HEADER CHAPERONE 06-MAR-03 1HK7 TITLE MIDDLE DOMAIN OF HSP90 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEAT SHOCK PROTEIN HSP82; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: MIDDLE DOMAIN, RESIDUES 273-560; COMPND 5 SYNONYM: HSP90, HSP82, YPL240C; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HEAT SHOCK PROTEIN, ATPASE, CHAPERONE EXPDTA X-RAY DIFFRACTION AUTHOR P.MEYER,C.PRODROMOU,S.M.ROE,L.H.PEARL REVDAT 4 08-MAY-24 1HK7 1 LINK REVDAT 3 08-MAY-19 1HK7 1 REMARK REVDAT 2 24-FEB-09 1HK7 1 VERSN REVDAT 1 29-JAN-04 1HK7 0 JRNL AUTH P.MEYER,C.PRODROMOU,B.HU,C.VAUGHAN,S.M.ROE,B.PANARETOU, JRNL AUTH 2 P.W.PIPER,L.H.PEARL JRNL TITL STRUCTURAL AND FUNCTIONAL ANALYSIS OF THE MIDDLE SEGMENT OF JRNL TITL 2 HSP90. IMPLICATIONS FOR ATP HYDROLYSIS AND CLIENT PROTEIN JRNL TITL 3 AND COCHAPERONE INTERACTIONS JRNL REF MOL.CELL V. 11 647 2003 JRNL REFN ISSN 1097-2765 JRNL PMID 12667448 JRNL DOI 10.1016/S1097-2765(03)00065-0 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.68 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1667469.420 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 55021 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.240 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 2655 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.66 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 8805 REMARK 3 BIN R VALUE (WORKING SET) : 0.3870 REMARK 3 BIN FREE R VALUE : 0.4130 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.40 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 404 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.021 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4093 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 7 REMARK 3 SOLVENT ATOMS : 199 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 71.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 72.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.22000 REMARK 3 B22 (A**2) : 5.22000 REMARK 3 B33 (A**2) : -10.44000 REMARK 3 B12 (A**2) : 12.52000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.40 REMARK 3 ESD FROM SIGMAA (A) : 0.45 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.50 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.56 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.60 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.810 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.920 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 3.350 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.870 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 4.160 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.25 REMARK 3 BSOL : 38.07 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: LOOP A378-A384 NOT VISIBLE IN REMARK 3 STRUCTURE. LOOP B332-B340 NOT VISIBLE IN STRUCTURE. C-TERMINUS REMARK 3 A528-A560 NOT VISIBLE IN STRUCTURE AND C-TERMINUS B529-B560 NOT REMARK 3 VISIBLE IN STRUCTURE. REMARK 4 REMARK 4 1HK7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-MAR-03. REMARK 100 THE DEPOSITION ID IS D_1290012302. