARG GLN ILE LEU GLY GLN LEU SEQRES 6 C 133 GLN PRO SER LEU GLN THR GLY SER GLU GLU LEU ARG SER SEQRES 7 C 133 LEU TYR ASN THR ILE ALA VAL LEU TYR CYS VAL HIS GLN SEQRES 8 C 133 ARG ILE ASP VAL LYS ASP THR LYS GLU ALA LEU ASP LYS SEQRES 9 C 133 ILE GLU GLU GLU GLN ASN LYS SER LYS LYS LYS ALA GLN SEQRES 10 C 133 GLN ALA ALA ALA ASP THR GLY ASN ASN SER GLN VAL SER SEQRES 11 C 133 GLN ASN TYR SEQRES 1 Q 133 HIS MET GLY ALA ARG ALA SER VAL LEU SER GLY GLY GLU SEQRES 2 Q 133 LEU ASP LYS TRP GLU LYS ILE ARG LEU ARG PRO GLY GLY SEQRES 3 Q 133 LYS LYS GLN TYR LYS LEU LYS HIS ILE VAL TRP ALA SER SEQRES 4 Q 133 ARG GLU LEU GLU ARG PHE ALA VAL ASN PRO GLY LEU LEU SEQRES 5 Q 133 GLU THR SER GLU GLY CYS ARG GLN ILE LEU GLY GLN LEU SEQRES 6 Q 133 GLN PRO SER LEU GLN THR GLY SER GLU GLU LEU ARG SER SEQRES 7 Q 133 LEU TYR ASN THR ILE ALA VAL LEU TYR CYS VAL HIS GLN SEQRES 8 Q 133 ARG ILE ASP VAL LYS ASP THR LYS GLU ALA LEU ASP LYS SEQRES 9 Q 133 ILE GLU GLU GLU GLN ASN LYS SER LYS LYS LYS ALA GLN SEQRES 10 Q 133 GLN ALA ALA ALA ASP THR GLY ASN ASN SER GLN VAL SER SEQRES 11 Q 133 GLN ASN TYR SEQRES 1 R 133 HIS MET GLY ALA ARG ALA SER VAL LEU SER GLY GLY GLU SEQRES 2 R 133 LEU ASP LYS TRP GLU LYS ILE ARG LEU ARG PRO GLY GLY SEQRES 3 R 133 LYS LYS GLN TYR LYS LEU LYS HIS ILE VAL TRP ALA SER SEQRES 4 R 133 ARG GLU LEU GLU ARG PHE ALA VAL ASN PRO GLY LEU LEU SEQRES 5 R 133 GLU THR SER GLU GLY CYS ARG GLN ILE LEU GLY GLN LEU SEQRES 6 R 133 GLN PRO SER LEU GLN THR GLY SER GLU GLU LEU ARG SER SEQRES 7 R 133 LEU TYR ASN THR ILE ALA VAL LEU TYR CYS VAL HIS GLN SEQRES 8 R 133 ARG ILE ASP VAL LYS ASP THR LYS GLU ALA LEU ASP LYS SEQRES 9 R 133 ILE GLU GLU GLU GLN ASN LYS SER LYS LYS LYS ALA GLN SEQRES 10 R 133 GLN ALA ALA ALA ASP THR GLY ASN ASN SER GLN VAL SER SEQRES 11 R 133 GLN ASN TYR SEQRES 1 S 133 HIS MET GLY ALA ARG ALA SER VAL LEU SER GLY GLY GLU SEQRES 2 S 133 LEU ASP LYS TRP GLU LYS ILE ARG LEU ARG PRO GLY GLY SEQRES 3 S 133 LYS LYS GLN TYR LYS LEU LYS HIS ILE VAL TRP ALA SER SEQRES 4 S 133 ARG GLU LEU GLU ARG PHE ALA VAL ASN PRO GLY LEU LEU SEQRES 5 S 133 GLU THR SER GLU GLY CYS ARG GLN ILE LEU GLY GLN LEU SEQRES 6 S 133 GLN PRO SER LEU GLN THR GLY SER GLU GLU LEU ARG SER SEQRES 7 S 133 LEU TYR ASN THR ILE ALA VAL LEU TYR CYS VAL HIS GLN SEQRES 8 S 133 ARG ILE ASP VAL LYS ASP THR LYS GLU ALA LEU ASP LYS SEQRES 