data_1HO6 # _entry.id 1HO6 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1HO6 pdb_00001ho6 10.2210/pdb1ho6/pdb RCSB RCSB012479 ? ? WWPDB D_1000012479 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2001-11-07 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-02-23 5 'Structure model' 1 4 2024-05-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 5 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_struct_assembly 3 4 'Structure model' pdbx_struct_oper_list 4 4 'Structure model' struct_conn 5 5 'Structure model' chem_comp_atom 6 5 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1HO6 _pdbx_database_status.recvd_initial_deposition_date 2000-12-08 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1FC8 ;1FC8 contains the same hairpin but with 2'F-ANA instead of ANA ; unspecified PDB 1HOQ '1HOQ contains the same hairpin but with RNA/DNA stem' unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Denisov, A.Y.' 1 'Gehring, K.' 2 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary ;Solution structure of an arabinonucleic acid (ANA)/RNA duplex in a chimeric hairpin: comparison with 2'-fluoro-ANA/RNA and DNA/RNA hybrids. ; 'Nucleic Acids Res.' 29 4284 4293 2001 NARHAD UK 0305-1048 0389 ? 11691916 10.1093/nar/29.21.4284 1 ;Properties of Arabinonucleic Acids (ANA & 2'F-ANA): Implications for the Design of Antisense Therapeutics that Invoke RNase H Cleavage of RNA ; 'Nucleosides and Nucleotides' 20 429 440 2001 NUNUD5 US 0732-8311 0653 ? ? 10.1081/NCN-100002317 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Denisov, A.Y.' 1 ? primary 'Noronha, A.M.' 2 ? primary 'Wilds, C.J.' 3 ? primary 'Trempe, J.F.' 4 ? primary 'Pon, R.T.' 5 ? primary 'Gehring, K.' 6 ? primary 'Damha, M.J.' 7 ? 1 'Damha, M.J.' 8 ? 1 'Noronha, A.M.' 9 ? 1 'Wilds, C.J.' 10 ? 1 'Trempe, J.F.' 11 ? 1 'Denisov, A.Y.' 12 ? 1 'Pon, R.T.' 13 ? 1 'Gehring, K.' 14 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description ;DNA/RNA (5'-R(*GP*GP*AP*C)-D(P*TP*TP*CP*G)-(P*(GAO)P*(UAR)P*(CAR)P*(CAR)-3') ; _entity.formula_weight 3768.350 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polydeoxyribonucleotide/polyribonucleotide hybrid' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'GGAC(DT)(DT)(DC)(DG)(GAO)(UAR)(CAR)(CAR)' _entity_poly.pdbx_seq_one_letter_code_can GGACTTCGGUCC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 A n 1 4 C n 1 5 DT n 1 6 DT n 1 7 DC n 1 8 DG n 1 9 GAO n 1 10 UAR n 1 11 CAR n 1 12 CAR n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'Solid phase synthesis, phosphoramidite chemistry' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CAR 'RNA linking' n ;CYTOSINE ARABINOSE-5'-PHOSPHATE ; ? 'C9 H14 N3 O8 P' 323.197 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GAO 'RNA linking' n ;GUANINE ARABINOSE-5'-PHOSPHATE ; ? 'C10 H14 N5 O8 P' 363.221 UAR 'RNA linking' n ;URACIL ARABINOSE-5'-PHOSPHATE ; ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 G 2 2 2 G G A . n A 1 3 A 3 3 3 A A A . n A 1 4 C 4 4 4 C C A . n A 1 5 DT 5 5 5 DT T A . n A 1 6 DT 6 6 6 DT T A . n A 1 7 DC 7 7 7 DC C A . n A 1 8 DG 8 8 8 DG G A . n A 1 9 GAO 9 9 9 GAO +G A . n A 1 10 UAR 10 10 10 UAR +U A . n A 1 11 CAR 11 11 11 CAR +C A . n A 1 12 CAR 12 12 12 CAR +C A . n # _exptl.entry_id 1HO6 _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _database_PDB_matrix.entry_id 1HO6 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1HO6 _struct.title 'CHIMERIC ARABINONUCLEIC ACID (ANA) HAIRPIN WITH ANA/RNA HYBRID