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUL-01 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28094 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.900 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 4.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.42200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALS GROWN USING MICROBATCH METHOD REMARK 280 BY MIXING 1UL OF 24MG/ML,PROTEIN IN BUFFER (20MM TRISHCL),PH 7.5, REMARK 280 1MM EDTA, 0.5MM DTT) WITH 1UL OF 11MM CDSO4, 20MM MGCL2, 80MM REMARK 280 TRIS HCL, PH 7.5 AND 5% GLYCEROL., PH 7.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.35300 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 74.70600 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 56.02950 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 93.38250 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 18.67650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 HSP82 IS AN ESSENTIAL PROTEIN THAT IS REQUIRED BY CELLS REMARK 400 FOR GROWTH AT HIGHER TEMPERATURES.THIS PROTEIN IS A REMARK 400 MOLECULAR CHAPERONE WITH ATPASE ACTIVITY. GENERALLY REMARK 400 EXPRESSED AT LOW LEVELS BUT IS STRONGLY INDUCED AT HIGH REMARK 400 TEMPERATURES. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 378 REMARK 465 SER A 379 REMARK 465 ARG A 380 REMARK 465 GLU A 381 REMARK 465 MET A 382 REMARK 465 LEU A 383 REMARK 465 GLN A 384 REMARK 465 GLU A 529 REMARK 465 LEU A 530 REMARK 465 GLU A 531 REMARK 465 GLU A 532 REMARK 465 THR A 533 REMARK 465 ASP A 534 REMARK 465 GLU A 535 REMARK 465 GLU A 536 REMARK 465 LYS A 537 REMARK 465 ALA A 538 REMARK 465 GLU A 539 REMARK 465 ARG A 540 REMARK 465 GLU A 541 REMARK 465 LYS A 542 REMARK 465 GLU A 543 REMARK 465 ILE A 544 REMARK 465 LYS A 545 REMARK 465 GLU A 546 REMARK 465 TYR A 547 REMARK 465 GLU A 548 REMARK 465 PRO A 549 REMARK 465 LEU A 550 REMARK 465 THR A 551 REMARK 465 LYS A 552 REMARK 465 ALA A 553 REMARK 465 LEU A 554 REMARK 465 LYS A 555 REMARK 465 GLU A 556 REMARK 465 ILE A 557 REMARK 465 LEU A 558 REMARK 465 GLY A 559 REMARK 465 ASP A 560 REMARK 465 PHE B 332 REMARK 465 GLU B 333 REMARK 465 SER B 334 REMARK 465 LYS B 335 REMARK 465 LYS B 336 REMARK 465 LYS B 337 REMARK 465 LYS B 338 REMARK 465 ASN B 339 REMARK 465 ASN B 340 REMARK 465 GLU B 529 REMARK 465 LEU B 530 REMARK 465 GLU B 531 REMARK 465 GLU B 532 REMARK 465 THR B 533 REMARK 465 ASP B 534 REMARK 465 GLU B 535 REMARK 465 GLU B 536 REMARK 465 LYS B 537 REMARK 465 ALA B 538 REMARK 465 GLU B 539 REMARK 465 ARG B 540 REMARK 465 GLU B 541 REMARK 465 LYS B 542 REMARK 465 GLU B 543 REMARK 465 ILE B 544 REMARK 465 LYS B 545 REMARK 465 GLU B 546 REMARK 465 TYR B 547 REMARK 465 GLU B 548 REMARK 465 PRO B 549 REMARK 465 LEU B 550 REMARK 465 THR B 551 REMARK 465 LYS B 552 REMARK 465 ALA B 553 REMARK 465 LEU B 554 REMARK 465 LYS B 555 REMARK 465 GLU B 556 REMARK 465 ILE B 557 REMARK 465 LEU B 558 REMARK 465 GLY B 559 REMARK 465 ASP B 560 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 273 OG1 CG2 REMARK 470 PHE A 528 CA C O CB CG CD1 CD2 REMARK 470 PHE A 528 CE1 CE2 CZ REMARK 470 THR B 273 OG1 CG2 REMARK 470 LYS B 366 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 2085 O HOH B 2092 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 376 N - CA - C ANGL. DEV. = 21.