HEADER TRANSCRIPTION/DNA 11-JAN-01 1HJC TITLE CRYSTAL STRUCTURE OF RUNX-1/AML1/CBFALPHA RUNT DOMAIN BOUND TO A DNA TITLE 2 FRAGMENT FROM THE CSF-1R PROMOTER COMPND MOL_ID: 1; COMPND 2 MOLECULE: RUNT-RELATED TRANSCRIPTION FACTOR 1; COMPND 3 CHAIN: A, D; COMPND 4 FRAGMENT: RESIDUES 60-182; COMPND 5 SYNONYM: CORE-BINDING FACTOR, ALPHA B SUBUNIT, RUNX-1, AML1, COMPND 6 PEBP2ALPHAB, CBFA2; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DNA (5'-(*GP*AP*AP*CP*TP*CP*TP*GP*TP*GP*GP* TP*TP*GP*CP*G)- COMPND 10 3'); COMPND 11 CHAIN: B, E; COMPND 12 FRAGMENT: FRAGMENT FROM CSF-1R PROMOTER; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: DNA (5'-(CP*CP*GP*CP*AP*AP*CP*CP*AP*CP*AP* GP*AP*GP*TP*T)- COMPND 16 3'); COMPND 17 CHAIN: C, F; COMPND 18 FRAGMENT: FRAGMENT FROM CSF-1R PROMOTER; COMPND 19 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PAR2156; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 18 ORGANISM_COMMON: HUMAN; SOURCE 19 ORGANISM_TAXID: 9606 KEYWDS TRANSCRIPTION/DNA, PROTEIN-DNA COMPLEX, TRANSCRIPTION FACTOR, BZIP, KEYWDS 2 RUNX, RUNT, C/EBP, CBF, CORE BINDING FACTOR, AML1, AML, ONCOPROTEIN, KEYWDS 3 TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR T.H.TAHIROV,K.OGATA REVDAT 5 13-DEC-23 1HJC 1 REMARK REVDAT 4 08-MAY-19 1HJC 1 REMARK REVDAT 3 24-FEB-09 1HJC 1 VERSN REVDAT 2 21-JUN-01 1HJC 1 REMARK REVDAT 1 09-MAR-01 1HJC 0 JRNL AUTH T.H.TAHIROV,T.INOUE-BUNGO,H.MORII,A.FUJIKAWA,M.SASAKI, JRNL AUTH 2 K.KIMURA,M.SHIINA,K.SATO,T.KUMASAKA,M.YAMAMOTO,S.ISHII, JRNL AUTH 3 K.OGATA JRNL TITL STRUCTURAL ANALYSES OF DNA RECOGNITION BY THE AML1/RUNX-1 JRNL TITL 2 RUNT DOMAIN AND ITS ALLOSTERIC CONTROL BY CBFBETA JRNL REF CELL(CAMBRIDGE,MASS.) V. 104 755 2001 JRNL REFN ISSN 0092-8674 JRNL PMID 11257229 JRNL DOI 10.1016/S0092-8674(01)00271-9 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH T.H.TAHIROV,T.INOUE-BUNGO,M.SASAKI,M.SHIINA,K.KIMURA,K.SATO, REMARK 1 AUTH 2 T.KUMASAKA,M.YAMAMOTO,N.KAMIYA,K.OGATA REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY X-RAY ANALYSES OF REMARK 1 TITL 2 QUATERNARY, TERNARY AND BINARY PROTEIN-DNA COMPLEXES WITH REMARK 1 TITL 3 INVOLVEMENT OF AML1/RUNX-1/CBFALPHA RUNT DOMAIN, CBFBETA AND REMARK 1 TITL 4 THE C/EBPBETA BZIP REGION REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 57 850 2001 REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 11375505 REMARK 1 DOI 10.1107/S0907444901003900 REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 0.9 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 18.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1305275.520 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 94.5 REMARK 3 NUMBER OF REFLECTIONS : 17550 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 876 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.009 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.82 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2561 REMARK 3 BIN R VALUE (WORKING SET) : 0.4160 REMARK 3 BIN FREE R VALUE : 0.4090 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.70 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 127 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.036 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1826 REMARK 3 NUCLEIC ACID ATOMS : 1300 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 58 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -25.93000 REMARK 3 B22 (A**2) : -21.77000 REMARK 3 B33 (A**2) : 47.69000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.38 REMARK 3 ESD FROM SIGMAA (A) : 0.58 REMARK 3 LOW RESOLUTION CUTOFF (A) : 20.0 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.46 