STEM' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1HO6 _struct_keywords.pdbx_keywords 'DNA, RNA' _struct_keywords.text 'Arabinonucleic acid, RNA, Hairpin, DNA' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1HO6 _struct_ref.pdbx_db_accession 1HO6 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1HO6 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 12 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 1HO6 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 12 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 12 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DG 8 "O3'" ? ? ? 1_555 A GAO 9 P ? ? A DG 8 A GAO 9 1_555 ? ? ? ? ? ? ? 1.609 ? ? covale2 covale both ? A GAO 9 "O3'" ? ? ? 1_555 A UAR 10 P ? ? A GAO 9 A UAR 10 1_555 ? ? ? ? ? ? ? 1.614 ? ? covale3 covale both ? A UAR 10 "O3'" ? ? ? 1_555 A CAR 11 P ? ? A UAR 10 A CAR 11 1_555 ? ? ? ? ? ? ? 1.614 ? ? covale4 covale both ? A CAR 11 "O3'" ? ? ? 1_555 A CAR 12 P ? ? A CAR 11 A CAR 12 1_555 ? ? ? ? ? ? ? 1.612 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A CAR 12 N3 ? ? A G 1 A CAR 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A CAR 12 O2 ? ? A G 1 A CAR 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A CAR 12 N4 ? ? A G 1 A CAR 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A CAR 11 N3 ? ? A G 2 A CAR 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 A CAR 11 O2 ? ? A G 2 A CAR 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 A CAR 11 N4 ? ? A G 2 A CAR 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A A 3 N1 ? ? ? 1_555 A UAR 10 N3 ? ? A A 3 A UAR 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A A 3 N6 ? ? ? 1_555 A UAR 10 O4 ? ? A A 3 A UAR 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 4 N3 ? ? ? 1_555 A GAO 9 N1 ? ? A C 4 A GAO 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 4 N4 ? ? ? 1_555 A GAO 9 O6 ? ? A C 4 A GAO 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 4 O2 ? ? ? 1_555 A GAO 9 N2 ? ? A C 4 A GAO 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DT 5 O2 ? ? ? 1_555 A GAO 9 N1 ? ? A DT 5 A GAO 9 1_555 ? ? ? ? ? ? 'DT-GAO MISPAIR' ? ? ? hydrog13 hydrog ? ? A DG 8 N2 ? ? ? 1_555 A GAO 9 O6 ? ? A DG 8 A GAO 9 1_555 ? ? ? ? ? ? 'DG-GAO MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 2 "H2'" A DT 5 ? ? "O4'" A DT 6 ? ? 1.57 2 2 "HO2'" A G 1 ? ? "O5'" A G 2 ? ? 1.60 3 3 "HO2'" A G 2 ? ? "O5'" A A 3 ? ? 1.59 4 4 "HO2'" A G 1 ? ? "O5'" A G 2 ? ? 1.59 5 9 "HO2'" A G 2 ? ? "O5'" A A 3 ? ? 1.55 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N7 A G 1 ? ? C8 A G 1 ? ? N9 A G 1 ? ? 117.54 113.10 4.44 0.50 N 2 1 N7 A G 2 ? ? C8 A G 2 ? ? N9 A G 2 ? ? 117.81 113.10 4.71 0.50 N 3 1 C8 A G 2 ? ? N9 A G 2 ? ? C4 A G 2 ? ? 103.87 106.40 -2.53 0.40 N 4 1 N7 A A 3 ? ? C8 A A 3 ? ? N9 A A 3 ? ? 117.56 113.80 3.76 0.50 N 5 1 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 111.01 108.30 2.71 0.30 N 6 1 "O4'" A DT 6 ? ? "C1'" A DT 6 ? ? N1 A DT 6 ? ? 111.04 108.30 2.74 0.30 N 7 1 "O4'" A DC 7 ? ? "C1'" A DC 7 ? ? N1 A DC 7 ? ? 110.78 108.30 2.48 0.30 N 8 1 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 112.17 108.30 3.87 0.30 N 9 1 N7 A DG 8 ? ? C8 A DG 8 ? ? N9 A DG 8 ? ? 117.71 113.10 4.61 0.50 N 10 1 C8 A DG 8 ? ? N9 A DG 8 ? ? C4 A DG 8 ? ? 103.63 106.40 -2.77 0.40 N 11 2 N7 A G 1 ? ? C8 A G 1 ? ? N9 A G 1 ? ? 117.50 113.10 4.40 0.50 N 12 2 N7 A G 2 ? ? C8 A G 2 ? ? N9 A G 2 ? ? 118.09 113.10 4.99 0.50 N 13 2 C8 A G 2 ? ? N9 A G 2 ? ? C4 A G 2 ? ? 