HEADER PRION PROTEIN 27-FEB-03 1HJN TITLE HUMAN PRION PROTEIN AT PH 7.0 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAJOR PRION PROTEIN PRECURSOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: GLOBULAR DOMAIN, RESIDUES 125-228; COMPND 5 SYNONYM: PRP, PRP27-30, PRP33-35C, ASCR, CD230 ANTIGEN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PRION PROTEIN, PRION, BRAIN, GLYCOPROTEIN, GPI-ANCHOR EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR L.CALZOLAI,R.ZAHN REVDAT 4 13-NOV-24 1HJN 1 REMARK REVDAT 3 24-FEB-09 1HJN 1 VERSN REVDAT 2 11-SEP-03 1HJN 1 JRNL REVDAT 1 03-JUL-03 1HJN 0 JRNL AUTH L.CALZOLAI,R.ZAHN JRNL TITL INFLUENCE OF PH ON NMR STRUCTURE AND STABILITY OF THE HUMAN JRNL TITL 2 PRION PROTEIN GLOBULAR DOMAIN JRNL REF J.BIOL.CHEM. V. 278 35592 2003 JRNL REFN ISSN 0021-9258 JRNL PMID 12826672 JRNL DOI 10.1074/JBC.M303005200 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : OPALP REMARK 3 AUTHORS : R.KORADI,M.BILLETER,P.GUNTERT REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1HJN COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-FEB-03. REMARK 100 THE DEPOSITION ID IS D_1290012263. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : DYANA REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWER TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 5 ARG A 148 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 10 ARG A 164 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 11 TYR A 163 CB - CG - CD2 ANGL. DEV. = -4.1 DEGREES REMARK 500 12 CYS A 179 CA - CB - SG ANGL. DEV. = 7.5 DEGREES REMARK 500 16 ARG A 136 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 19 ARG A 164 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 20 CYS A 179 CA - CB - SG ANGL. DEV. = 6.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 MET A 134 -167.85 -163.44 REMARK 500 1 MET A 166 102.47 -48.48 REMARK 500 1 GLU A 168 -12.64 -162.74 REMARK 500 1 SER A 170 11.24 -162.52 REMARK 500 1 PHE A 198 -177.11 -65.01 REMARK 500 2 SER A 132 -169.19 -59.39 REMARK 500 2 PRO A 165 -168.99 -72.35 REMARK 500 2 MET A 166 44.19 -68.25 REMARK 500 2 GLU A 168 -16.93 -174.06 REMARK 500 2 GLN A 172 -65.26 -92.28 REMARK 500 2 ASN A 181 0.51 -65.45 REMARK 500 2 ILE A 182 -70.27 -105.95 REMARK 500 2 PHE A 198 -168.98 -68.04 REMARK 500 3 SER A 132 -177.14 -69.30 REMARK 500 3 MET A 134 50.68 -160.01 REMARK 500 3 SER A 135 -150.60 53.23 REMARK 500 3 PRO A 165 -170.23 -67.87 REMARK 500 3 GLU A 168 -99.07 -139.97 REMARK 500 3 SER A 170 29.58 44.91 REMARK 500 3 GLN A 172 -101.25 -80.67 REMARK 500 4 SER A 132 -163.07 -70.97 REMARK 500 4 MET A 134 37.90 -155.90 REMARK 500 4 SER A 135 -160.69 49.09 REMARK 500 4 TYR A 145 -72.39 -57.96 REMARK 