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.70 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.60 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.130 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 4.430 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 6.550 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 5.890 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 8.140 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.30 REMARK 3 BSOL : 30.00 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED, ATOMS C, O, N, REMARK 3 CA AND CB ARE HARMONICALLY RESTRAINED DURING REFINEMENT WITH REMARK 3 HARMONIC RESTRAINT CONSTANT OF 50 REMARK 4 REMARK 4 1HJC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-JAN-01. REMARK 100 THE DEPOSITION ID IS D_1290005788. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUN-00 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL45XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : DIAMOND REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17550 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.650 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 200 DATA REDUNDANCY : 3.436 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04700 REMARK 200 FOR THE DATA SET : 26.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.91 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.09200 REMARK 200 FOR SHELL : 10.90 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS 0.9 REMARK 200 STARTING MODEL: 1IO4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM ACETATE, 0.15 M REMARK 280 MAGNESIUM ACETATE, 5% W/V PEG 4000, 50 MM HEPES BUFFER, PH 7.0 REMARK 280 AT 24 DEGREES C, PH 7.00, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.54700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.09250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 52.03650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.09250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.54700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 52.03650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: CHAIN AND DNA DUPLEX REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 178 REMARK 465 HIS A 179 REMARK 465 ARG A 180 REMARK 465 GLN A 181 REMARK 465 LYS A 182 REMARK 465 ARG D 178 REMARK 465 HIS D 179 REMARK 465 ARG D 180 REMARK 465 GLN D 181 REMARK 465 LYS D 182 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 65 -168.84 -107.31 REMARK 500 GLU A 111 -81.25 -80.91 REMARK 500 SER A 114 85.05 -159.13 REMARK 500 ALA A 120 32.68 -96.18 REMARK 500 GLN A 127 -2.37 74.71 REMARK 500 TYR A 162 79.47 -116.14 REMARK 500 ARG A 164 75.16 28.21 REMARK 500 THR D 65 -149.27 -103.21 REMARK 500 SER D 73 152.79 -44.33 REMARK 500 PRO D 76 171.24 -57.78 REMARK 500 ASP D 99 150.07 -49.62 REMARK 500 ASN D 109 146.52 170.91 REMARK 500 LEU D 117 -169.89 -120.03 REMARK 500 ALA D 120 32.00 -97.11 REMARK 500 ARG D 164 51.23 36.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DG B 11 0.05 SIDE CHAIN REMARK 500 DA C 6 0.06 SIDE CHAIN REMARK 500 DC C 7 0.06 SIDE CHAIN REMARK 500 DA F 6 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1CMO RELATED DB: PDB REMARK 900 IMMUNOGLOBULIN MOTIF DEOXYRIBONUCLEIC ACID- RECOGNITION AND REMARK 900 HETERODIMERIZATION FOR THE PEBP2/CBF RUNT-DOMAIN REMARK 900 RELATED ID: 1CO1 RELATED DB: PDB REMARK 900 FOLD OF THE CBFA REMARK 900 RELATED ID: 1E50 RELATED DB: PDB REMARK 900 AML1/CBFBETA COMPLEX REMARK 900 RELATED ID: 1HJB RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RUNX-1/AML1/CBFALPHA RUNT DOMAIN AND C/EBPBETA REMARK 