103.98 106.40 -2.42 0.40 N 14 2 N7 A A 3 ? ? C8 A A 3 ? ? N9 A A 3 ? ? 117.41 113.80 3.61 0.50 N 15 2 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 112.03 108.30 3.73 0.30 N 16 2 C6 A DT 6 ? ? C5 A DT 6 ? ? C7 A DT 6 ? ? 119.19 122.90 -3.71 0.60 N 17 2 "O4'" A DC 7 ? ? "C1'" A DC 7 ? ? N1 A DC 7 ? ? 110.71 108.30 2.41 0.30 N 18 2 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 111.08 108.30 2.78 0.30 N 19 2 N7 A DG 8 ? ? C8 A DG 8 ? ? N9 A DG 8 ? ? 117.74 113.10 4.64 0.50 N 20 2 C8 A DG 8 ? ? N9 A DG 8 ? ? C4 A DG 8 ? ? 103.86 106.40 -2.54 0.40 N 21 3 N7 A G 1 ? ? C8 A G 1 ? ? N9 A G 1 ? ? 117.83 113.10 4.73 0.50 N 22 3 C8 A G 1 ? ? N9 A G 1 ? ? C4 A G 1 ? ? 103.78 106.40 -2.62 0.40 N 23 3 N7 A G 2 ? ? C8 A G 2 ? ? N9 A G 2 ? ? 117.52 113.10 4.42 0.50 N 24 3 N7 A A 3 ? ? C8 A A 3 ? ? N9 A A 3 ? ? 117.60 113.80 3.80 0.50 N 25 3 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 111.40 108.30 3.10 0.30 N 26 3 "O4'" A DT 6 ? ? "C1'" A DT 6 ? ? N1 A DT 6 ? ? 111.01 108.30 2.71 0.30 N 27 3 "O4'" A DC 7 ? ? "C1'" A DC 7 ? ? N1 A DC 7 ? ? 111.75 108.30 3.45 0.30 N 28 3 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 110.51 108.30 2.21 0.30 N 29 3 N7 A DG 8 ? ? C8 A DG 8 ? ? N9 A DG 8 ? ? 117.81 113.10 4.71 0.50 N 30 3 C8 A DG 8 ? ? N9 A DG 8 ? ? C4 A DG 8 ? ? 103.75 106.40 -2.65 0.40 N 31 4 N7 A G 1 ? ? C8 A G 1 ? ? N9 A G 1 ? ? 117.61 113.10 4.51 0.50 N 32 4 N7 A G 2 ? ? C8 A G 2 ? ? N9 A G 2 ? ? 117.89 113.10 4.79 0.50 N 33 4 N7 A A 3 ? ? C8 A A 3 ? ? N9 A A 3 ? ? 117.39 113.80 3.59 0.50 N 34 4 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 112.06 108.30 3.76 0.30 N 35 4 "O4'" A DT 6 ? ? "C1'" A DT 6 ? ? N1 A DT 6 ? ? 110.16 108.30 1.86 0.30 N 36 4 C6 A DT 6 ? ? C5 A DT 6 ? ? C7 A DT 6 ? ? 119.06 122.90 -3.84 0.60 N 37 4 "O4'" A DC 7 ? ? "C1'" A DC 7 ? ? N1 A DC 7 ? ? 111.42 108.30 3.12 0.30 N 38 4 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 110.38 108.30 2.08 0.30 N 39 4 N7 A DG 8 ? ? C8 A DG 8 ? ? N9 A DG 8 ? ? 117.81 113.10 4.71 0.50 N 40 4 C8 A DG 8 ? ? N9 A DG 8 ? ? C4 A DG 8 ? ? 103.96 106.40 -2.44 0.40 N 41 5 N7 A G 1 ? ? C8 A G 1 ? ? N9 A G 1 ? ? 117.75 113.10 4.65 0.50 N 42 5 C8 A G 1 ? ? N9 A G 1 ? ? C4 A G 1 ? ? 103.95 106.40 -2.45 0.40 N 43 5 N7 A G 2 ? ? C8 A G 2 ? ? N9 A G 2 ? ? 117.82 113.10 4.72 0.50 N 44 5 C8 A G 2 ? ? N9 A G 2 ? ? C4 A G 2 ? ? 103.86 106.40 -2.54 0.40 N 45 5 N7 A A 3 ? ? C8 A A 3 ? ? N9 A A 3 ? ? 117.49 113.80 3.69 0.50 N 46 5 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 111.60 108.30 3.30 0.30 N 47 5 "O4'" A DT 6 ? ? "C1'" A DT 6 ? ? N1 A DT 6 ? ? 111.79 108.30 3.49 0.30 N 48 5 "O4'" A DC 7 ? ? "C1'" A DC 7 ? ? N1 A DC 7 ? ? 110.45 108.30 2.15 0.30 N 49 5 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 110.42 108.30 2.12 0.30 N 50 5 N7 A DG 8 ? ? C8 A DG 8 ? ? N9 A DG 8 ? ? 117.70 113.10 4.60 0.50 N 51 5 C8 A DG 8 ? ? N9 A DG 8 ? ? C4 A DG 8 ? ? 103.85 106.40 -2.55 0.40 N 52 6 N7 A G 1 ? ? C8 A G 1 ? ? N9 A G 1 ? ? 117.57 113.10 4.47 0.50 N 53 6 N7 A G 2 ? ? C8 A G 2 ? ? N9 A G 2 ? ? 118.05 113.10 4.95 0.50 N 54 6 N7 A A 3 ? ? C8 A A 3 ? ? N9 A A 3 ? ? 117.53 113.80 3.73 0.50 N 55 6 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 111.19 108.30 2.89 0.30 N 56 6 "O4'" A DT 6 ? ? "C1'" A DT 6 ? ? N1 A DT 6 ? ? 110.89 108.30 2.59 0.30 N 57 6 "O4'" A DC 7 ? ? "C1'" A DC 7 ? ? N1 A DC 7 ? ? 111.17 108.30 2.87 0.30 N 58 6 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 111.11 108.30 2.81 0.30 N 59 6 N7 A DG 8 ? ? C8 A DG 8 ? ? N9 A DG 8 ? ? 