HEADER HYDROLASE 16-DEC-00 1HQF TITLE CRYSTAL STRUCTURE OF THE BINUCLEAR MANGANESE METALLOENZYME ARGINASE TITLE 2 COMPLEXED WITH N-HYDROXY-L-ARGININE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARGINASE 1; COMPND 3 CHAIN: A, B, C; COMPND 4 EC: 3.5.3.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ARGINASE, N-HYDROXY-L-ARGININE (NOHA), BINUCLEAR MANGANESE CLUSTER, KEYWDS 2 METALLOENZYME, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.D.COX,E.CAMA,D.M.COLLELUORI,D.E.ASH,D.W.CHRISTIANSON REVDAT 4 07-FEB-24 1HQF 1 REMARK LINK REVDAT 3 24-FEB-09 1HQF 1 VERSN REVDAT 2 01-APR-03 1HQF 1 JRNL REVDAT 1 04-APR-01 1HQF 0 JRNL AUTH J.D.COX,E.CAMA,D.M.COLLELUORI,S.PETHE,J.L.BOUCHER,D.MANSUY, JRNL AUTH 2 D.E.ASH,D.W.CHRISTIANSON JRNL TITL MECHANISTIC AND METABOLIC INFERENCES FROM THE BINDING OF JRNL TITL 2 SUBSTRATE ANALOGUES AND PRODUCTS TO ARGINASE. JRNL REF BIOCHEMISTRY V. 40 2689 2001 JRNL REFN ISSN 0006-2960 JRNL PMID 11258880 JRNL DOI 10.1021/BI002318+ REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 17125 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.265 REMARK 3 FREE R VALUE : 0.289 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 781 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7185 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 45 REMARK 3 SOLVENT ATOMS : 15 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.500 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1HQF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-DEC-00. REMARK 100 THE DEPOSITION ID IS D_1000012517. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUN-00 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL7-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.08 REMARK 200 MONOCHROMATOR : FILTER REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17424 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 83.7 REMARK 200 DATA REDUNDANCY : 1.800 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.7 REMARK 200 DATA REDUNDANCY IN SHELL : 1.80 REMARK 200 R MERGE FOR SHELL (I) : 0.30200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, BICINE, MANGANESE CHLORIDE, REMARK 280 PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.66667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 37.33333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A TRIMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 SER A 3 REMARK 465 LYS A 4 REMARK 465 PRO A 5 REMARK 465 LYS A 320 REMARK 465 PRO A 321 REMARK 465 PRO A 322 REMARK 465 LYS A 323 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 SER B 3 REMARK 