500 4 HIS A 155 0.55 -65.61 REMARK 500 4 GLU A 168 -33.72 -159.70 REMARK 500 4 ASN A 171 178.68 174.02 REMARK 500 4 GLN A 172 -79.70 -70.61 REMARK 500 5 TYR A 128 -176.57 42.80 REMARK 500 5 SER A 132 171.83 -54.53 REMARK 500 5 MET A 134 94.14 -169.13 REMARK 500 5 SER A 135 -140.08 35.46 REMARK 500 5 TYR A 145 2.82 -66.33 REMARK 500 5 PRO A 165 -178.20 -65.65 REMARK 500 5 MET A 166 -147.81 -77.45 REMARK 500 5 GLU A 168 -127.61 -144.99 REMARK 500 5 ASN A 171 -144.37 -163.12 REMARK 500 5 GLU A 221 -39.92 -134.58 REMARK 500 6 MET A 166 90.60 -62.58 REMARK 500 6 GLU A 168 -59.85 -153.36 REMARK 500 6 SER A 170 24.13 47.37 REMARK 500 6 ASN A 173 -70.28 -88.12 REMARK 500 7 SER A 132 -173.27 -63.09 REMARK 500 7 GLU A 168 -37.98 -144.59 REMARK 500 7 PHE A 198 -169.48 -69.03 REMARK 500 8 MET A 134 59.20 -168.48 REMARK 500 8 SER A 135 -146.66 48.98 REMARK 500 8 MET A 166 90.31 -67.42 REMARK 500 8 GLU A 168 -70.00 -179.24 REMARK 500 8 SER A 170 96.11 -171.85 REMARK 500 REMARK 500 THIS ENTRY HAS 126 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 TYR A 169 0.12 SIDE CHAIN REMARK 500 1 PHE A 198 0.08 SIDE CHAIN REMARK 500 1 ARG A 228 0.10 SIDE CHAIN REMARK 500 2 ARG A 136 0.09 SIDE CHAIN REMARK 500 2 TYR A 150 0.10 SIDE CHAIN REMARK 500 3 ARG A 136 0.10 SIDE CHAIN REMARK 500 4 ARG A 148 0.14 SIDE CHAIN REMARK 500 4 TYR A 150 0.09 SIDE CHAIN REMARK 500 5 TYR A 128 0.09 SIDE CHAIN REMARK 500 5 TYR A 150 0.08 SIDE CHAIN REMARK 500 5 ARG A 208 0.10 SIDE CHAIN REMARK 500 5 ARG A 220 0.12 SIDE CHAIN REMARK 500 5 ARG A 228 0.11 SIDE CHAIN REMARK 500 6 ARG A 136 0.08 SIDE CHAIN REMARK 500 6 ARG A 151 0.08 SIDE CHAIN REMARK 500 7 ARG A 148 0.16 SIDE CHAIN REMARK 500 7 TYR A 150 0.07 SIDE CHAIN REMARK 500 7 ARG A 151 0.13 SIDE CHAIN REMARK 500 7 ARG A 208 0.10 SIDE CHAIN REMARK 500 8 ARG A 148 0.12 SIDE CHAIN REMARK 500 8 TYR A 150 0.12 SIDE CHAIN REMARK 500 8 ARG A 228 0.12 SIDE CHAIN REMARK 500 9 TYR A 149 0.07 SIDE CHAIN REMARK 500 9 TYR A 150 0.08 SIDE CHAIN REMARK 500 9 ARG A 151 0.08 SIDE CHAIN REMARK 500 11 TYR A 150 0.12 SIDE CHAIN REMARK 500 11 ARG A 151 0.11 SIDE CHAIN REMARK 500 12 ARG A 148 0.10 SIDE CHAIN REMARK 500 12 TYR A 162 0.07 SIDE CHAIN REMARK 500 12 TYR A 169 0.10 SIDE CHAIN REMARK 500 12 TYR A 218 0.09 SIDE CHAIN REMARK 500 12 ARG A 228 0.08 SIDE CHAIN REMARK 500 14 ARG A 148 0.17 SIDE CHAIN REMARK 500 14 TYR A 150 0.09 SIDE CHAIN REMARK 500 14 TYR A 169 0.08 SIDE CHAIN REMARK 500 14 TYR A 225 0.07 SIDE CHAIN REMARK 500 14 TYR A 226 0.09 SIDE CHAIN REMARK 500 15 ARG A 136 0.08 SIDE CHAIN REMARK 500 15 ARG A 148 0.11 SIDE CHAIN REMARK 500 15 TYR A 150 0.11 SIDE CHAIN REMARK 500 15 TYR A 169 0.07 SIDE CHAIN REMARK 500 16 TYR A 162 0.13 SIDE