117.65 113.10 4.55 0.50 N 60 6 C8 A DG 8 ? ? N9 A DG 8 ? ? C4 A DG 8 ? ? 103.84 106.40 -2.56 0.40 N 61 7 N7 A G 1 ? ? C8 A G 1 ? ? N9 A G 1 ? ? 117.77 113.10 4.67 0.50 N 62 7 N7 A G 2 ? ? C8 A G 2 ? ? N9 A G 2 ? ? 118.02 113.10 4.92 0.50 N 63 7 C8 A G 2 ? ? N9 A G 2 ? ? C4 A G 2 ? ? 103.93 106.40 -2.47 0.40 N 64 7 N7 A A 3 ? ? C8 A A 3 ? ? N9 A A 3 ? ? 117.54 113.80 3.74 0.50 N 65 7 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 111.35 108.30 3.05 0.30 N 66 7 "O4'" A DT 6 ? ? "C1'" A DT 6 ? ? N1 A DT 6 ? ? 110.92 108.30 2.62 0.30 N 67 7 "O4'" A DC 7 ? ? "C1'" A DC 7 ? ? N1 A DC 7 ? ? 111.07 108.30 2.77 0.30 N 68 7 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 111.25 108.30 2.95 0.30 N 69 7 N7 A DG 8 ? ? C8 A DG 8 ? ? N9 A DG 8 ? ? 117.63 113.10 4.53 0.50 N 70 7 C8 A DG 8 ? ? N9 A DG 8 ? ? C4 A DG 8 ? ? 103.74 106.40 -2.66 0.40 N 71 8 N7 A G 1 ? ? C8 A G 1 ? ? N9 A G 1 ? ? 117.70 113.10 4.60 0.50 N 72 8 C8 A G 1 ? ? N9 A G 1 ? ? C4 A G 1 ? ? 103.81 106.40 -2.59 0.40 N 73 8 "O4'" A G 2 ? ? "C1'" A G 2 ? ? N9 A G 2 ? ? 113.00 108.50 4.50 0.70 N 74 8 N7 A G 2 ? ? C8 A G 2 ? ? N9 A G 2 ? ? 117.58 113.10 4.48 0.50 N 75 8 C8 A G 2 ? ? N9 A G 2 ? ? C4 A G 2 ? ? 103.91 106.40 -2.49 0.40 N 76 8 N7 A A 3 ? ? C8 A A 3 ? ? N9 A A 3 ? ? 117.58 113.80 3.78 0.50 N 77 8 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 111.69 108.30 3.39 0.30 N 78 8 "O4'" A DT 6 ? ? "C1'" A DT 6 ? ? N1 A DT 6 ? ? 110.57 108.30 2.27 0.30 N 79 8 "O4'" A DC 7 ? ? "C1'" A DC 7 ? ? N1 A DC 7 ? ? 111.11 108.30 2.81 0.30 N 80 8 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 110.83 108.30 2.53 0.30 N 81 8 N7 A DG 8 ? ? C8 A DG 8 ? ? N9 A DG 8 ? ? 117.63 113.10 4.53 0.50 N 82 8 C8 A DG 8 ? ? N9 A DG 8 ? ? C4 A DG 8 ? ? 103.80 106.40 -2.60 0.40 N 83 9 N7 A G 1 ? ? C8 A G 1 ? ? N9 A G 1 ? ? 117.60 113.10 4.50 0.50 N 84 9 N7 A G 2 ? ? C8 A G 2 ? ? N9 A G 2 ? ? 117.77 113.10 4.67 0.50 N 85 9 C8 A G 2 ? ? N9 A G 2 ? ? C4 A G 2 ? ? 103.93 106.40 -2.47 0.40 N 86 9 N7 A A 3 ? ? C8 A A 3 ? ? N9 A A 3 ? ? 117.61 113.80 3.81 0.50 N 87 9 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 111.05 108.30 2.75 0.30 N 88 9 "O4'" A DT 6 ? ? "C1'" A DT 6 ? ? N1 A DT 6 ? ? 110.77 108.30 2.47 0.30 N 89 9 "O4'" A DC 7 ? ? "C1'" A DC 7 ? ? N1 A DC 7 ? ? 111.50 108.30 3.20 0.30 N 90 9 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 110.83 108.30 2.53 0.30 N 91 9 N7 A DG 8 ? ? C8 A DG 8 ? ? N9 A DG 8 ? ? 117.83 113.10 4.73 0.50 N 92 9 C8 A DG 8 ? ? N9 A DG 8 ? ? C4 A DG 8 ? ? 103.69 106.40 -2.71 0.40 N 93 10 N7 A G 1 ? ? C8 A G 1 ? ? N9 A G 1 ? ? 117.70 113.10 4.60 0.50 N 94 10 C8 A G 1 ? ? N9 A G 1 ? ? C4 A G 1 ? ? 103.87 106.40 -2.53 0.40 N 95 10 N7 A G 2 ? ? C8 A G 2 ? ? N9 A G 2 ? ? 117.64 113.10 4.54 0.50 N 96 10 C8 A G 2 ? ? N9 A G 2 ? ? C4 A G 2 ? ? 103.88 106.40 -2.52 0.40 N 97 10 N7 A A 3 ? ? C8 A A 3 ? ? N9 A A 3 ? ? 117.56 113.80 3.76 0.50 N 98 10 "O4'" A C 4 ? ? "C1'" A C 4 ? ? N1 A C 4 ? ? 112.99 108.50 4.49 0.70 N 99 10 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 111.48 108.30 3.18 0.30 N 100 10 "O4'" A DT 6 ? ? "C1'" A DT 6 ? ? N1 A DT 6 ? ? 111.56 108.30 3.26 0.30 N 101 10 "O4'" A DC 7 ? ? "C1'" A DC 7 ? ? N1 A DC 7 ? ? 110.83 108.30 2.53 0.30 N 102 10 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 111.12 108.30 2.82 0.30 N 103 10 N7 A DG 8 ? ? C8 A DG 8 ? ? N9 A DG 8 ? ? 117.73 113.10 4.63 0.50 N 104 10 C8 A DG 8 ? ? N9 A DG 8 ? ? C4 A DG 8 ? ? 