465 LYS B 4 REMARK 465 PRO B 5 REMARK 465 LYS B 320 REMARK 465 PRO B 321 REMARK 465 PRO B 322 REMARK 465 LYS B 323 REMARK 465 MET C 1 REMARK 465 SER C 2 REMARK 465 SER C 3 REMARK 465 LYS C 4 REMARK 465 PRO C 5 REMARK 465 LYS C 320 REMARK 465 PRO C 321 REMARK 465 PRO C 322 REMARK 465 LYS C 323 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 99 N - CA - C ANGL. DEV. = -16.9 DEGREES REMARK 500 GLY B 99 N - CA - C ANGL. DEV. = -16.9 DEGREES REMARK 500 GLY C 99 N - CA - C ANGL. DEV. = -16.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 14 85.88 -48.72 REMARK 500 SER A 16 -5.78 -165.06 REMARK 500 LEU A 53 103.77 -51.24 REMARK 500 ASN A 60 75.10 50.01 REMARK 500 PRO A 63 81.46 -69.84 REMARK 500 PHE A 64 83.60 -41.96 REMARK 500 GLN A 65 -85.83 73.46 REMARK 500 ASN A 69 45.42 29.26 REMARK 500 GLN A 88 -35.97 -39.68 REMARK 500 HIS A 101 7.39 -69.68 REMARK 500 THR A 135 134.44 -30.16 REMARK 500 SER A 136 30.35 -99.07 REMARK 500 SER A 137 147.43 -171.80 REMARK 500 LEU A 140 -7.95 -56.98 REMARK 500 GLN A 143 -17.02 -140.95 REMARK 500 PRO A 144 -39.73 -27.56 REMARK 500 GLU A 151 0.66 -58.92 REMARK 500 ASP A 158 133.47 -39.00 REMARK 500 PRO A 160 90.93 -57.05 REMARK 500 PRO A 167 108.91 -46.32 REMARK 500 ARG A 180 -2.77 -154.05 REMARK 500 PRO A 184 -73.06 -43.78 REMARK 500 GLU A 214 -75.17 -61.77 REMARK 500 THR A 215 -37.19 -28.53 REMARK 500 ARG A 222 -84.88 -85.02 REMARK 500 VAL A 233 -25.58 -28.46 REMARK 500 LYS A 266 2.48 -56.69 REMARK 500 ASN A 279 79.63 -113.91 REMARK 500 PRO A 280 0.83 -43.08 REMARK 500 VAL A 289 -70.82 -63.14 REMARK 500 LEU A 301 -12.50 -49.38 REMARK 500 THR A 306 126.95 -33.68 REMARK 500 PRO B 14 85.85 -48.65 REMARK 500 SER B 16 -5.73 -165.10 REMARK 500 LEU B 53 103.76 -51.23 REMARK 500 ASN B 60 75.07 50.02 REMARK 500 PRO B 63 81.46 -69.86 REMARK 500 PHE B 64 83.61 -41.96 REMARK 500 GLN B 65 -85.84 73.46 REMARK 500 ASN B 69 45.41 29.29 REMARK 500 GLN B 88 -35.81 -39.74 REMARK 500 HIS B 101 7.29 -69.59 REMARK 500 THR B 135 134.44 -30.13 REMARK 500 SER B 136 30.33 -99.04 REMARK 500 SER B 137 147.42 -171.82 REMARK 500 LEU B 140 -7.94 -56.99 REMARK 500 GLN B 143 -17.05 -140.95 REMARK 500 PRO B 144 -39.71 -27.55 REMARK 500 GLU B 151 0.66 -58.93 REMARK 500 ASP B 158 133.44 -38.97 REMARK 500 REMARK 500 THIS ENTRY HAS 96 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 176 0.07 SIDE CHAIN REMARK 500 TYR B 176 0.07 SIDE CHAIN REMARK 500 TYR C 176 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 500 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 101 ND1 REMARK 620 2 ASP A 124 OD2 78.9 REMARK 620 3 ASP A 128 OD2 118.5 77.2 REMARK 620 4 HAR A 906 OH1 114.6 87.5 119.