HEADER SUGAR BINDING PROTEIN 18-DEC-00 1HQL TITLE THE XENOGRAFT ANTIGEN IN COMPLEX WITH THE B4 ISOLECTIN OF GRIFFONIA TITLE 2 SIMPLICIFOLIA LECTIN-1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LECTIN; COMPND 3 CHAIN: A, B SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GRIFFONIA SIMPLICIFOLIA; SOURCE 3 ORGANISM_TAXID: 3850; SOURCE 4 ORGAN: SEED KEYWDS GRIFFONIA SIMPLICIFOLIA, LECTIN, XENOGRAFT ANTIGEN, SUGAR BINDING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR W.TEMPEL,L.A.LIPSCOMB,J.P.ROSE,R.J.WOODS REVDAT 6 30-OCT-24 1HQL 1 REMARK HETSYN REVDAT 5 29-JUL-20 1HQL 1 COMPND REMARK SEQRES HETNAM REVDAT 5 2 1 LINK SITE ATOM REVDAT 4 13-JUL-11 1HQL 1 VERSN REVDAT 3 24-FEB-09 1HQL 1 VERSN REVDAT 2 05-APR-05 1HQL 1 JRNL REVDAT 1 16-JAN-02 1HQL 0 JRNL AUTH W.TEMPEL,S.TSCHAMPEL,R.J.WOODS JRNL TITL THE XENOGRAFT ANTIGEN BOUND TO GRIFFONIA SIMPLICIFOLIA JRNL TITL 2 LECTIN 1-B(4). X-RAY CRYSTAL STRUCTURE OF THE COMPLEX AND JRNL TITL 3 MOLECULAR DYNAMICS CHARACTERIZATION OF THE BINDING SITE. JRNL REF J.BIOL.CHEM. V. 277 6615 2002 JRNL REFN ISSN 0021-9258 JRNL PMID 11714721 JRNL DOI 10.1074/JBC.M109919200 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.93 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.0 REMARK 3 NUMBER OF REFLECTIONS : 22043 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : SHELLS REMARK 3 R VALUE (WORKING SET) : 0.233 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1500 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.34 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 79.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2815 REMARK 3 BIN R VALUE (WORKING SET) : 0.2540 REMARK 3 BIN FREE R VALUE : 0.2860 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 6.80 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 207 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3690 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 108 REMARK 3 SOLVENT ATOMS : 111 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -9.77000 REMARK 3 B22 (A**2) : 15.51000 REMARK 3 B33 (A**2) : -5.74000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.27 REMARK 3 ESD FROM SIGMAA (A) : 0.21 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.32 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.24 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 26.40 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.730 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.440 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.360 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.040 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.960 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.47 REMARK 3 BSOL : 115.3 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : CARBOHYDRATE.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 OCCUPANCY 0.00 SIGNIFIES ATOMS WITH MISSING OR UNINTERPRETABLE REMARK 3 DENSITY AND IS NOT THE RESULT OF OCCUPANCY REMARK 3 REFINEMENT. THE FIRST 3 N-TERMINAL AND LAST 18 C-TERMINAL REMARK 3 RESIDUES ARE MISSING IN THE ELECTRON DENSITY. REMARK 4 REMARK 4 1HQL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JAN-01. REMARK 100 THE DEPOSITION ID IS D_1000012522. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-OCT-99; 27-OCT-99 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N; N REMARK 200 RADIATION SOURCE : ROTATING ANODE; NULL REMARK 200 BEAMLINE : NULL; NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418; NULL REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : CONFOCAL; CONFOCAL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE; IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV; RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22043 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.14200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.41600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5MG/ML PROTEIN, APPROX. 5 EQU. SUGAR, REMARK 280 11% W/V PEG 4000, 8% V/V MPD, 6% V/V DMSO, 0.1M HEPES PH7.