HEADER TRANCRIPTION CO-REPRESSOR 13-MAR-03 1HL3 TITLE CTBP/BARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: C-TERMINAL BINDING PROTEIN 3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1-350; COMPND 5 SYNONYM: CTBP3; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: PRO-ILE-ASP-LEU-SER-LYS-LYS PEPTIDE; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 ORGAN: BRAIN; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET11D-HIS; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630 KEYWDS TRANCRIPTION CO-REPRESSOR, TRANSCRIPTION CO-REPRESSION, KEYWDS 2 ACYLTRANSFERASE, BREFELDIN A, NAD, GOLGI MEMBRANE, ACYL-COA EXPDTA X-RAY DIFFRACTION AUTHOR M.NARDINI,S.SPANO,C.CERICOLA,A.PESCE,A.MASSARO,E.MILLO,A.LUINI, AUTHOR 2 D.CORDA,M.BOLOGNESI REVDAT 4 13-DEC-23 1HL3 1 REMARK REVDAT 3 21-DEC-16 1HL3 1 SOURCE KEYWDS AUTHOR JRNL REVDAT 3 2 1 REMARK VERSN DBREF SEQADV REVDAT 3 3 1 FORMUL MASTER REVDAT 2 24-FEB-09 1HL3 1 VERSN REVDAT 1 19-JUN-03 1HL3 0 JRNL AUTH M.NARDINI,S.SPANO,C.CERICOLA,A.PESCE,A.MASSARO,E.MILLO, JRNL AUTH 2 A.LUINI,D.CORDA,M.BOLOGNESI JRNL TITL CTBP/BARS: A DUAL-FUNCTION PROTEIN INVOLVED IN TRANSCRIPTION JRNL TITL 2 CO-REPRESSION AND GOLGI MEMBRANE FISSION JRNL REF EMBO J. V. 22 3122 2003 JRNL REFN ISSN 0261-4189 JRNL PMID 12805226 JRNL DOI 10.1093/EMBOJ/CDG283 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.NARDINI,S.SPANO,C.CERICOLA,A.PESCE,G.DAMONTE,A.LUINI, REMARK 1 AUTH 2 D.CORDA,M.BOLOGNESI REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY X-RAY DIFFRACTION ANALYSIS REMARK 1 TITL 2 OF BREFELDIN A-ADP RIBOSYLATED SUBSTRATE (BARS) REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. D58 1068 2002 REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 12037320 REMARK 1 DOI 10.1107/S0907444902006984 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 90.8 REMARK 3 NUMBER OF REFLECTIONS : 6060 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.256 REMARK 3 FREE R VALUE : 0.315 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 668 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2617 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 44 REMARK 3 SOLVENT ATOMS : 36 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.004 REMARK 3 BOND ANGLES (DEGREES) : 1.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NO DENSITY FOR THE HIS-TAG REMARK 3 (MGHHHHHH),AND FOR RESIDUES MET A1- HIS A14 AND THR A346-HIS REMARK 3 A350. ATOM OXT OF LEU A345 WAS CHANGED TO ATOM N OF THR A346 IN REMARK 3 ORDER TO COMPLY WITH THE PDB FORMAT. THIS CHANGE MAKES NO REMARK 3 DECISION ON THE DIRECTION IN WHICH THE CHAIN BRANCHES. REMARK 4 REMARK 4 1HL3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-MAR-03. REMARK 100 THE DEPOSITION ID IS D_1290012367. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.93300 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6482 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.12500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 0.46000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1HKU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0 M AMMONIUM FORMATE, 100 MM HEPES, REMARK 280 PH 7.5.CRYSTAL SOAKED IN 5MM PEPTIDE (PIDLSKK), PH 7.