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 501 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 124 OD1 REMARK 620 2 HIS A 126 ND1 87.5 REMARK 620 3 ASP A 232 OD2 74.9 157.2 REMARK 620 4 ASP A 234 OD1 91.6 119.8 75.8 REMARK 620 5 ASP A 234 OD2 130.8 140.0 61.4 57.9 REMARK 620 6 HAR A 906 OH1 106.8 115.6 58.3 122.1 69.3 REMARK 620 7 HAR A 906 NH1 108.5 81.3 90.6 152.0 94.1 34.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 502 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 101 ND1 REMARK 620 2 ASP B 124 OD2 78.9 REMARK 620 3 ASP B 128 OD2 118.5 77.2 REMARK 620 4 HAR B 907 OH1 114.6 87.5 119.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 503 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 124 OD1 REMARK 620 2 HIS B 126 ND1 87.5 REMARK 620 3 ASP B 232 OD2 74.9 157.2 REMARK 620 4 ASP B 234 OD1 89.1 119.0 75.7 REMARK 620 5 ASP B 234 OD2 126.3 143.6 58.4 56.8 REMARK 620 6 HAR B 907 OH1 106.8 115.5 58.3 123.6 71.2 REMARK 620 7 HAR B 907 NH1 108.4 81.3 90.6 154.3 97.5 34.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN C 504 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 101 ND1 REMARK 620 2 ASP C 124 OD2 78.9 REMARK 620 3 ASP C 128 OD2 118.5 77.2 REMARK 620 4 HAR C 908 OH1 114.6 87.5 119.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN C 505 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 124 OD1 REMARK 620 2 HIS C 126 ND1 87.5 REMARK 620 3 ASP C 232 OD2 74.8 157.2 REMARK 620 4 ASP C 234 OD1 89.0 119.2 75.5 REMARK 620 5 ASP C 234 OD2 126.5 143.3 58.6 56.8 REMARK 620 6 HAR C 908 OH1 106.8 115.6 58.3 123.4 71.2 REMARK 620 7 HAR C 908 NH1 108.5 81.3 90.6 154.2 97.5 34.3 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN C 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN C 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HAR A 906 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HAR B 907 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HAR C 908 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1RLA RELATED DB: PDB REMARK 900 NATIVE ARGINASE DBREF 1HQF A 1 323 UNP P07824 ARGI1_RAT 1 323 DBREF 1HQF B 1 323 UNP P07824 ARGI1_RAT 1 323 DBREF 1HQF C 1 323 UNP P07824 ARGI1_RAT 1 323 SEQRES 1 A 323 MET SER SER LYS PRO LYS PRO ILE GLU ILE ILE GLY ALA SEQRES 2 A 323 PRO PHE SER LYS GLY GLN PRO ARG GLY GLY VAL GLU LYS SEQRES 3 A 323 GLY PRO ALA ALA LEU ARG LYS ALA GLY LEU VAL GLU LYS SEQRES 4 A 323 LEU LYS GLU THR GLU TYR ASN VAL ARG ASP HIS GLY ASP SEQRES 5 A 323 LEU ALA PHE VAL ASP VAL PRO ASN ASP SER