HEADER HYDROLASE 10-DEC-00 1HO8 TITLE CRYSTAL STRUCTURE OF THE REGULATORY SUBUNIT H OF THE V-TYPE ATPASE OF TITLE 2 SACCHAROMYCES CEREVISIAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: VACUOLAR ATP SYNTHASE SUBUNIT H; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: VMA13, V-ATPASE H SUBUNIT, VACUOLAR PROTON PUMP H SUBUNIT, COMPND 5 V-ATPASE 54 KDA SUBUNIT; COMPND 6 EC: 3.6.1.34; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX4T3 KEYWDS HEAT REPEAT, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.SAGERMANN,T.H.STEVENS,B.W.MATTHEWS REVDAT 7 03-APR-24 1HO8 1 REMARK REVDAT 6 07-FEB-24 1HO8 1 REMARK REVDAT 5 22-JUL-20 1HO8 1 REMARK SEQADV REVDAT 4 04-OCT-17 1HO8 1 REMARK REVDAT 3 24-FEB-09 1HO8 1 VERSN REVDAT 2 01-APR-03 1HO8 1 JRNL REVDAT 1 20-JUN-01 1HO8 0 JRNL AUTH M.SAGERMANN,T.H.STEVENS,B.W.MATTHEWS JRNL TITL CRYSTAL STRUCTURE OF THE REGULATORY SUBUNIT H OF THE V-TYPE JRNL TITL 2 ATPASE OF SACCHAROMYCES CEREVISIAE. JRNL REF PROC.NATL.ACAD.SCI.USA V. 98 7134 2001 JRNL REFN ISSN 0027-8424 JRNL PMID 11416198 JRNL DOI 10.1073/PNAS.131192798 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.SAGERMANN,B.W.MATTHEWS REMARK 1 TITL CLONING, EXPRESSION AND CRYSTALLIZATION OF VMA13P, AN REMARK 1 TITL 2 ESSENTIAL SUBUNIT OF THE VACUOLAR H+-ATPASE OF SACCHAROMYCES REMARK 1 TITL 3 CEREVISIAE. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 56 475 2000 REMARK 1 REFN ISSN 0907-4449 REMARK 1 DOI 10.1107/S0907444900000950 REMARK 1 REFERENCE 2 REMARK 1 AUTH M.N.HO,R.HIRATA,N.UMEMOTO,Y.OHYA,A.TAKATSUKI,T.H.STEVENS, REMARK 1 AUTH 2 Y.ANRAKU REMARK 1 TITL VMA13 ENCODES A 54-KDA VACUOLAR H(+)-ATPASE SUBUNIT REQUIRED REMARK 1 TITL 2 FOR ACTIVITY BUT NOT ASSEMBLY OF THE ENZYME COMPLEX IN REMARK 1 TITL 3 SACCHAROMYCES CEREVISIAE. REMARK 1 REF J.BIOL.CHEM. V. 268 18286 1993 REMARK 1 REFN ISSN 0021-9258 REMARK 2 REMARK 2 RESOLUTION. 2.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 71.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 20090 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.312 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1624 REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.2230 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.2210 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.312 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : 8.00 REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 1624 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 20130 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3608 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 25 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : 65.000 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.015 ; NULL ; NULL REMARK 3 BOND ANGLES (DEGREES) : 1.900 ; NULL ; NULL REMARK 3 TORSION ANGLES (DEGREES) : 22.390; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES (A) : NULL ; NULL ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS (A) : NULL ; NULL ; NULL REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : ENGH & HUBER REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : ANISOTROPIC REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 REFINEMENT AS IMPLEMENTED IN TNT. RESIDUES 54-70 AND 224- REMARK 3 236 WERE NOT MODELED DUE TO DISORDER. RESIDUES 408-415 REMARK 3 AND 455-459 WERE PARTIALLY VISIBLE IN THE ELECTRON REMARK 3 DENSITY AND REFINED TO HIGH B VALUES REMARK 4 REMARK 4 1HO8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-DEC-00. REMARK 100 THE DEPOSITION ID IS D_1000012481. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-NOV-00 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL SI 111 CRYSTALS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20090 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.950 REMARK 200 RESOLUTION RANGE LOW (A) : 71.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.45400 REMARK 200 R SYM FOR SHELL (I) : 45.4000 REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIR AND MAD REMARK 200 SOFTWARE USED: MLPHARE, SHARP REMARK 200 STARTING MODEL: VMA13 POLY ALANINE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, DITHIOTHREITOL, PH REMARK 280 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 79.91533 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 39.95767 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 39.95767 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 79.91533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 LYS A 54 REMARK 465 ASN A 55 REMARK 465 ILE A 56 REMARK 465 GLY A 57 REMARK 465 ASP A 58 REMARK 465 GLY A 59 REMARK 465 LEU A 60 REMARK 465 SER A 61 REMARK 465 SER A 62 REMARK 465 SER A 63 REMARK 465 ASN A 64 REMARK 465 ASN A 65 REMARK 465 ALA A 66 REMARK 465 HIS A 67 REMARK 465 SER A 68 REMARK 465 GLY A 69 REMARK 465 PHE A 70 REMARK 465 SER A 224 REMARK 465 GLN A 225 REMARK 465 LEU A 226 REMARK 465 ALA A 227 REMARK 465 THR A 228 REMARK 465 ARG A 229 REMARK 465 ILE A 230 REMARK 465 VAL A 231 REMARK 465 ALA A 232 REMARK 465 THR A 233 REMARK 465 ASN A 234 REMARK 465 SER A 235 REMARK 465 ASN A 236 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 15 CD GLU A 15 OE2 0.070 REMARK 500 GLU A 35 CD GLU A 35 OE2 0.083 REMARK 500 GLU A 38 CD GLU A 38 OE2 0.104 REMARK 500 VAL A 72 C VAL A 72 O -0.115 REMARK 500 VAL A 72 C ASN A 73 N -0.154 REMARK 500 ASN A 73 C GLY A 74 N -0.183 REMARK 500 GLU A 90 CD GLU A 90 OE2 0.067 REMARK 500 GLU A 102 CD GLU A 102 OE2 0.070 REMARK 500 GLU A 178 CD GLU A 178 OE2 0.066 REMARK 500 GLU A 192 CD GLU A 192 OE2 0.069 REMARK 500 GLU A 207 CD GLU A 207 OE2 0.072 REMARK 500 GLU A 262 CD GLU A 262 OE2 0.066 REMARK 500 GLU A 327 CD GLU A 327 OE2 0.082 REMARK 500 GLU A 333 CD GLU A 333 OE2 0.068 REMARK 500 GLU A 344 CD GLU A 344 OE2 0.068 REMARK 500 GLU A 358 CD GLU A 358 OE2 0.088 REMARK 500 GLU A 400 CD GLU A 400 OE2 0.067 REMARK 500 GLU A 436 CD GLU A 436 OE2 0.068 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 HIS A 12 CA - CB - CG ANGL. DEV. = -13.2 DEGREES REMARK 500 ARG A 17 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 17 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ASP A 88 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 ASP A 120 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP A 120 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ASP A 135 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP A 135 CB - CG - OD2 ANGL. DEV. = -6.4 DEGREES REMARK 500 ASP A 181 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ASP A 201 CB - CG - OD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 ASP A 223 CB - CG - OD2 ANGL. DEV. = -5.6 DEGREES