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 287 -36.78 73.44 REMARK 500 SER A 295 -9.06 -58.48 REMARK 500 ASP A 330 57.70 39.43 REMARK 500 LYS A 335 -154.39 -76.94 REMARK 500 LYS A 336 -53.05 -157.90 REMARK 500 LYS A 337 90.09 -48.49 REMARK 500 ASN A 339 109.57 -53.01 REMARK 500 ASN A 340 49.42 -93.12 REMARK 500 ILE A 350 -50.62 -131.13 REMARK 500 PRO A 375 -0.39 -58.80 REMARK 500 LEU A 376 144.26 58.83 REMARK 500 ASN A 386 133.40 63.80 REMARK 500 LYS A 514 -63.35 71.50 REMARK 500 GLU A 517 11.94 56.71 REMARK 500 LYS A 526 -75.81 -59.89 REMARK 500 LYS B 274 98.13 64.26 REMARK 500 ASP B 356 31.70 -72.77 REMARK 500 LEU B 376 -43.21 71.46 REMARK 500 ASN B 377 37.16 -84.86 REMARK 500 ASN B 386 100.91 -169.25 REMARK 500 ILE B 388 -86.34 -90.63 REMARK 500 MET B 389 11.72 -24.64 REMARK 500 SER B 450 86.85 -164.60 REMARK 500 LYS B 484 12.52 -140.88 REMARK 500 ALA B 493 63.29 -106.84 REMARK 500 LYS B 494 -3.00 -167.71 REMARK 500 LYS B 514 -55.43 69.66 REMARK 500 THR B 525 2.83 -69.70 REMARK 500 LYS B 526 -115.79 -99.31 REMARK 500 ASP B 527 -150.01 -78.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2033 DISTANCE = 6.18 ANGSTROMS REMARK 525 HOH A2060 DISTANCE = 6.19 ANGSTROMS REMARK 525 HOH A2064 DISTANCE = 5.89 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1533 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 287 OE1 REMARK 620 2 HOH A2005 O 75.1 REMARK 620 3 HOH A2006 O 65.1 139.0 REMARK 620 4 HOH A2011 O 146.9 78.4 133.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A1532 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 372 OE2 REMARK 620 2 GLU B 316 OE1 98.9 REMARK 620 3 GLU B 316 OE2 56.8 46.0 REMARK 620 4 HOH B2030 O 144.2 94.7 139.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A1528 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 406 OE1 REMARK 620 2 GLU A 409 OE1 101.4 REMARK 620 3 GLU A 409 OE2 77.3 56.5 REMARK 620 4 HOH A2048 O 86.7 71.5 120.2 REMARK 620 5 GLU B 406 OE1 166.6 67.6 89.8 96.6 REMARK 620 6 GLU B 406 OE2 146.0 98.9 136.6 74.3 46.8 REMARK 620 7 GLU B 409 OE1 79.9 167.3 135.3 96.0 112.5 74.5 REMARK 620 8 GLU B 409 OE2 97.7 136.4 90.9 148.7 86.2 85.6 54.9 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A1529 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 415 OE1 REMARK 620 2 GLU A 453 OE1 88.7 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A1531 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 430 NE2 REMARK 620 2 GLU A 431 OE1 92.6 REMARK 620 3 GLY B 476 O 157.4 88.0 REMARK 620 4 THR B 502 O 119.1 83.7 83.5 REMARK 620 5 GLU B 507 OE2 66.3 147.6 121.1 85.8 REMARK 620 6 HOH B2092 O 82.9 129.2 79.3 141.6 74.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A1530 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 507 OE1 REMARK 620 2 GLU A 507 OE2 52.5 REMARK 620 3 HOH A2093 O 69.4 109.1 REMARK 620 4 HIS B 430 NE2 86.4 115.5 95.2 REMARK 620 5 HOH B2061 O 145.7 98.0 144.4 93.