103.80 106.40 -2.60 0.40 N # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A GAO 9 A GAO 9 ? G ;GUANINE ARABINOSE-5'-PHOSPHATE ; 2 A UAR 10 A UAR 10 ? U ;URACIL ARABINOSE-5'-PHOSPHATE ; 3 A CAR 11 A CAR 11 ? DC ;CYTOSINE ARABINOSE-5'-PHOSPHATE ; 4 A CAR 12 A CAR 12 ? DC ;CYTOSINE ARABINOSE-5'-PHOSPHATE ; # _pdbx_nmr_ensemble.entry_id 1HO6 _pdbx_nmr_ensemble.conformers_calculated_total_number 10 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'all calculated structures submitted' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1HO6 _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'the hairpin stem structure closest to the average' # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system 1 '1 mM hairpin' D2O 2 '1 mM hairpin' '9:1 H2O/D2O' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 288 _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type 1 1 1 DQF-COSY 2 1 1 2D-NOESY # _pdbx_nmr_details.entry_id 1HO6 _pdbx_nmr_details.text ;This structure was determined using standard 2D homo- and heteronuclear techniques: NOESY, DQF-COSY, TOCSY, H,C-HMQC and H,P-HetCOSY ; # _pdbx_nmr_refine.entry_id 1HO6 _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ;Starting A- and B-type stem hairpin structures with randomly organized loops were refined by 14 ps restrained molecular dynamics (300-1000 K) with final enegry minimization ; _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.classification _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal X-PLOR 3.843 refinement Brunger 1 X-PLOR ? 'data analysis' Bruker 2 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 CAR P P N N 73 CAR OP1 O N N 74 CAR OP2 O N N 75 CAR OP3 O N N 76 CAR "O5'" O N N 77 CAR "C5'" C N N 78 CAR "C4'" C N R 79 CAR "O4'" O N N 80 CAR "C3'" C N S 81 CAR "O3'" O N N 82 CAR "C2'" C N S 83 CAR "O2'" O N N 84 CAR "C1'" C N R 85 CAR N1 N N N 86 CAR C2 C N N 87 CAR O2 O N N 88 CAR N3 N N N 89 CAR C4 C N N 90 CAR N4 N N N 91 CAR C5 C N N 92 CAR C6 C N N 93 CAR HOP2 H N N 94 CAR HOP3 H N N 95 CAR "H5'" H N N 96 CAR "H5''" H N N 97 CAR "H4'" H N N 98 CAR "H3'" H N N 99 CAR "HO3'" H N N 100 CAR "H2'" H N N 101 CAR "HO2'" H N N 102 CAR "H1'" H N N 103 CAR HN41 H N N 104 CAR HN42 H N N 105 CAR H5 H N N 106 CAR H6 H N N 107 DC OP3 O N N 108 DC P P N N 109 DC OP1 O N N 110 DC OP2 O N N 111 DC "O5'" O N N 112 DC "C5'" C N N 113 DC "C4'" C N R 114 DC "O4'" O N N 115 DC "C3'" C N S 116 DC "O3'" O N N 117 DC "C2'" C N N 118 DC "C1'" C N R 119 DC N1 N N N 120 DC C2 C N N 121 DC O2 O N N 122 DC N3 N N N 123 DC C4 C N N 124 DC N4 N N N 125 DC C5 C N N 126 DC C6 C N N 127 DC HOP3 H N N 128 DC HOP2 H N N 129 DC "H5'" H N N 130 DC "H5''" H N N 131 DC "H4'" H N N 132 DC "H3'" H N N 133 DC "HO3'" H N N 134 DC "H2'" H N N 135 DC "H2''" H N N 136 DC "H1'" H N N 137 DC H41 H N N 138 DC H42 H N N 139 DC H5 H N N 140 DC H6 H N N 141 DG OP3 O N N 142 DG P P N N 143 DG OP1 O N N 144 DG OP2 O N N 145 DG "O5'" O N N 146 DG "C5'" C N N 147 DG "C4'" C N R 148 DG "O4'" O N N 149 DG "C3'" C N S 150 DG "O3'" O N N 151 DG "C2'" C N N 152 DG "C1'" C N R 153 DG N9 N Y N 154 DG C8 C Y N 155 DG N7 N Y N 156 DG C5 C Y N 157 DG C6 C N N 158 DG O6 O N N 159 DG N1 N N N 160 DG C2 C N N 161 DG N2 N N N 162 DG N3 N N N 163 DG C4 C Y N 164 DG HOP3 H N N 165 DG HOP2 H N N 166 DG "H5'" H N N 167 DG "H5''" H N N 168 DG "H4'" H N N 169 DG "H3'" H N N 170 DG "HO3'" H N N 171 DG "H2'" H N N 172 DG "H2''" H N N 173 DG "H1'" H N N 174 DG H8 H N N 175 DG H1 H N N 176 DG H21 H N N 177 DG H22 H N N 178 DT OP3 O N N 179 DT P P N N 180 DT OP1 O N N 181 DT OP2 O N N 182 DT "O5'" O N N 183 DT "C5'" C N N 184 DT "C4'" C N R 