REMARK 500 PRO A 257 C - N - CD ANGL. DEV. = -20.0 DEGREES REMARK 500 ASP A 270 CB - CG - OD2 ANGL. DEV. = -6.3 DEGREES REMARK 500 ASP A 273 CB - CG - OD2 ANGL. DEV. = -6.4 DEGREES REMARK 500 ASP A 332 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 332 CB - CG - OD2 ANGL. DEV. = -6.4 DEGREES REMARK 500 PRO A 372 C - N - CD ANGL. DEV. = -21.5 DEGREES REMARK 500 ASP A 385 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ASP A 439 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 ASP A 449 CB - CG - OD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 3 35.93 -146.93 REMARK 500 THR A 4 99.71 82.72 REMARK 500 ALA A 26 79.80 -103.14 REMARK 500 TRP A 27 -85.77 -45.48 REMARK 500 ASP A 28 -71.68 -4.15 REMARK 500 SER A 33 6.60 -69.44 REMARK 500 ILE A 39 -64.54 -16.83 REMARK 500 ASP A 40 -73.42 -57.98 REMARK 500 VAL A 72 -76.50 -47.68 REMARK 500 ASN A 73 105.86 152.06 REMARK 500 LYS A 75 40.19 -93.76 REMARK 500 LEU A 77 -71.82 -66.26 REMARK 500 ILE A 78 -55.65 -12.24 REMARK 500 LEU A 80 -73.84 -42.28 REMARK 500 HIS A 82 -81.14 -41.44 REMARK 500 SER A 87 151.19 176.60 REMARK 500 VAL A 96 -76.37 -69.32 REMARK 500 GLN A 97 -50.64 -22.48 REMARK 500 ASN A 98 -70.73 -59.67 REMARK 500 LEU A 103 -71.29 -71.48 REMARK 500 LEU A 104 -49.57 -23.29 REMARK 500 TYR A 109 -139.08 -87.64 REMARK 500 PHE A 116 -62.07 -24.70 REMARK 500 ASP A 120 63.49 -119.45 REMARK 500 PRO A 121 -4.31 -50.54 REMARK 500 LEU A 132 42.76 77.29 REMARK 500 ASP A 135 141.39 -33.99 REMARK 500 PHE A 144 -61.47 -25.75 REMARK 500 ASN A 145 -74.25 -53.17 REMARK 500 LEU A 150 -47.23 -26.54 REMARK 500 ASN A 153 -54.87 -0.97 REMARK 500 HIS A 156 128.68 -31.03 REMARK 500 ASN A 157 73.42 -161.31 REMARK 500 LYS A 163 -70.51 -66.80 REMARK 500 ASN A 168 -83.29 -81.04 REMARK 500 ASN A 169 -57.87 -9.92 REMARK 500 THR A 182 -77.59 -66.07 REMARK 500 CYS A 183 -58.62 -24.61 REMARK 500 TYR A 184 -73.45 -41.23 REMARK 500 VAL A 185 -78.38 -34.08 REMARK 500 CYS A 186 -68.76 -21.12 REMARK 500 LEU A 189 -78.12 -44.32 REMARK 500 LEU A 190 -67.22 -27.78 REMARK 500 PRO A 197 -56.62 -26.53 REMARK 500 LYS A 208 -7.08 -50.46 REMARK 500 ARG A 220 -45.95 -28.06 REMARK 500 THR A 222 -19.07 -39.62 REMARK 500 GLN A 241 -40.56 -131.38 REMARK 500 TYR A 244 -70.53 -54.24 REMARK 500 ILE A 250 -75.60 -54.14 REMARK 500 REMARK 500 THIS ENTRY HAS 102 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 VAL A 72 18.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 500 DBREF 1HO8 A 1 478 UNP P41807 VATH_YEAST 1 478 SEQADV 1HO8 GLY A -1 UNP P41807 CLONING ARTIFACT SEQADV 1HO8 SER A 0 UNP P41807 CLONING ARTIFACT SEQRES 1 A 480 GLY SER MET GLY ALA THR LYS ILE LEU MET ASP SER THR SEQRES 2 A 480 HIS PHE ASN GLU ILE ARG SER ILE ILE ARG SER ARG SER SEQRES 3 A 480 VAL ALA TRP ASP ALA LEU ALA ARG SER GLU GLU LEU SER SEQRES 4 A 480 GLU ILE ASP ALA SER THR ALA LYS ALA LEU GLU SER ILE SEQRES 5 A 480 LEU VAL LYS LYS ASN ILE GLY ASP GLY LEU SER SER SER SEQRES 6 A 480 ASN ASN ALA HIS SER GLY PHE LYS VAL ASN GLY LYS THR SEQRES 7 A 480 LEU ILE PRO LEU ILE HIS LEU LEU SER THR SER ASP ASN SEQRES 8 A 480 GLU ASP CYS LYS LYS SER VAL GLN ASN LEU ILE ALA GLU SEQRES 9 A 480 LEU LEU SER SER ASP LYS TYR GLY ASP ASP THR VAL LYS SEQRES 10 A 480 PHE PHE GLN GLU ASP PRO LYS GLN LEU GLU GLN LEU PHE SEQRES 11 A 480 ASP VAL SER LEU LYS