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B1529 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 415 OE1 REMARK 620 2 GLU B 453 OE1 106.2 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A1528 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A1529 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A1530 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A1531 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A1532 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A1533 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD B1529 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1A4H RELATED DB: PDB REMARK 900 STRUCTURE OF THE N-TERMINAL DOMAIN OF THE YEAST HSP90 CHAPERONE IN REMARK 900 COMPLEX WITH GELDANAMYCIN REMARK 900 RELATED ID: 1AH6 RELATED DB: PDB REMARK 900 STRUCTURE OF THE TETRAGONAL FORM OF THE N -TERMINAL DOMAIN OF THE REMARK 900 YEAST HSP90 CHAPERONE REMARK 900 RELATED ID: 1AH8 RELATED DB: PDB REMARK 900 STRUCTURE OF THE ORTHORHOMBIC FORM OF THE N-TERMINAL DOMAIN OF THE REMARK 900 YEAST HSP90 CHAPERONE REMARK 900 RELATED ID: 1AM1 RELATED DB: PDB REMARK 900 ATP BINDING SITE IN THE HSP90 MOLECULAR CHAPERONE REMARK 900 RELATED ID: 1AMW RELATED DB: PDB REMARK 900 ADP BINDING SITE IN THE HSP90 MOLECULAR CHAPERONE REMARK 900 RELATED ID: 1BGQ RELATED DB: PDB REMARK 900 RADICICOL BOUND TO THE ATP BINDING SITE OF THE N-TERMINAL DOMAIN OF REMARK 900 THE YEAST HSP90 CHAPERONE REMARK 900 RELATED ID: 1US7 RELATED DB: PDB REMARK 900 COMPLEX OF HSP90 AND P50 REMARK 900 RELATED ID: 1USU RELATED DB: PDB REMARK 900 THE STRUCTURE OF THE COMPLEX BETWEEN AHA1 AND HSP90 REMARK 900 RELATED ID: 1USV RELATED DB: PDB REMARK 900 THE STRUCTURE OF THE COMPLEX BETWEEN AHA1 AND HSP90 REMARK 999 REMARK 999 SEQUENCE REMARK 999 MIDDLE DOMAIN ONLY,RESIDUES 273-560 DBREF 1HK7 A 273 560 UNP P02829 HS82_YEAST 273 560 DBREF 1HK7 B 273 560 UNP P02829 HS82_YEAST 273 560 SEQRES 1 A 288 THR LYS PRO LEU TRP THR ARG ASN PRO SER ASP ILE THR SEQRES 2 A 288 GLN GLU GLU TYR ASN ALA PHE TYR LYS SER ILE SER ASN SEQRES 3 A 288 ASP TRP GLU ASP PRO LEU TYR VAL LYS HIS PHE SER VAL SEQRES 4 A 288 GLU GLY GLN LEU GLU PHE ARG ALA ILE LEU PHE ILE PRO SEQRES 5 A 288 LYS ARG ALA PRO PHE ASP LEU PHE GLU SER LYS LYS LYS SEQRES 6 A 288 LYS ASN ASN ILE LYS LEU TYR VAL ARG ARG VAL PHE ILE SEQRES 7 A 288 THR ASP GLU ALA GLU ASP LEU ILE PRO GLU TRP LEU SER SEQRES 8 A 288 PHE VAL LYS GLY VAL VAL ASP SER GLU ASP LEU PRO LEU SEQRES 9 A 288 ASN LEU SER ARG GLU MET LEU GLN GLN ASN LYS ILE MET SEQRES 10 A 288 LYS VAL ILE ARG LYS ASN ILE VAL LYS LYS LEU ILE GLU SEQRES 11 A 288 ALA PHE ASN GLU ILE ALA GLU ASP SER GLU GLN PHE GLU SEQRES 12 A 288 LYS PHE TYR SER ALA PHE SER LYS ASN ILE LYS LEU GLY SEQRES 13 A 288 VAL HIS GLU ASP THR GLN ASN ARG ALA ALA LEU ALA LYS SEQRES 14 A 288 LEU LEU ARG TYR ASN SER THR LYS SER VAL ASP GLU LEU SEQRES 15 A 288 THR SER LEU THR ASP TYR VAL THR ARG MET PRO GLU HIS SEQRES 16 A 288 GLN LYS ASN ILE TYR TYR ILE THR GLY GLU SER LEU LYS SEQRES 17 A 288 ALA VAL GLU LYS SER PRO PHE LEU ASP ALA LEU LYS ALA SEQRES 