CHAIN REMARK 500 17 ARG A 148 0.11 SIDE CHAIN REMARK 500 17 TYR A 162 0.07 SIDE CHAIN REMARK 500 18 ARG A 148 0.09 SIDE CHAIN REMARK 500 18 TYR A 150 0.12 SIDE CHAIN REMARK 500 18 TYR A 162 0.07 SIDE CHAIN REMARK 500 19 TYR A 150 0.13 SIDE CHAIN REMARK 500 19 ARG A 151 0.10 SIDE CHAIN REMARK 500 20 ARG A 148 0.10 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 53 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1E1G RELATED DB: PDB REMARK 900 HUMAN PRION PROTEIN VARIANT M166V REMARK 900 RELATED ID: 1E1J RELATED DB: PDB REMARK 900 HUMAN PRION PROTEIN VARIANT M166V REMARK 900 RELATED ID: 1E1P RELATED DB: PDB REMARK 900 HUMAN PRION PROTEIN VARIANT S170N REMARK 900 RELATED ID: 1E1S RELATED DB: PDB REMARK 900 HUMAN PRION PROTEIN VARIANT S170N REMARK 900 RELATED ID: 1E1U RELATED DB: PDB REMARK 900 HUMAN PRION PROTEIN VARIANT R220K REMARK 900 RELATED ID: 1E1W RELATED DB: PDB REMARK 900 HUMAN PRION PROTEIN VARIANT R220K REMARK 900 RELATED ID: 1HJM RELATED DB: PDB REMARK 900 HUMAN PRION PROTEIN AT PH 7.0 DBREF 1HJN A 125 228 UNP P04156 PRIO_HUMAN 125 228 SEQRES 1 A 104 LEU GLY GLY TYR MET LEU GLY SER ALA MET SER ARG PRO SEQRES 2 A 104 ILE ILE HIS PHE GLY SER ASP TYR GLU ASP ARG TYR TYR SEQRES 3 A 104 ARG GLU ASN MET HIS ARG TYR PRO ASN GLN VAL TYR TYR SEQRES 4 A 104 ARG PRO MET ASP GLU TYR SER ASN GLN ASN ASN PHE VAL SEQRES 5 A 104 HIS ASP CYS VAL ASN ILE THR ILE LYS GLN HIS THR VAL SEQRES 6 A 104 THR THR THR THR LYS GLY GLU ASN PHE THR GLU THR ASP SEQRES 7 A 104 VAL LYS MET MET GLU ARG VAL VAL GLU GLN MET CYS ILE SEQRES 8 A 104 THR GLN TYR GLU ARG GLU SER GLN ALA TYR TYR GLN ARG HELIX 1 1 SER A 143 MET A 154 1 12 HELIX 2 2 HIS A 155 TYR A 157 5 3 HELIX 3 3 GLN A 172 GLY A 195 1 24 HELIX 4 4 THR A 199 ARG A 228 1 30 SHEET 1 AA 2 MET A 129 ALA A 133 0 SHEET 2 AA 2 GLN A 160 TYR A 163 -1 O VAL A 161 N GLY A 131 SSBOND 1 CYS A 179 CYS A 214 1555 1555 2.05 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 TER 1692 ARG A 228 ENDMDL MODEL 2 TER 1692 ARG A 228 ENDMDL MODEL 3 TER 1692 ARG A 228 ENDMDL MODEL 4 TER 1692 ARG A 228 ENDMDL MODEL 5 TER 1692 ARG A 228 ENDMDL MODEL 6 TER 1692 ARG A 228 ENDMDL MODEL 7 TER 1692 ARG A 228 ENDMDL MODEL 8 TER 1692 ARG A 228 ENDMDL MODEL 9 TER 1692 ARG A 228 ENDMDL MODEL 10 TER 1692 ARG A 228 ENDMDL MODEL 11 TER 1692 ARG A 228 ENDMDL MODEL 12 TER 1692 ARG A 228 ENDMDL MODEL 13 TER 1692 ARG A 228 ENDMDL MODEL 14 TER 1692 ARG A 228 ENDMDL MODEL 15 TER 1692 ARG A 228 ENDMDL MODEL 16 TER 1692 ARG A 228 ENDMDL MODEL 17 TER 1692 ARG A 228 ENDMDL MODEL 18 TER 1692 ARG A 228 ENDMDL MODEL 19 TER 1692 ARG A 228 ENDMDL MODEL 20 TER 1692 ARG A 228 ENDMDL CONECT 882 1441 CONECT 1441 882 MASTER 249 0 0 4 2 0 0 6 877 1 2 8 END