PRO PHE GLN SEQRES 6 A 323 ILE VAL LYS ASN PRO ARG SER VAL GLY LYS ALA ASN GLU SEQRES 7 A 323 GLN LEU ALA ALA VAL VAL ALA GLU THR GLN LYS ASN GLY SEQRES 8 A 323 THR ILE SER VAL VAL LEU GLY GLY ASP HIS SER MET ALA SEQRES 9 A 323 ILE GLY SER ILE SER GLY HIS ALA ARG VAL HIS PRO ASP SEQRES 10 A 323 LEU CYS VAL ILE TRP VAL ASP ALA HIS THR ASP ILE ASN SEQRES 11 A 323 THR PRO LEU THR THR SER SER GLY ASN LEU HIS GLY GLN SEQRES 12 A 323 PRO VAL ALA PHE LEU LEU LYS GLU LEU LYS GLY LYS PHE SEQRES 13 A 323 PRO ASP VAL PRO GLY PHE SER TRP VAL THR PRO CYS ILE SEQRES 14 A 323 SER ALA LYS ASP ILE VAL TYR ILE GLY LEU ARG ASP VAL SEQRES 15 A 323 ASP PRO GLY GLU HIS TYR ILE ILE LYS THR LEU GLY ILE SEQRES 16 A 323 LYS TYR PHE SER MET THR GLU VAL ASP LYS LEU GLY ILE SEQRES 17 A 323 GLY LYS VAL MET GLU GLU THR PHE SER TYR LEU LEU GLY SEQRES 18 A 323 ARG LYS LYS ARG PRO ILE HIS LEU SER PHE ASP VAL ASP SEQRES 19 A 323 GLY LEU ASP PRO VAL PHE THR PRO ALA THR GLY THR PRO SEQRES 20 A 323 VAL VAL GLY GLY LEU SER TYR ARG GLU GLY LEU TYR ILE SEQRES 21 A 323 THR GLU GLU ILE TYR LYS THR GLY LEU LEU SER GLY LEU SEQRES 22 A 323 ASP ILE MET GLU VAL ASN PRO THR LEU GLY LYS THR PRO SEQRES 23 A 323 GLU GLU VAL THR ARG THR VAL ASN THR ALA VAL ALA LEU SEQRES 24 A 323 THR LEU SER CYS PHE GLY THR LYS ARG GLU GLY ASN HIS SEQRES 25 A 323 LYS PRO GLU THR ASP TYR LEU LYS PRO PRO LYS SEQRES 1 B 323 MET SER SER LYS PRO LYS PRO ILE GLU ILE ILE GLY ALA SEQRES 2 B 323 PRO PHE SER LYS GLY GLN PRO ARG GLY GLY VAL GLU LYS SEQRES 3 B 323 GLY PRO ALA ALA LEU ARG LYS ALA GLY LEU VAL GLU LYS SEQRES 4 B 323 LEU LYS GLU THR GLU TYR ASN VAL ARG ASP HIS GLY ASP SEQRES 5 B 323 LEU ALA PHE VAL ASP VAL PRO ASN ASP SER PRO PHE GLN SEQRES 6 B 323 ILE VAL LYS ASN PRO ARG SER VAL GLY LYS ALA ASN GLU SEQRES 7 B 323 GLN LEU ALA ALA VAL VAL ALA GLU THR GLN LYS ASN GLY SEQRES 8 B 323 THR ILE SER VAL VAL LEU GLY GLY ASP HIS SER MET ALA SEQRES 9 B 323 ILE GLY SER ILE SER GLY HIS ALA ARG VAL HIS PRO ASP SEQRES 10 B 323 LEU CYS VAL ILE TRP VAL ASP ALA HIS THR ASP ILE ASN SEQRES 11 B 323 THR PRO LEU THR THR SER SER GLY ASN LEU HIS GLY GLN SEQRES 12 B 323 PRO VAL ALA PHE LEU LEU LYS GLU LEU LYS GLY LYS PHE SEQRES 13 B 323 PRO ASP VAL PRO GLY PHE SER TRP VAL THR PRO CYS ILE SEQRES 14 B 323 SER ALA LYS ASP ILE VAL TYR ILE GLY LEU ARG ASP VAL SEQRES 15 B 323 ASP PRO GLY GLU HIS TYR ILE ILE LYS THR LEU GLY ILE SEQRES 16 B 323 LYS TYR PHE SER MET THR GLU VAL ASP LYS LEU GLY ILE SEQRES 17 B 323 GLY LYS VAL MET GLU GLU THR PHE SER TYR LEU LEU GLY SEQRES 18 B 323 ARG LYS LYS ARG PRO ILE HIS LEU SER PHE ASP VAL ASP