185 DT "O4'" O N N 186 DT "C3'" C N S 187 DT "O3'" O N N 188 DT "C2'" C N N 189 DT "C1'" C N R 190 DT N1 N N N 191 DT C2 C N N 192 DT O2 O N N 193 DT N3 N N N 194 DT C4 C N N 195 DT O4 O N N 196 DT C5 C N N 197 DT C7 C N N 198 DT C6 C N N 199 DT HOP3 H N N 200 DT HOP2 H N N 201 DT "H5'" H N N 202 DT "H5''" H N N 203 DT "H4'" H N N 204 DT "H3'" H N N 205 DT "HO3'" H N N 206 DT "H2'" H N N 207 DT "H2''" H N N 208 DT "H1'" H N N 209 DT H3 H N N 210 DT H71 H N N 211 DT H72 H N N 212 DT H73 H N N 213 DT H6 H N N 214 G OP3 O N N 215 G P P N N 216 G OP1 O N N 217 G OP2 O N N 218 G "O5'" O N N 219 G "C5'" C N N 220 G "C4'" C N R 221 G "O4'" O N N 222 G "C3'" C N S 223 G "O3'" O N N 224 G "C2'" C N R 225 G "O2'" O N N 226 G "C1'" C N R 227 G N9 N Y N 228 G C8 C Y N 229 G N7 N Y N 230 G C5 C Y N 231 G C6 C N N 232 G O6 O N N 233 G N1 N N N 234 G C2 C N N 235 G N2 N N N 236 G N3 N N N 237 G C4 C Y N 238 G HOP3 H N N 239 G HOP2 H N N 240 G "H5'" H N N 241 G "H5''" H N N 242 G "H4'" H N N 243 G "H3'" H N N 244 G "HO3'" H N N 245 G "H2'" H N N 246 G "HO2'" H N N 247 G "H1'" H N N 248 G H8 H N N 249 G H1 H N N 250 G H21 H N N 251 G H22 H N N 252 GAO OP3 O N N 253 GAO P P N N 254 GAO OP1 O N N 255 GAO OP2 O N N 256 GAO "O5'" O N N 257 GAO "C5'" C N N 258 GAO "C4'" C N R 259 GAO "O4'" O N N 260 GAO "C3'" C N S 261 GAO "O3'" O N N 262 GAO "C2'" C N S 263 GAO "O2'" O N N 264 GAO "C1'" C N R 265 GAO N9 N Y N 266 GAO C8 C Y N 267 GAO N7 N Y N 268 GAO C5 C Y N 269 GAO C6 C N N 270 GAO O6 O N N 271 GAO N1 N N N 272 GAO C2 C N N 273 GAO N2 N N N 274 GAO N3 N N N 275 GAO C4 C Y N 276 GAO HOP3 H N N 277 GAO HOP2 H N N 278 GAO "H5'" H N N 279 GAO "H5''" H N N 280 GAO "H4'" H N N 281 GAO "H3'" H N N 282 GAO "HO3'" H N N 283 GAO "H2'" H N N 284 GAO "HO2'" H N N 285 GAO "H1'" H N N 286 GAO H8 H N N 287 GAO H1 H N N 288 GAO H21 H N N 289 GAO H22 H N N 290 UAR OP3 O N N 291 UAR P P N N 292 UAR OP1 O N N 293 UAR OP2 O N N 294 UAR "O5'" O N N 295 UAR "C5'" C N N 296 UAR "C4'" C N R 297 UAR "O4'" O N N 298 UAR "C3'" C N S 299 UAR "O3'" O N N 300 UAR "C2'" C N S 301 UAR "O2'" O N N 302 UAR "C1'" C N R 303 UAR N1 N N N 304 UAR C2 C N N 305 UAR O2 O N N 306 UAR N3 N N N 307 UAR C4 C N N 308 UAR O4 O N N 309 UAR C5 C N N 310 UAR C6 C N N 311 UAR HOP3 H N N 312 UAR HOP2 H N N 313 UAR "H5'" H N N 314 UAR "H5''" H N N 315 UAR "H4'" H N N 316 UAR "H3'" H N N 317 UAR "HO3'" H N N 318 UAR "H2'" H N N 319 UAR "HO2'" H N N 320 UAR "H1'" H N N 321 UAR H3 H N N 322 UAR H5 H N N 323 UAR H6 H N N 324 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 CAR P OP1 doub N N 76 CAR P OP2 sing N N 77 CAR P OP3 sing N N 78 CAR P "O5'" sing N N 79 CAR OP2 HOP2 sing N N 80 CAR OP3 HOP3 sing N N 81 CAR "O5'" "C5'" sing N N 82 CAR "C5'" "C4'" sing N N 83 CAR "C5'" "H5'" sing N N 84 CAR "C5'" "H5''" sing N N 85 CAR "C4'" "O4'" sing N N 86 CAR "C4'" "C3'" sing N N 87 CAR "C4'" "H4'" sing N N 88 CAR "O4'" "C1'" sing N N 89 CAR "C3'" "O3'" sing N N 90 CAR "C3'" "C2'" sing N N 91 CAR "C3'" "H3'" sing N N 92 CAR "O3'" "HO3'" sing N N 93 CAR "C2'" "O2'" sing N N 94 CAR "C2'" "C1'" sing N N 95 CAR "C2'" "H2'" sing N N 96 CAR "O2'" "HO2'" sing N N 97 CAR "C1'" N1 sing N N 98 CAR "C1'" "H1'" sing N N 99 CAR N1 C2 sing N N 100 CAR N1 C6 sing N N 101 CAR C2 O2 doub N N 102 CAR C2 N3 sing N N 103 CAR N3 C4 doub N N 104 CAR C4 N4 sing N N 105 CAR C4 C5 sing N N 106 CAR N4 HN41 sing N N 107 CAR N4 HN42 sing N N 108 CAR C5 C6 doub N N 109 CAR C5 H5 sing N N 110 CAR C6 H6 sing N N 111 DC OP3 P sing N N 112 DC