900 BZIP DIMERIC BOUND TO A DNA FRAGMENT FROM THE CSF-1R PROMOTER REMARK 900 RELATED ID: 1IO4 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RUNX-1/AML1/CBFALPHA RUNT DOMAIN-CBFBETA CORE REMARK 900 DOMAIN DIMERIC AND C/EBPBETA BZIP DIMERIC BOUND TO A DNA FRAGMENT REMARK 900 FROM THE CSF-1R PROMOTER DBREF 1HJC A 60 182 UNP Q03347 AML1_MOUSE 60 182 DBREF 1HJC B 11 26 PDB 1HJC 1HJC 11 26 DBREF 1HJC C 1 16 PDB 1HJC 1HJC 1 16 DBREF 1HJC D 60 182 UNP Q03347 AML1_MOUSE 60 182 DBREF 1HJC E 11 26 PDB 1HJC 1HJC 11 26 DBREF 1HJC F 1 16 PDB 1HJC 1HJC 1 16 SEQRES 1 A 123 GLY GLU LEU VAL ARG THR ASP SER PRO ASN PHE LEU CYS SEQRES 2 A 123 SER VAL LEU PRO THR HIS TRP ARG CYS ASN LYS THR LEU SEQRES 3 A 123 PRO ILE ALA PHE LYS VAL VAL ALA LEU GLY ASP VAL PRO SEQRES 4 A 123 ASP GLY THR LEU VAL THR VAL MET ALA GLY ASN ASP GLU SEQRES 5 A 123 ASN TYR SER ALA GLU LEU ARG ASN ALA THR ALA ALA MET SEQRES 6 A 123 LYS ASN GLN VAL ALA ARG PHE ASN ASP LEU ARG PHE VAL SEQRES 7 A 123 GLY ARG SER GLY ARG GLY LYS SER PHE THR LEU THR ILE SEQRES 8 A 123 THR VAL PHE THR ASN PRO PRO GLN VAL ALA THR TYR HIS SEQRES 9 A 123 ARG ALA ILE LYS ILE THR VAL ASP GLY PRO ARG GLU PRO SEQRES 10 A 123 ARG ARG HIS ARG GLN LYS SEQRES 1 B 16 DG DA DA DC DT DC DT DG DT DG DG DT DT SEQRES 2 B 16 DG DC DG SEQRES 1 C 16 DC DC DG DC DA DA DC DC DA DC DA DG DA SEQRES 2 C 16 DG DT DT SEQRES 1 D 123 GLY GLU LEU VAL ARG THR ASP SER PRO ASN PHE LEU CYS SEQRES 2 D 123 SER VAL LEU PRO THR HIS TRP ARG CYS ASN LYS THR LEU SEQRES 3 D 123 PRO ILE ALA PHE LYS VAL VAL ALA LEU GLY ASP VAL PRO SEQRES 4 D 123 ASP GLY THR LEU VAL THR VAL MET ALA GLY ASN ASP GLU SEQRES 5 D 123 ASN TYR SER ALA GLU LEU ARG ASN ALA THR ALA ALA MET SEQRES 6 D 123 LYS ASN GLN VAL ALA ARG PHE ASN ASP LEU ARG PHE VAL SEQRES 7 D 123 GLY ARG SER GLY ARG GLY LYS SER PHE THR LEU THR ILE SEQRES 8 D 123 THR VAL PHE THR ASN PRO PRO GLN VAL ALA THR TYR HIS SEQRES 9 D 123 ARG ALA ILE LYS ILE THR VAL ASP GLY PRO ARG GLU PRO SEQRES 10 D 123 ARG ARG HIS ARG GLN LYS SEQRES 1 E 16 DG DA DA DC DT DC DT DG DT DG DG DT DT SEQRES 2 E 16 DG DC DG SEQRES 1 F 16 DC DC DG DC DA DA DC DC DA DC DA DG DA SEQRES 2 F 16 DG DT DT FORMUL 7 HOH *58(H2 O) SHEET 1 AA 4 LEU A 62 ARG A 64 0 SHEET 2 AA 4 PHE A 70 SER A 73 -1 O CYS A 72 N VAL A 63 SHEET 3 AA 4 LYS A 90 ALA A 93 -1 O LYS A 90 N SER A 73 SHEET 4 AA 4 VAL A 128 ARG A 130 -1 O ALA A 129 N VAL A 91 SHEET 1 AB 5 HIS A 78 ARG A 80 0 SHEET 2 AB 5 GLN A 158 THR A 169 1 O LYS A 167 N TRP A 79 SHEET 3 AB 5 PHE A 146 VAL A 152 -1 O PHE A 146 N ALA A 165 SHEET 4 AB 5 LEU A 102 GLY A 108 -1 O THR A 104 N THR A 151 SHEET 5 AB 5 THR A 121 ALA A 123 -1 O ALA A 122 N VAL A 103 SHEET 1 AC 2 LEU A 117 ARG A 118 0 SHEET 2 AC 2 ARG A 135 PHE A 136 -1 O ARG A 135 N ARG A 118 SHEET 1 DA 4 LEU D 62 ARG D 64 0 SHEET 2 DA 4 PHE D 70 SER D 73 -1 O CYS D 72 N VAL D 63 SHEET 3 DA 4 LYS D 90 ALA D 93 -1 O LYS D 90 N SER D 73 SHEET 4 DA 4 VAL D 128 ARG D 130 -1 O ALA D 129 N VAL D 91 SHEET 1 DB 5 HIS D 78 ARG D 80 0 SHEET 2 DB 5 GLN D 158 THR D 169 1 O LYS D 167 N TRP D 79 SHEET 3 DB 5 PHE D 146 VAL D 152 -1 O PHE D 146 N ALA D 165 SHEET 4 DB 5 LEU D 102 GLY D 108 -1 O THR D 104 N THR D 151 SHEET 5 DB 5 THR D 121 ALA D 123 -1 O ALA D 122 N VAL D 103 SHEET 1 DC 2 LEU D 117 ARG D 118 0 SHEET 2 DC 2 ARG D 135 PHE D 136 -1 O ARG D 135 N ARG D 118 CISPEP 1 ASN A 155 PRO A 156 0 0.04 CISPEP 2 ASN D 155 PRO D 156 0 -0.01 CRYST1 51.094 104.073 116.185 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019572 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009609 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008607 0.00000