SEQRES 19 B 323 GLY LEU ASP PRO VAL PHE THR PRO ALA THR GLY THR PRO SEQRES 20 B 323 VAL VAL GLY GLY LEU SER TYR ARG GLU GLY LEU TYR ILE SEQRES 21 B 323 THR GLU GLU ILE TYR LYS THR GLY LEU LEU SER GLY LEU SEQRES 22 B 323 ASP ILE MET GLU VAL ASN PRO THR LEU GLY LYS THR PRO SEQRES 23 B 323 GLU GLU VAL THR ARG THR VAL ASN THR ALA VAL ALA LEU SEQRES 24 B 323 THR LEU SER CYS PHE GLY THR LYS ARG GLU GLY ASN HIS SEQRES 25 B 323 LYS PRO GLU THR ASP TYR LEU LYS PRO PRO LYS SEQRES 1 C 323 MET SER SER LYS PRO LYS PRO ILE GLU ILE ILE GLY ALA SEQRES 2 C 323 PRO PHE SER LYS GLY GLN PRO ARG GLY GLY VAL GLU LYS SEQRES 3 C 323 GLY PRO ALA ALA LEU ARG LYS ALA GLY LEU VAL GLU LYS SEQRES 4 C 323 LEU LYS GLU THR GLU TYR ASN VAL ARG ASP HIS GLY ASP SEQRES 5 C 323 LEU ALA PHE VAL ASP VAL PRO ASN ASP SER PRO PHE GLN SEQRES 6 C 323 ILE VAL LYS ASN PRO ARG SER VAL GLY LYS ALA ASN GLU SEQRES 7 C 323 GLN LEU ALA ALA VAL VAL ALA GLU THR GLN LYS ASN GLY SEQRES 8 C 323 THR ILE SER VAL VAL LEU GLY GLY ASP HIS SER MET ALA SEQRES 9 C 323 ILE GLY SER ILE SER GLY HIS ALA ARG VAL HIS PRO ASP SEQRES 10 C 323 LEU CYS VAL ILE TRP VAL ASP ALA HIS THR ASP ILE ASN SEQRES 11 C 323 THR PRO LEU THR THR SER SER GLY ASN LEU HIS GLY GLN SEQRES 12 C 323 PRO VAL ALA PHE LEU LEU LYS GLU LEU LYS GLY LYS PHE SEQRES 13 C 323 PRO ASP VAL PRO GLY PHE SER TRP VAL THR PRO CYS ILE SEQRES 14 C 323 SER ALA LYS ASP ILE VAL TYR ILE GLY LEU ARG ASP VAL SEQRES 15 C 323 ASP PRO GLY GLU HIS TYR ILE ILE LYS THR LEU GLY ILE SEQRES 16 C 323 LYS TYR PHE SER MET THR GLU VAL ASP LYS LEU GLY ILE SEQRES 17 C 323 GLY LYS VAL MET GLU GLU THR PHE SER TYR LEU LEU GLY SEQRES 18 C 323 ARG LYS LYS ARG PRO ILE HIS LEU SER PHE ASP VAL ASP SEQRES 19 C 323 GLY LEU ASP PRO VAL PHE THR PRO ALA THR GLY THR PRO SEQRES 20 C 323 VAL VAL GLY GLY LEU SER TYR ARG GLU GLY LEU TYR ILE SEQRES 21 C 323 THR GLU GLU ILE TYR LYS THR GLY LEU LEU SER GLY LEU SEQRES 22 C 323 ASP ILE MET GLU VAL ASN PRO THR LEU GLY LYS THR PRO SEQRES 23 C 323 GLU GLU VAL THR ARG THR VAL ASN THR ALA VAL ALA LEU SEQRES 24 C 323 THR LEU SER CYS PHE GLY THR LYS ARG GLU GLY ASN HIS SEQRES 25 C 323 LYS PRO GLU THR ASP TYR LEU LYS PRO PRO LYS HET MN A 500 1 HET MN A 501 1 HET HAR A 906 13 HET MN B 502 1 HET MN B 503 1 HET HAR B 907 13 HET MN C 504 1 HET MN C 505 1 HET HAR C 908 13 HETNAM MN MANGANESE (II) ION HETNAM HAR N-OMEGA-HYDROXY-L-ARGININE FORMUL 4 MN 6(MN 2+) FORMUL 6 HAR 3(C6 H14 N4 O3) FORMUL 13 HOH *15(H2 O) HELIX 1 1 GLY A 23 GLU A 25 5 3 HELIX 2 2 LYS A 26 ALA A 34 1 9 HELIX 3 3 GLY A 35 GLU A 42 1 8 HELIX 4 4 ASN A 69 GLY A 91 1 23 HELIX 5 5 SER A 102 