OP3 HOP3 sing N N 113 DC P OP1 doub N N 114 DC P OP2 sing N N 115 DC P "O5'" sing N N 116 DC OP2 HOP2 sing N N 117 DC "O5'" "C5'" sing N N 118 DC "C5'" "C4'" sing N N 119 DC "C5'" "H5'" sing N N 120 DC "C5'" "H5''" sing N N 121 DC "C4'" "O4'" sing N N 122 DC "C4'" "C3'" sing N N 123 DC "C4'" "H4'" sing N N 124 DC "O4'" "C1'" sing N N 125 DC "C3'" "O3'" sing N N 126 DC "C3'" "C2'" sing N N 127 DC "C3'" "H3'" sing N N 128 DC "O3'" "HO3'" sing N N 129 DC "C2'" "C1'" sing N N 130 DC "C2'" "H2'" sing N N 131 DC "C2'" "H2''" sing N N 132 DC "C1'" N1 sing N N 133 DC "C1'" "H1'" sing N N 134 DC N1 C2 sing N N 135 DC N1 C6 sing N N 136 DC C2 O2 doub N N 137 DC C2 N3 sing N N 138 DC N3 C4 doub N N 139 DC C4 N4 sing N N 140 DC C4 C5 sing N N 141 DC N4 H41 sing N N 142 DC N4 H42 sing N N 143 DC C5 C6 doub N N 144 DC C5 H5 sing N N 145 DC C6 H6 sing N N 146 DG OP3 P sing N N 147 DG OP3 HOP3 sing N N 148 DG P OP1 doub N N 149 DG P OP2 sing N N 150 DG P "O5'" sing N N 151 DG OP2 HOP2 sing N N 152 DG "O5'" "C5'" sing N N 153 DG "C5'" "C4'" sing N N 154 DG "C5'" "H5'" sing N N 155 DG "C5'" "H5''" sing N N 156 DG "C4'" "O4'" sing N N 157 DG "C4'" "C3'" sing N N 158 DG "C4'" "H4'" sing N N 159 DG "O4'" "C1'" sing N N 160 DG "C3'" "O3'" sing N N 161 DG "C3'" "C2'" sing N N 162 DG "C3'" "H3'" sing N N 163 DG "O3'" "HO3'" sing N N 164 DG "C2'" "C1'" sing N N 165 DG "C2'" "H2'" sing N N 166 DG "C2'" "H2''" sing N N 167 DG "C1'" N9 sing N N 168 DG "C1'" "H1'" sing N N 169 DG N9 C8 sing Y N 170 DG N9 C4 sing Y N 171 DG C8 N7 doub Y N 172 DG C8 H8 sing N N 173 DG N7 C5 sing Y N 174 DG C5 C6 sing N N 175 DG C5 C4 doub Y N 176 DG C6 O6 doub N N 177 DG C6 N1 sing N N 178 DG N1 C2 sing N N 179 DG N1 H1 sing N N 180 DG C2 N2 sing N N 181 DG C2 N3 doub N N 182 DG N2 H21 sing N N 183 DG N2 H22 sing N N 184 DG N3 C4 sing N N 185 DT OP3 P sing N N 186 DT OP3 HOP3 sing N N 187 DT P OP1 doub N N 188 DT P OP2 sing N N 189 DT P "O5'" sing N N 190 DT OP2 HOP2 sing N N 191 DT "O5'" "C5'" sing N N 192 DT "C5'" "C4'" sing N N 193 DT "C5'" "H5'" sing N N 194 DT "C5'" "H5''" sing N N 195 DT "C4'" "O4'" sing N N 196 DT "C4'" "C3'" sing N N 197 DT "C4'" "H4'" sing N N 198 DT "O4'" "C1'" sing N N 199 DT "C3'" "O3'" sing N N 200 DT "C3'" "C2'" sing N N 201 DT "C3'" "H3'" sing N N 202 DT "O3'" "HO3'" sing N N 203 DT "C2'" "C1'" sing N N 204 DT "C2'" "H2'" sing N N 205 DT "C2'" "H2''" sing N N 206 DT "C1'" N1 sing N N 207 DT "C1'" "H1'" sing N N 208 DT N1 C2 sing N N 209 DT N1 C6 sing N N 210 DT C2 O2 doub N N 211 DT C2 N3 sing N N 212 DT N3 C4 sing N N 213 DT N3 H3 sing N N 214 DT C4 O4 doub N N 215 DT C4 C5 sing N N 216 DT C5 C7 sing N N 217 DT C5 C6 doub N N 218 DT C7 H71 sing N N 219 DT C7 H72 sing N N 220 DT C7 H73 sing N N 221 DT C6 H6 sing N N 222 G OP3 P sing N N 223 G OP3 HOP3 sing N N 224 G P OP1 doub N N 225 G P OP2 sing N N 226 G P "O5'" sing N N 227 G OP2 HOP2 sing N N 228 G "O5'" "C5'" sing N N 229 G "C5'" "C4'" sing N N 230 G "C5'" "H5'" sing N N 231 G "C5'" "H5''" sing N N 232 G "C4'" "O4'" sing N N 233 G "C4'" "C3'" sing N N 234 G "C4'" "H4'" sing N N 235 G "O4'" "C1'" sing N N 236 G "C3'" "O3'" sing N N 237 G "C3'" "C2'" sing N N 238 G "C3'" "H3'" sing N N 239 G "O3'" "HO3'" sing N N 240 G "C2'" "O2'" sing N N 241 G "C2'" "C1'" sing N N 242 G "C2'" "H2'" sing N N 243 G "O2'" "HO2'" sing N N 244 G "C1'" N9 sing N N 245 G "C1'" "H1'" sing N N 246 G N9 C8 sing Y N 247 G N9 C4 sing Y N 248 G C8 N7 doub Y N 249 G C8 H8 sing N N 250 G N7 C5 sing Y N 251 G C5 C6 sing N N 252 G