9 S 133 ILE GLU GLU GLU GLN ASN LYS SER LYS LYS LYS ALA GLN SEQRES 10 S 133 GLN ALA ALA ALA ASP THR GLY ASN ASN SER GLN VAL SER SEQRES 11 S 133 GLN ASN TYR HET SO4 A1002 5 HET SO4 B1008 5 HET SO4 C1007 5 HET SO4 Q1003 5 HET SO4 R1001 5 HET SO4 R1004 5 HET SO4 R1005 5 HET SO4 S1006 5 HETNAM SO4 SULFATE ION FORMUL 7 SO4 8(O4 S 2-) FORMUL 15 HOH *70(H2 O) HELIX 1 1 GLU A 12 LYS A 18 1 7 HELIX 2 2 LEU A 31 ARG A 43 1 13 HELIX 3 3 PRO A 48 GLU A 52 5 5 HELIX 4 4 SER A 54 LEU A 68 1 15 HELIX 5 5 GLU A 73 HIS A 89 1 17 HELIX 6 6 THR A 97 ALA A 119 1 23 HELIX 7 7 GLU B 12 LYS B 18 1 7 HELIX 8 8 LEU B 31 ARG B 43 1 13 HELIX 9 9 PRO B 48 GLU B 52 5 5 HELIX 10 10 SER B 54 SER B 67 1 14 HELIX 11 11 GLU B 73 GLN B 90 1 18 HELIX 12 12 THR B 97 LYS B 113 1 17 HELIX 13 13 GLY C 10 LYS C 18 1 9 HELIX 14 14 LEU C 31 ARG C 43 5 13 HELIX 15 15 PRO C 48 GLU C 52 5 5 HELIX 16 16 SER C 54 SER C 67 1 14 HELIX 17 17 GLU C 73 GLN C 90 1 18 HELIX 18 18 THR C 97 GLN C 117 1 21 HELIX 19 19 GLY Q 10 LYS Q 18 1 9 HELIX 20 20 LEU Q 31 PHE Q 44 1 14 HELIX 21 21 PRO Q 48 GLU Q 52 5 5 HELIX 22 22 SER Q 54 LEU Q 68 1 15 HELIX 23 23 GLU Q 73 HIS Q 89 1 17 HELIX 24 24 THR Q 97 ASN Q 109 1 13 HELIX 25 25 GLU R 12 LYS R 18 1 7 HELIX 26 26 LEU R 31 PHE R 44 1 14 HELIX 27 27 PRO R 48 GLU R 52 5 5 HELIX 28 28 SER R 54 LEU R 64 1 11 HELIX 29 29 PRO R 66 LEU R 68 5 3 HELIX 30 30 GLU R 73 GLN R 90 1 18 HELIX 31 31 THR R 97 GLN R 117 1 21 HELIX 32 32 GLU S 12 LYS S 18 1 7 HELIX 33 33 LEU S 31 ARG S 43 1 13 HELIX 34 34 PRO S 48 LEU S 50 5 3 HELIX 35 35 SER S 54 SER S 67 1 14 HELIX 36 36 GLU S 73 HIS S 89 1 17 HELIX 37 37 THR S 97 GLU S 107 1 11 SITE 1 AC1 6 LYS A 113 ARG R 22 GLY R 25 LYS R 26 SITE 2 AC1 6 LYS R 27 HOH R 959 SITE 1 AC2 6 ARG A 22 GLY A 25 LYS A 26 LYS A 27 SITE 2 AC2 6 HOH A 936 LYS R 113 SITE 1 AC3 5 ARG Q 22 LYS Q 26 LYS Q 27 HOH Q 902 SITE 2 AC3 5 LYS S 18 SITE 1 AC4 2 VAL R 35 ARG R 39 SITE 1 AC5 1 ARG R 43 SITE 1 AC6 5 ARG S 22 GLY S 25 LYS S 26 LYS S 27 SITE 2 AC6 5 HOH S 938 SITE 1 AC7 5 ARG C 22 GLY C 25 LYS C 26 LYS C 27 SITE 2 AC7 5 HOH C 954 SITE 1 AC8 3 GLY B 25 LYS B 26 LYS B 27 CRYST1 64.423 91.163 73.997 90.00 102.91 90.00 P 1 21 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015522 0.000000 0.003558 0.00000 SCALE2 0.000000 0.010969 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013865 0.00000