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.23967 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 106.47933 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 53.23967 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 106.47933 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 53.23967 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 106.47933 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 53.23967 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 106.47933 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: CHAIN A FORMS A DIMERIC COMPLEX, BUT SINCE REMARK 300 IT IS INCOMPLEX WITH PEPTIDE CHAIN B, THESE REMARK 300 RECORDS INDICATEA TETRAMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 42.40550 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 73.44848 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 53.23967 REMARK 400 REMARK 400 COMPOUND REMARK 400 POSSIBLLY NVOLVED IN CONTROLLING THE EQUILIBRIUM BETWEEN REMARK 400 TUBULAR AND STACKED STRUCTURES IN THE GOLGI COMPLEX. REMARK 400 REMARK 400 PIDLSKK (B1-7) PEPTIDE BOUND TO CTBP/BARS REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 GLY A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLY A 3 REMARK 465 VAL A 4 REMARK 465 ARG A 5 REMARK 465 PRO A 6 REMARK 465 PRO A 7 REMARK 465 ILE A 8 REMARK 465 MET A 9 REMARK 465 ASN A 10 REMARK 465 GLY A 11 REMARK 465 PRO A 12 REMARK 465 MET A 13 REMARK 465 HIS A 14 REMARK 465 ALA A 347 REMARK 465 ALA A 348 REMARK 465 THR A 349 REMARK 465 HIS A 350 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 346 CA C O CB OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 17 165.87 -49.32 REMARK 500 LEU A 22 -76.38 -42.52 REMARK 500 ARG A 25 32.85 -152.84 REMARK 500 PRO A 32 -9.37 -54.41 REMARK 500 GLU A 58 72.75 -118.42 REMARK 500 TYR A 65 -118.12 -94.40 REMARK 500 THR A 67 29.75 -65.07 REMARK 500 GLN A 146 -76.57 -98.23 REMARK 500 SER A 156 99.07 -55.02 REMARK 500 ARG A 162 109.75 -54.52 REMARK 500 LEU A 171 59.19 -102.88 REMARK 500 ASP A 193 86.76 -154.79 REMARK 500 HIS A 225 34.52 -142.86 REMARK 500 ASN A 229 -158.08 -158.45 REMARK 500 ALA A 254 -88.00 -110.75 REMARK 500 LEU A 293 21.26 -76.17 REMARK 500 ASN A 298 75.59 38.89 REMARK 500 PRO A 303 51.63 -68.49 REMARK 500 SER A 309 127.47 177.59 REMARK 500 ASP A 334 0.72 -55.81 REMARK 500 LYS B 6 82.68 -56.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 144 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2003 DISTANCE = 7.15 ANGSTROMS REMARK 525 HOH A2007 DISTANCE = 7.23 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A 600 REMARK 999 REMARK 999 SEQUENCE REMARK 999 HIS-TAG (MGHHHHHH), TRUNCATION AFTER RESIDUE 350 DBREF 1HL3 A 1 350 UNP Q9Z2F5 CTBP1_RAT 1 350 DBREF 1HL3 B 1 7 PDB 1HL3 1HL3 1 7 SEQADV 1HL3 MET A -7 UNP Q9Z2F5 EXPRESSION TAG SEQADV 1HL3 GLY A -6 UNP Q9Z2F5 EXPRESSION TAG SEQADV 1HL3 HIS A -5 UNP Q9Z2F5 EXPRESSION TAG SEQADV 1HL3 HIS A -4 UNP Q9Z2F5 EXPRESSION TAG SEQADV 1HL3 HIS A -3 UNP Q9Z2F5 EXPRESSION TAG SEQADV 1HL3 HIS A -2 UNP Q9Z2F5 EXPRESSION TAG SEQADV 1HL3 HIS A -1 UNP Q9Z2F5 EXPRESSION TAG SEQADV 1HL3 HIS A 0 UNP Q9Z2F5 EXPRESSION TAG SEQRES 1 A 358 MET GLY HIS HIS HIS HIS HIS HIS MET SER GLY VAL ARG SEQRES 2 A 358 PRO PRO ILE MET ASN GLY PRO MET HIS PRO ARG PRO LEU SEQRES 3 A 358 VAL ALA LEU LEU ASP GLY ARG ASP CYS THR VAL GLU MET SEQRES 4 A 358 PRO ILE LEU LYS ASP VAL ALA THR VAL ALA PHE CYS ASP SEQRES 5 A 358 ALA GLN SER THR GLN GLU ILE HIS GLU LYS VAL LEU ASN SEQRES 6 A 358 GLU ALA VAL GLY ALA LEU MET TYR HIS THR ILE THR LEU SEQRES 7 A 358 THR ARG GLU ASP LEU GLU LYS PHE LYS ALA LEU ARG ILE