HIS A 115 1 14 HELIX 6 6 ASN A 139 GLY A 142 5 4 HELIX 7 7 GLN A 143 LEU A 149 1 7 HELIX 8 8 ASP A 183 LEU A 193 1 11 HELIX 9 9 SER A 199 GLY A 207 1 9 HELIX 10 10 GLY A 207 GLY A 221 1 15 HELIX 11 11 SER A 253 LYS A 266 1 14 HELIX 12 12 THR A 285 PHE A 304 1 20 HELIX 13 13 GLY B 23 GLU B 25 5 3 HELIX 14 14 LYS B 26 ALA B 34 1 9 HELIX 15 15 GLY B 35 GLU B 42 1 8 HELIX 16 16 ASN B 69 GLY B 91 1 23 HELIX 17 17 SER B 102 HIS B 115 1 14 HELIX 18 18 ASN B 139 GLY B 142 5 4 HELIX 19 19 GLN B 143 LEU B 149 1 7 HELIX 20 20 ASP B 183 LEU B 193 1 11 HELIX 21 21 SER B 199 GLY B 207 1 9 HELIX 22 22 GLY B 207 GLY B 221 1 15 HELIX 23 23 SER B 253 LYS B 266 1 14 HELIX 24 24 THR B 285 PHE B 304 1 20 HELIX 25 25 GLY C 23 GLU C 25 5 3 HELIX 26 26 LYS C 26 ALA C 34 1 9 HELIX 27 27 GLY C 35 GLU C 42 1 8 HELIX 28 28 ASN C 69 GLY C 91 1 23 HELIX 29 29 SER C 102 HIS C 115 1 14 HELIX 30 30 ASN C 139 GLY C 142 5 4 HELIX 31 31 GLN C 143 LEU C 149 1 7 HELIX 32 32 ASP C 183 LEU C 193 1 11 HELIX 33 33 SER C 199 GLY C 207 1 9 HELIX 34 34 GLY C 207 GLY C 221 1 15 HELIX 35 35 SER C 253 LYS C 266 1 14 HELIX 36 36 THR C 285 PHE C 304 1 20 SHEET 1 A 8 ASN A 46 ASP A 52 0 SHEET 2 A 8 PRO A 7 GLY A 12 1 N ILE A 8 O ASN A 46 SHEET 3 A 8 ILE A 93 LEU A 97 1 N ILE A 93 O PRO A 7 SHEET 4 A 8 LEU A 270 MET A 276 1 O SER A 271 N SER A 94 SHEET 5 A 8 ILE A 227 ASP A 232 1 O ILE A 227 N SER A 271 SHEET 6 A 8 VAL A 120 VAL A 123 1 O ILE A 121 N SER A 230 SHEET 7 A 8 ILE A 174 ILE A 177 1 O VAL A 175 N TRP A 122 SHEET 8 A 8 TYR A 197 PHE A 198 1 N PHE A 198 O TYR A 176 SHEET 1 B 8 ASN B 46 ASP B 52 0 SHEET 2 B 8 PRO B 7 GLY B 12 1 N ILE B 8 O ASN B 46 SHEET 3 B 8 ILE B 93 LEU B 97 1 N ILE B 93 O PRO B 7 SHEET 4 B 8 LEU B 270 MET B 276 1 O SER B 271 N SER B 94 SHEET 5 B 8 ILE B 227 ASP B 232 1 O ILE B 227 N SER B 271 SHEET 6 B 8 VAL B 120 VAL B 123 1 O ILE B 121 N SER B 230 SHEET 7 B 8 ILE B 174 ILE B 177 1 O VAL B 175 N TRP B 122 SHEET 8 B 8 TYR B 197 PHE B 198 1 N PHE B 198 O TYR B 176 SHEET 1 C 8 ASN C 46 ASP C 52 0 SHEET 2 C 8 PRO C 7 GLY C 12 1 N ILE C 8 O ASN C 46 SHEET 3 C 8 ILE C 93 LEU C 97 1 N ILE C 93 O PRO C 7 SHEET 4 C 8 LEU C 270 MET C 276 1 O SER C 271 N SER C 94 SHEET 5 C 8 ILE C 227 ASP C 232 1 O ILE C 227 N SER C 271 SHEET 6 C 8 VAL C 120 VAL C 123 1 O ILE C 121 N SER C 230 SHEET 7 C 8 ILE C 174 ILE C 177 1 O VAL C 175 N TRP C 122 SHEET 8 C 8 TYR C 197 PHE C 198 1 N PHE C 198 O TYR C 176 LINK ND1 HIS A 101 MN MN A 500 1555 1555 2.35 LINK OD2 ASP A 124 MN MN A 500 1555 1555 2.03 LINK OD1 ASP A 124 MN MN A 501 1555 1555 2.19 LINK ND1 HIS A 126 MN MN A 501 1555 1555 