18 A 288 LYS ASN PHE GLU VAL LEU PHE LEU THR ASP PRO ILE ASP SEQRES 19 A 288 GLU TYR ALA PHE THR GLN LEU LYS GLU PHE GLU GLY LYS SEQRES 20 A 288 THR LEU VAL ASP ILE THR LYS ASP PHE GLU LEU GLU GLU SEQRES 21 A 288 THR ASP GLU GLU LYS ALA GLU ARG GLU LYS GLU ILE LYS SEQRES 22 A 288 GLU TYR GLU PRO LEU THR LYS ALA LEU LYS GLU ILE LEU SEQRES 23 A 288 GLY ASP SEQRES 1 B 288 THR LYS PRO LEU TRP THR ARG ASN PRO SER ASP ILE THR SEQRES 2 B 288 GLN GLU GLU TYR ASN ALA PHE TYR LYS SER ILE SER ASN SEQRES 3 B 288 ASP TRP GLU ASP PRO LEU TYR VAL LYS HIS PHE SER VAL SEQRES 4 B 288 GLU GLY GLN LEU GLU PHE ARG ALA ILE LEU PHE ILE PRO SEQRES 5 B 288 LYS ARG ALA PRO PHE ASP LEU PHE GLU SER LYS LYS LYS SEQRES 6 B 288 LYS ASN ASN ILE LYS LEU TYR VAL ARG ARG VAL PHE ILE SEQRES 7 B 288 THR ASP GLU ALA GLU ASP LEU ILE PRO GLU TRP LEU SER SEQRES 8 B 288 PHE VAL LYS GLY VAL VAL ASP SER GLU ASP LEU PRO LEU SEQRES 9 B 288 ASN LEU SER ARG GLU MET LEU GLN GLN ASN LYS ILE MET SEQRES 10 B 288 LYS VAL ILE ARG LYS ASN ILE VAL LYS LYS LEU ILE GLU SEQRES 11 B 288 ALA PHE ASN GLU ILE ALA GLU ASP SER GLU GLN PHE GLU SEQRES 12 B 288 LYS PHE TYR SER ALA PHE SER LYS ASN ILE LYS LEU GLY SEQRES 13 B 288 VAL HIS GLU ASP THR GLN ASN ARG ALA ALA LEU ALA LYS SEQRES 14 B 288 LEU LEU ARG TYR ASN SER THR LYS SER VAL ASP GLU LEU SEQRES 15 B 288 THR SER LEU THR ASP TYR VAL THR ARG MET PRO GLU HIS SEQRES 16 B 288 GLN LYS ASN ILE TYR TYR ILE THR GLY GLU SER LEU LYS SEQRES 17 B 288 ALA VAL GLU LYS SER PRO PHE LEU ASP ALA LEU LYS ALA SEQRES 18 B 288 LYS ASN PHE GLU VAL LEU PHE LEU THR ASP PRO ILE ASP SEQRES 19 B 288 GLU TYR ALA PHE THR GLN LEU LYS GLU PHE GLU GLY LYS SEQRES 20 B 288 THR LEU VAL ASP ILE THR LYS ASP PHE GLU LEU GLU GLU SEQRES 21 B 288 THR ASP GLU GLU LYS ALA GLU ARG GLU LYS GLU ILE LYS SEQRES 22 B 288 GLU TYR GLU PRO LEU THR LYS ALA LEU LYS GLU ILE LEU SEQRES 23 B 288 GLY ASP HET CD A1528 1 HET CD A1529 1 HET CD A1530 1 HET CD A1531 1 HET CD A1532 1 HET MG A1533 1 HET CD B1529 1 HETNAM CD CADMIUM ION HETNAM MG MAGNESIUM ION FORMUL 3 CD 6(CD 2+) FORMUL 8 MG MG 2+ FORMUL 10 HOH *199(H2 O) HELIX 1 1 PRO A 275 ARG A 279 5 5 HELIX 2 2 GLU A 287 ASN A 298 1 12 HELIX 3 3 PRO A 359 SER A 363 5 5 HELIX 4 4 ASN A 386 ALA A 408 1 23 HELIX 5 5 ASP A 410 ASP A 432 1 23 HELIX 6 6 ASN A 435 LYS A 441 1 7 HELIX 7 7 SER A 456 MET A 464 1 9 HELIX 8 8 SER A 478 LYS A 484 1 7 HELIX 9 9 SER A 485 PHE A 487 5 3 HELIX 10 10 LEU A 488 ALA A 493 1 6 HELIX 11 11 ASP A 503 LYS A 514 1 12 HELIX 12 12 ASN B 280 ILE B 284 5 5 HELIX 13 13 THR B 285 ASN B 298 1 14 HELIX 14 14 ALA B 354 ILE B 358 5 5 HELIX 15 15 PRO B 359 SER B 363 5 5 HELIX 16 16 SER B 379 GLN B 384 1 6 HELIX 17 17 MET B 389 GLU B 409 1 21 HELIX 18 18 ASP B 410 ASP B 432 1 23 HELIX 19 19 ASN B 435 LYS B 441 1 7 HELIX 20 20 LEU B 457 ARG B 463 1 7 HELIX 21 21 SER B 478 GLU B 483 1 6 HELIX 22 22 LEU B 488 ALA B 493 1 6 HELIX 23 23 ASP B 503 LYS B 514 1 12 SHEET 1 AA 5 TYR A 305 VAL A 311 0 SHEET 2 AA 5 PHE A 317 ILE A 323 -1 O PHE A 317 N VAL A 311 SHEET 3 AA 5 LYS A 366 SER A 371 -1 O LYS A 366 N PHE A 322 SHEET 4 AA 5 LYS