C5 C4 doub Y N 253 G C6 O6 doub N N 254 G C6 N1 sing N N 255 G N1 C2 sing N N 256 G N1 H1 sing N N 257 G C2 N2 sing N N 258 G C2 N3 doub N N 259 G N2 H21 sing N N 260 G N2 H22 sing N N 261 G N3 C4 sing N N 262 GAO OP3 P sing N N 263 GAO OP3 HOP3 sing N N 264 GAO P OP1 doub N N 265 GAO P OP2 sing N N 266 GAO P "O5'" sing N N 267 GAO OP2 HOP2 sing N N 268 GAO "O5'" "C5'" sing N N 269 GAO "C5'" "C4'" sing N N 270 GAO "C5'" "H5'" sing N N 271 GAO "C5'" "H5''" sing N N 272 GAO "C4'" "O4'" sing N N 273 GAO "C4'" "C3'" sing N N 274 GAO "C4'" "H4'" sing N N 275 GAO "O4'" "C1'" sing N N 276 GAO "C3'" "O3'" sing N N 277 GAO "C3'" "C2'" sing N N 278 GAO "C3'" "H3'" sing N N 279 GAO "O3'" "HO3'" sing N N 280 GAO "C2'" "O2'" sing N N 281 GAO "C2'" "C1'" sing N N 282 GAO "C2'" "H2'" sing N N 283 GAO "O2'" "HO2'" sing N N 284 GAO "C1'" N9 sing N N 285 GAO "C1'" "H1'" sing N N 286 GAO N9 C8 sing Y N 287 GAO N9 C4 sing Y N 288 GAO C8 N7 doub Y N 289 GAO C8 H8 sing N N 290 GAO N7 C5 sing Y N 291 GAO C5 C6 sing N N 292 GAO C5 C4 doub Y N 293 GAO C6 O6 doub N N 294 GAO C6 N1 sing N N 295 GAO N1 C2 sing N N 296 GAO N1 H1 sing N N 297 GAO C2 N2 sing N N 298 GAO C2 N3 doub N N 299 GAO N2 H21 sing N N 300 GAO N2 H22 sing N N 301 GAO N3 C4 sing N N 302 UAR OP3 P sing N N 303 UAR OP3 HOP3 sing N N 304 UAR P OP1 doub N N 305 UAR P OP2 sing N N 306 UAR P "O5'" sing N N 307 UAR OP2 HOP2 sing N N 308 UAR "O5'" "C5'" sing N N 309 UAR "C5'" "C4'" sing N N 310 UAR "C5'" "H5'" sing N N 311 UAR "C5'" "H5''" sing N N 312 UAR "C4'" "O4'" sing N N 313 UAR "C4'" "C3'" sing N N 314 UAR "C4'" "H4'" sing N N 315 UAR "O4'" "C1'" sing N N 316 UAR "C3'" "O3'" sing N N 317 UAR "C3'" "C2'" sing N N 318 UAR "C3'" "H3'" sing N N 319 UAR "O3'" "HO3'" sing N N 320 UAR "C2'" "O2'" sing N N 321 UAR "C2'" "C1'" sing N N 322 UAR "C2'" "H2'" sing N N 323 UAR "O2'" "HO2'" sing N N 324 UAR "C1'" N1 sing N N 325 UAR "C1'" "H1'" sing N N 326 UAR N1 C2 sing N N 327 UAR N1 C6 sing N N 328 UAR C2 O2 doub N N 329 UAR C2 N3 sing N N 330 UAR N3 C4 sing N N 331 UAR N3 H3 sing N N 332 UAR C4 O4 doub N N 333 UAR C4 C5 sing N N 334 UAR C5 C6 doub N N 335 UAR C5 H5 sing N N 336 UAR C6 H6 sing N N 337 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1HO6 'double helix' 1HO6 'a-form double helix' 1HO6 'triple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A CAR 12 1_555 -0.371 -0.305 -0.113 -7.333 0.809 0.817 1 A_G1:CAR12_A A 1 ? A 12 ? 19 1 1 A G 2 1_555 A CAR 11 1_555 -0.426 -0.399 -0.097 -4.260 -9.783 -1.145 2 A_G2:CAR11_A A 2 ? A 11 ? 19 1 1 A A 3 1_555 A UAR 10 1_555 -0.051 -0.323 0.073 2.492 -11.467 -0.919 3 A_A3:UAR10_A A 3 ? A 10 ? 20 1 1 A C 4 1_555 A GAO 9 1_555 1.175 -0.393 -0.642 15.512 -16.413 9.085 4 A_C4:GAO9_A A 4 ? A 9 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A CAR 12 1_555 A G 2 1_555 A CAR 11 1_555 -0.481 -1.624 3.054 3.702 1.097 31.481 -3.157 1.505 2.923 2.013 -6.792 31.711 1 AA_G1G2:CAR11CAR12_AA A 1 ? A 12 ? A 2 ? A 11 ? 1 A G 2 1_555 A CAR 11 1_555 A A 3 1_555 A UAR 10 1_555 -0.254 -0.959 2.935 2.098 1.937 34.652 -1.868 0.709 2.859 3.245 -3.516 34.766 2 AA_G2A3:UAR10CAR11_AA A 2 ? A 11 ? A 3 ? A 10 ? 1 A A 3 1_555 A UAR 10 1_555 A C 4 1_555 A GAO 9 1_555 0.438 -0.399 2.642 8.103 3.578 35.878 -1.025 0.204 2.625 5.702 -12.912 36.921 3 AA_A3C4:GAO9UAR10_AA A 3 ? A 10 ? A 4 ? A 9 ? # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.model DRX _pdbx_nmr_spectrometer.field_strength 500 # _atom_sites.entry_id 1HO6 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_