GLY ASP PHE GLN THR VAL LEU ILE SEQRES 12 A 480 SER GLY PHE ASN VAL VAL SER LEU LEU VAL GLN ASN GLY SEQRES 13 A 480 LEU HIS ASN VAL LYS LEU VAL GLU LYS LEU LEU LYS ASN SEQRES 14 A 480 ASN ASN LEU ILE ASN ILE LEU GLN ASN ILE GLU GLN MET SEQRES 15 A 480 ASP THR CYS TYR VAL CYS ILE ARG LEU LEU GLN GLU LEU SEQRES 16 A 480 ALA VAL ILE PRO GLU TYR ARG ASP VAL ILE TRP LEU HIS SEQRES 17 A 480 GLU LYS LYS PHE MET PRO THR LEU PHE LYS ILE LEU GLN SEQRES 18 A 480 ARG ALA THR ASP SER GLN LEU ALA THR ARG ILE VAL ALA SEQRES 19 A 480 THR ASN SER ASN HIS LEU GLY ILE GLN LEU GLN TYR HIS SEQRES 20 A 480 SER LEU LEU LEU ILE TRP LEU LEU THR PHE ASN PRO VAL SEQRES 21 A 480 PHE ALA ASN GLU LEU VAL GLN LYS TYR LEU SER ASP PHE SEQRES 22 A 480 LEU ASP LEU LEU LYS LEU VAL LYS ILE THR ILE LYS GLU SEQRES 23 A 480 LYS VAL SER ARG LEU CYS ILE SER ILE ILE LEU GLN CYS SEQRES 24 A 480 CYS SER THR ARG VAL LYS GLN HIS LYS LYS VAL ILE LYS SEQRES 25 A 480 GLN LEU LEU LEU LEU GLY ASN ALA LEU PRO THR VAL GLN SEQRES 26 A 480 SER LEU SER GLU ARG LYS TYR SER ASP GLU GLU LEU ARG SEQRES 27 A 480 GLN ASP ILE SER ASN LEU LYS GLU ILE LEU GLU ASN GLU SEQRES 28 A 480 TYR GLN GLU LEU THR SER PHE ASP GLU TYR VAL ALA GLU SEQRES 29 A 480 LEU ASP SER LYS LEU LEU CYS TRP SER PRO PRO HIS VAL SEQRES 30 A 480 ASP ASN GLY PHE TRP SER ASP ASN ILE ASP GLU PHE LYS SEQRES 31 A 480 LYS ASP ASN TYR LYS ILE PHE ARG GLN LEU ILE GLU LEU SEQRES 32 A 480 LEU GLN ALA LYS VAL ARG ASN GLY ASP VAL ASN ALA LYS SEQRES 33 A 480 GLN GLU LYS ILE ILE ILE GLN VAL ALA LEU ASN ASP ILE SEQRES 34 A 480 THR HIS VAL VAL GLU LEU LEU PRO GLU SER ILE ASP VAL SEQRES 35 A 480 LEU ASP LYS THR GLY GLY LYS ALA ASP ILE MET GLU LEU SEQRES 36 A 480 LEU ASN HIS SER ASP SER ARG VAL LYS TYR GLU ALA LEU SEQRES 37 A 480 LYS ALA THR GLN ALA ILE ILE GLY TYR THR PHE LYS HET SO4 A 500 5 HETNAM SO4 SULFATE ION FORMUL 2 SO4 O4 S 2- FORMUL 3 HOH *25(H2 O) HELIX 1 1 SER A 10 ARG A 23 1 14 HELIX 2 2 ALA A 26 SER A 33 1 8 HELIX 3 3 SER A 37 LYS A 53 1 17 HELIX 4 4 THR A 76 THR A 86 1 11 HELIX 5 5 ASN A 89 SER A 106 1 18 HELIX 6 6 GLY A 110 ASP A 120 1 11 HELIX 7 7 LYS A 122 SER A 131 1 10 HELIX 8 8 ASP A 135 VAL A 151 1 17 HELIX 9 9 ASN A 157 ASN A 167 1 11 HELIX 10 10 ASN A 167 ASN A 176 1 10 HELIX 11 11 GLN A 179 VAL A 195 1 17 HELIX 12 12 ILE A 196 LEU A 205 1 10 HELIX 13 13 HIS A 206 ASP A 223 1 18 HELIX 14 14 LEU A 238 THR A 254 1 17 HELIX 15 15 ASN A 256 GLN A 265 1 10 HELIX 16 16 TYR A 267 THR A 281 1 15 HELIX 17 17 LYS A 283 CYS A 297 1 15 HELIX 18 18 GLN A 304 ASN A 317 1 14 HELIX 19 19 ASN A 317 GLU A 327 1 11 HELIX 20 20 ASP A 332 GLU A 352 1 21 HELIX 21 21 THR A 354 LYS A 366 1 13 HELIX 22 22 SER A 371 VAL A 375 5 5 HELIX 23 23 ASP A 376 ILE A 384 1 9 HELIX 24 24 ASP A 385 LYS A 388 5 4 HELIX 25 25 LYS A 389 ASN A 391 5 3 HELIX 26 26 TYR A 392 ASN A 408 1 17 HELIX 27 27 ALA A 413 LEU A 434 1 22 HELIX 28 28 SER A 437 GLY A 445 1 9 HELIX 29 29 GLY A 445 LEU A 454 1 10 HELIX 30 30 ASP A 458 THR A 476 1 19 CISPEP 1 ILE A 282 LYS A 283 0 18.21 SITE 1 AC1 7 ASP A 9 SER A 10 THR A 11 HIS A 12 SITE 2 AC1 7 TYR A 184 ARG A 188 GLN A 241 CRYST1 117.342 117.342 119.873 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008522 0.004920 0.000000 0.00000 SCALE2 0.000000 0.009840 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008342 0.00000