1.99 LINK OD2 ASP A 128 MN MN A 500 1555 1555 2.08 LINK OD2 ASP A 232 MN MN A 501 1555 1555 2.49 LINK OD1 ASP A 234 MN MN A 501 1555 1555 2.48 LINK OD2 ASP A 234 MN MN A 501 1555 1555 2.01 LINK MN MN A 500 OH1 HAR A 906 1555 1555 2.64 LINK MN MN A 501 OH1 HAR A 906 1555 1555 2.21 LINK MN MN A 501 NH1 HAR A 906 1555 1555 2.34 LINK ND1 HIS B 101 MN MN B 502 1555 1555 2.35 LINK OD2 ASP B 124 MN MN B 502 1555 1555 2.03 LINK OD1 ASP B 124 MN MN B 503 1555 1555 2.19 LINK ND1 HIS B 126 MN MN B 503 1555 1555 1.99 LINK OD2 ASP B 128 MN MN B 502 1555 1555 2.08 LINK OD2 ASP B 232 MN MN B 503 1555 1555 2.49 LINK OD1 ASP B 234 MN MN B 503 1555 1555 2.58 LINK OD2 ASP B 234 MN MN B 503 1555 1555 1.89 LINK MN MN B 502 OH1 HAR B 907 1555 1555 2.64 LINK MN MN B 503 OH1 HAR B 907 1555 1555 2.21 LINK MN MN B 503 NH1 HAR B 907 1555 1555 2.34 LINK ND1 HIS C 101 MN MN C 504 1555 1555 2.35 LINK OD2 ASP C 124 MN MN C 504 1555 1555 2.03 LINK OD1 ASP C 124 MN MN C 505 1555 1555 2.19 LINK ND1 HIS C 126 MN MN C 505 1555 1555 1.99 LINK OD2 ASP C 128 MN MN C 504 1555 1555 2.08 LINK OD2 ASP C 232 MN MN C 505 1555 1555 2.49 LINK OD1 ASP C 234 MN MN C 505 1555 1555 2.59 LINK OD2 ASP C 234 MN MN C 505 1555 1555 1.88 LINK MN MN C 504 OH1 HAR C 908 1555 1555 2.64 LINK MN MN C 505 OH1 HAR C 908 1555 1555 2.21 LINK MN MN C 505 NH1 HAR C 908 1555 1555 2.34 SITE 1 AC1 5 HIS A 101 ASP A 124 ASP A 128 ASP A 232 SITE 2 AC1 5 HAR A 906 SITE 1 AC2 5 ASP A 124 HIS A 126 ASP A 232 ASP A 234 SITE 2 AC2 5 HAR A 906 SITE 1 AC3 5 HIS B 101 ASP B 124 ASP B 128 ASP B 232 SITE 2 AC3 5 HAR B 907 SITE 1 AC4 5 ASP B 124 HIS B 126 ASP B 232 ASP B 234 SITE 2 AC4 5 HAR B 907 SITE 1 AC5 5 HIS C 101 ASP C 124 ASP C 128 ASP C 232 SITE 2 AC5 5 HAR C 908 SITE 1 AC6 5 ASP C 124 HIS C 126 ASP C 232 ASP C 234 SITE 2 AC6 5 HAR C 908 SITE 1 AC7 13 ASP A 124 HIS A 126 ASP A 128 SER A 137 SITE 2 AC7 13 HIS A 141 GLY A 142 ASP A 183 GLU A 186 SITE 3 AC7 13 ASP A 232 ASP A 234 GLU A 277 MN A 500 SITE 4 AC7 13 MN A 501 SITE 1 AC8 13 ASP B 124 HIS B 126 ASP B 128 SER B 137 SITE 2 AC8 13 HIS B 141 GLY B 142 ASP B 183 GLU B 186 SITE 3 AC8 13 ASP B 232 ASP B 234 GLU B 277 MN B 502 SITE 4 AC8 13 MN B 503 SITE 1 AC9 13 ASP C 124 HIS C 126 ASP C 128 SER C 137 SITE 2 AC9 13 HIS C 141 GLY C 142 ASP C 183 GLU C 186 SITE 3 AC9 13 ASP C 232 ASP C 234 GLU C 277 MN C 504 SITE 4 AC9 13 MN C 505 CRYST1 88.000 88.000 112.000 90.00 90.00 120.00 P 32 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011364 0.006561 0.000000 0.00000 SCALE2 0.000000 0.013122 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008929 0.00000