SEQRES 8 A 358 ILE VAL ARG ILE GLY SER GLY PHE ASP ASN ILE ASP ILE SEQRES 9 A 358 LYS SER ALA GLY ASP LEU GLY ILE ALA VAL CYS ASN VAL SEQRES 10 A 358 PRO ALA ALA SER VAL GLU GLU THR ALA ASP SER THR LEU SEQRES 11 A 358 CYS HIS ILE LEU ASN LEU TYR ARG ARG THR THR TRP LEU SEQRES 12 A 358 HIS GLN ALA LEU ARG GLU GLY THR ARG VAL GLN SER VAL SEQRES 13 A 358 GLU GLN ILE ARG GLU VAL ALA SER GLY ALA ALA ARG ILE SEQRES 14 A 358 ARG GLY GLU THR LEU GLY ILE ILE GLY LEU GLY ARG VAL SEQRES 15 A 358 GLY GLN ALA VAL ALA LEU ARG ALA LYS ALA PHE GLY PHE SEQRES 16 A 358 ASN VAL LEU PHE TYR ASP PRO TYR LEU SER ASP GLY ILE SEQRES 17 A 358 GLU ARG ALA LEU GLY LEU GLN ARG VAL SER THR LEU GLN SEQRES 18 A 358 ASP LEU LEU PHE HIS SER ASP CYS VAL THR LEU HIS CYS SEQRES 19 A 358 GLY LEU ASN GLU HIS ASN HIS HIS LEU ILE ASN ASP PHE SEQRES 20 A 358 THR VAL LYS GLN MET ARG GLN GLY ALA PHE LEU VAL ASN SEQRES 21 A 358 THR ALA ARG GLY GLY LEU VAL ASP GLU LYS ALA LEU ALA SEQRES 22 A 358 GLN ALA LEU LYS GLU GLY ARG ILE ARG GLY ALA ALA LEU SEQRES 23 A 358 ASP VAL HIS GLU SER GLU PRO PHE SER PHE SER GLN GLY SEQRES 24 A 358 PRO LEU LYS ASP ALA PRO ASN LEU ILE CYS THR PRO HIS SEQRES 25 A 358 ALA ALA TRP TYR SER GLU GLN ALA SER ILE GLU MET ARG SEQRES 26 A 358 GLU GLU ALA ALA ARG GLU ILE ARG ARG ALA ILE THR GLY SEQRES 27 A 358 ARG ILE PRO ASP SER LEU LYS ASN CYS VAL ASN LYS ASP SEQRES 28 A 358 HIS LEU THR ALA ALA THR HIS SEQRES 1 B 7 PRO ILE ASP LEU SER LYS LYS HET NAD A 600 44 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE FORMUL 3 NAD C21 H27 N7 O14 P2 FORMUL 4 HOH *36(H2 O) HELIX 1 1 GLU A 30 LYS A 35 1 6 HELIX 2 2 HIS A 52 GLU A 58 1 7 HELIX 3 3 THR A 71 GLU A 76 1 6 HELIX 4 4 ASP A 95 LEU A 102 1 8 HELIX 5 5 SER A 113 ARG A 130 1 18 HELIX 6 6 ARG A 131 ARG A 140 1 10 HELIX 7 7 SER A 147 ALA A 155 1 9 HELIX 8 8 GLY A 172 PHE A 185 1 14 HELIX 9 9 GLY A 199 GLY A 205 1 7 HELIX 10 10 THR A 211 SER A 219 1 9 HELIX 11 11 ASN A 237 GLN A 243 1 7 HELIX 12 12 ARG A 255 LEU A 258 5 4 HELIX 13 13 ASP A 260 GLY A 271 1 12 HELIX 14 14 GLY A 291 ALA A 296 5 6 HELIX 15 15 SER A 309 GLY A 330 1 22 SHEET 1 AA 6 ALA A 105 ASN A 108 0 SHEET 2 AA 6 ILE A 83 ARG A 86 1 O ILE A 84 N CYS A 107 SHEET 3 AA 6 GLY A 61 MET A 64 1 O ALA A 62 N VAL A 85 SHEET 4 AA 6 LEU A 18 LEU A 21 1 O LEU A 18 N GLY A 61 SHEET 5 AA 6 THR A 39 PHE A 42 1 O THR A 39 N VAL A 19 SHEET 6 AA 6 ILE B 2 ASP B 3 1 O ILE B 2 N PHE A 42 SHEET 1 AB 7 GLN A 207 ARG A 208 0 SHEET 2 AB 7 LEU A 190 TYR A 192 1 N PHE A 191 O GLN A 207 SHEET 3 AB 7 LEU A 166 ILE A 169 1 O LEU A 166 N LEU A 190 SHEET 4 AB 7 CYS A 221 LEU A 224 1 O CYS A 221 N GLY A 167 SHEET 5 AB 7 PHE A 249 ASN A 252 1 O PHE A 249 N VAL A 222 SHEET 6 AB 7 GLY A 275 LEU A 278 1 O GLY A 275 N LEU A 250 SHEET 7 AB 7 LEU A 299 CYS A 301 1 O ILE A 300 N LEU A 278 CISPEP 1 GLU A 284 PRO A 285 0 -0.06 CISPEP 2 ILE A 332 PRO A 333 0 -0.10 SITE 1 AC1 22 SER A 89 THR A 117 GLY A 170 GLY A 172 SITE 2 AC1 22 ARG A 173 VAL A 174 TYR A 192 ASP A 193 SITE 3 AC1 22 PRO A 194 TYR A 195 HIS A 225 CYS A 226 SITE 4 AC1 22 GLY A 227 ASN A 229 ASN A 232 THR A 253 SITE 5 AC1 22 ALA A 254 ARG A 255 ASP A 279 VAL A 280 SITE 6 AC1 22 HIS A 304 TRP A 307 CRYST1 84.811 84.811 159.719 90.00 90.00 120.00 P 64 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011791 0.006807 0.000000 0.00000 SCALE2 0.000000 0.013615 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006261 0.00000