A 342 VAL A 345 1 O LYS A 342 N VAL A 369 SHEET 5 AA 5 VAL A 348 THR A 351 -1 O VAL A 348 N VAL A 345 SHEET 1 AB 5 ASN A 446 SER A 447 0 SHEET 2 AB 5 LEU A 499 LEU A 501 -1 O PHE A 500 N ASN A 446 SHEET 3 AB 5 ASN A 470 THR A 475 1 O TYR A 472 N LEU A 499 SHEET 4 AB 5 LYS A 519 ASP A 523 1 O THR A 520 N ILE A 471 SHEET 5 AB 5 GLU A 515 PHE A 516 -1 O PHE A 516 N LYS A 519 SHEET 1 BA 5 TYR B 305 VAL B 311 0 SHEET 2 BA 5 PHE B 317 ILE B 323 -1 O PHE B 317 N VAL B 311 SHEET 3 BA 5 LYS B 366 SER B 371 -1 O LYS B 366 N PHE B 322 SHEET 4 BA 5 LYS B 342 VAL B 345 1 O LYS B 342 N VAL B 369 SHEET 5 BA 5 VAL B 348 THR B 351 -1 O VAL B 348 N VAL B 345 SHEET 1 BB 6 SER B 450 SER B 456 0 SHEET 2 BB 6 ARG B 444 SER B 447 -1 O TYR B 445 N THR B 455 SHEET 3 BB 6 VAL B 498 PHE B 500 -1 O PHE B 500 N ASN B 446 SHEET 4 BB 6 ILE B 471 ILE B 474 1 O TYR B 472 N LEU B 499 SHEET 5 BB 6 LYS B 519 ASP B 523 1 O THR B 520 N ILE B 471 SHEET 6 BB 6 GLU B 515 PHE B 516 -1 O PHE B 516 N LYS B 519 LINK OE1 GLU A 287 MG MG A1533 1555 1555 3.07 LINK OE2 GLU A 372 CD CD A1532 1555 1555 2.62 LINK OE1 GLU A 406 CD CD A1528 1555 1555 2.63 LINK OE1 GLU A 409 CD CD A1528 1555 1555 2.22 LINK OE2 GLU A 409 CD CD A1528 1555 1555 2.39 LINK OE1 GLU A 415 CD CD A1529 1555 1555 3.09 LINK NE2 HIS A 430 CD CD A1531 1555 1555 2.66 LINK OE1 GLU A 431 CD CD A1531 1555 1555 2.98 LINK OE1 GLU A 453 CD CD A1529 1555 1555 3.12 LINK OE1 GLU A 507 CD CD A1530 1555 1555 2.48 LINK OE2 GLU A 507 CD CD A1530 1555 1555 2.55 LINK CD CD A1528 O HOH A2048 1555 1555 2.31 LINK CD CD A1528 OE1 GLU B 406 1555 1555 2.77 LINK CD CD A1528 OE2 GLU B 406 1555 1555 2.77 LINK CD CD A1528 OE1 GLU B 409 1555 1555 2.32 LINK CD CD A1528 OE2 GLU B 409 1555 1555 2.44 LINK CD CD A1530 O HOH A2093 1555 1555 2.24 LINK CD CD A1530 NE2 HIS B 430 1555 5564 2.40 LINK CD CD A1530 O HOH B2061 1555 5564 2.28 LINK CD CD A1531 O GLY B 476 1555 5564 2.59 LINK CD CD A1531 O THR B 502 1555 5564 2.88 LINK CD CD A1531 OE2 GLU B 507 1555 5564 2.42 LINK CD CD A1531 O HOH B2092 1555 5564 2.20 LINK CD CD A1532 OE1 GLU B 316 1555 4665 2.71 LINK CD CD A1532 OE2 GLU B 316 1555 4665 2.92 LINK CD CD A1532 O HOH B2030 1555 4665 2.30 LINK MG MG A1533 O HOH A2005 1555 1555 2.54 LINK MG MG A1533 O HOH A2006 1555 1555 3.00 LINK MG MG A1533 O HOH A2011 1555 1555 2.67 LINK OE1 GLU B 415 CD CD B1529 1555 1555 2.75 LINK OE1 GLU B 453 CD CD B1529 1555 1555 2.71 SITE 1 AC1 5 GLU A 406 GLU A 409 HOH A2048 GLU B 406 SITE 2 AC1 5 GLU B 409 SITE 1 AC2 3 GLU A 412 GLU A 415 GLU A 453 SITE 1 AC3 4 GLU A 507 HOH A2093 HIS B 430 HOH B2061 SITE 1 AC4 6 HIS A 430 GLU A 431 GLY B 476 THR B 502 SITE 2 AC4 6 GLU B 507 HOH B2092 SITE 1 AC5 5 GLU A 372 ASP A 373 GLU B 316 GLU B 372 SITE 2 AC5 5 HOH B2030 SITE 1 AC6 5 GLU A 287 ASP A 302 HOH A2005 HOH A2006 SITE 2 AC6 5 HOH A2011 SITE 1 AC7 3 GLU B 412 GLU B 415 GLU B 453 CRYST1 112.879 112.879 112.059 90.00 90.00 120.00 P 61 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008859 0.005115 0.000000 0.00000 SCALE2 0.000000 0.010229 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008924 0.00000