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 55.60500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.64000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 55.60500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 25.64000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE FULL TETRAMER IS GENERATED BY APPLYING THE FOLLOWING REMARK 300 OPERATION TO THE CONTENT OF THE ASYMMETRIC UNIT: 1-X,-Y,Z REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 111.21000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 548 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PCA A 1 REMARK 465 SER A 2 REMARK 465 ASP A 3 REMARK 465 GLN A 240 REMARK 465 SER A 241 REMARK 465 THR A 242 REMARK 465 SER A 243 REMARK 465 VAL A 244 REMARK 465 LYS A 245 REMARK 465 ALA A 246 REMARK 465 ALA A 247 REMARK 465 MET A 248 REMARK 465 GLU A 249 REMARK 465 PRO A 250 REMARK 465 GLU A 251 REMARK 465 ILE A 252 REMARK 465 THR A 253 REMARK 465 ARG A 254 REMARK 465 THR A 255 REMARK 465 VAL A 256 REMARK 465 VAL A 257 REMARK 465 PCA B 1 REMARK 465 SER B 2 REMARK 465 ASP B 3 REMARK 465 GLN B 240 REMARK 465 SER B 241 REMARK 465 THR B 242 REMARK 465 SER B 243 REMARK 465 VAL B 244 REMARK 465 LYS B 245 REMARK 465 ALA B 246 REMARK 465 ALA B 247 REMARK 465 MET B 248 REMARK 465 GLU B 249 REMARK 465 PRO B 250 REMARK 465 GLU B 251 REMARK 465 ILE B 252 REMARK 465 THR B 253 REMARK 465 ARG B 254 REMARK 465 THR B 255 REMARK 465 VAL B 256 REMARK 465 VAL B 257 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 LYS A 64 REMARK 475 THR A 65 REMARK 475 GLY A 193 REMARK 475 GLY B 193 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ASP A 15 CB CG OD1 OD2 REMARK 480 GLU A 17 CB CG CD OE1 OE2 REMARK 480 ASP A 18 CB CG OD1 OD2 REMARK 480 GLN A 59 CG CD OE1 NE2 REMARK 480 ASP A 62 C O OD1 OD2 REMARK 480 GLU A 66 N CA C O REMARK 480 SER A 67 N CA C O CB REMARK 480 ASP A 103 CG OD1 OD2 REMARK 480 PRO A 138 CG REMARK 480 ASP A 192 CB CG OD1 OD2 REMARK 480 SER A 194 N CA CB OG REMARK 480 ARG A 205 CD NE CZ NH1 NH2 REMARK 480 GLN A 206 CB CG CD REMARK 480 GLU A 210 CB CG CD OE1 OE2 REMARK 480 LEU A 239 CG CD1 CD2 REMARK 480 ASP B 15 CB CG OD1 OD2 REMARK 480 GLU B 17 CB CG CD OE1 OE2 REMARK 480 ASP B 18 CB CG OD1 OD2 REMARK 480 GLN B 59 CG CD OE1 NE2 REMARK 480 ASP B 62 C O CG OD1 OD2 REMARK 480 ASP B 103 CG OD1 OD2 REMARK 480 PRO B 138 CG REMARK 480 ASP B 192 CB CG OD1 OD2 REMARK 480 ARG B 205 CD NE CZ NH1 NH2 REMARK 480 GLN B 206 CB CG CD REMARK 480 LEU B 239 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 11 -178.22 -170.49 REMARK 500 ASP A 18 48.23 -89.29 REMARK 500 SER A 19 -25.09 -165.08 REMARK 500 TRP A 47 58.59 39.56 REMARK 500 ASN A 63 -89.27 -98.89 REMARK 500 GLU A 66 84.56 56.53 REMARK 500 SER A 67 91.86 -173.78 REMARK 500 LYS A 102 -142.93 -105.56 REMARK 500 ALA A 104 -159.52 -82.56 REMARK 500 ASP A 192 -79.06 -60.90 REMARK 500 ASP B 18 39.70 -90.67 REMARK 500 SER B 19 -21.34 -156.58 REMARK 500 GLU B 66 -0.14 63.66 REMARK 500 LYS B 102 -145.01 -107.10 REMARK 500 ALA B 104 -158.56 -86.29 REMARK 500 ASP B 192 -78.54 -64.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 MBG C 1 REMARK 615 NAG D 1 REMARK 615 NAG D 2 REMARK 615 MBG E 1 REMARK 615 NAG F 1 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 301 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 128 OE2 REMARK 620 2 ASP A 130 OD2 96.7 REMARK 620 3 GLU A 139 OE1 167.7 86.9 REMARK 620 4 HIS A 144 NE2 89.0 99.3 102.0 REMARK 620 5 HOH A 508 O 85.7 87.2 82.7 172.1 REMARK 620 6 HOH A 509 O 80.9 176.2 94.8 83.7 89.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 130 OD2 REMARK 620 2 ASP A 130 OD1 56.1 REMARK 620 3 TRP A 132 O 110.9 68.6 REMARK 620 4 ASN A 134 OD1 159.1 143.6 87.8 REMARK 620 5 GLU A 139 OE2 93.2 119.1 79.5 80.9 REMARK 620 6 HOH A 504 O 103.4 68.6 90.3 84.9 162.9 REMARK 620 7 HOH A 506 O 73.1 115.6 175.7 88.0 98.8 90.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 301 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 128 OE2 REMARK 620 2 ASP B 130 OD2 98.3 REMARK 620 3 GLU B 139 OE1 169.4 89.1 REMARK 620 4 HIS B 144 NE2 88.6 96.5 98.2 REMARK 620 5 HOH B 508 O 87.0 95.6 84.7 167.6 REMARK 620 6 HOH B 509 O 87.9 172.7 84.3 87.4 80.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 130 OD1 REMARK 620 2 ASP B 130 OD2 53.0 REMARK 620 3 TRP B 132 O 71.6 109.1 REMARK 620 4 ASN B 134 OD1 150.1 156.2 90.4 REMARK 620 5 GLU B 139 OE2 114.8 86.9 79.2 83.5 REMARK 620 6 HOH B 504 O 70.6 106.2 90.5 86.5 165.5 REMARK 620 7 HOH B 513 O 113.7 74.0 174.5 85.5 96.8 92.9 REMARK 620 N 1 2 3 4 5 6 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1GSL RELATED DB: PDB REMARK 900 GRIFFONIA SIMPLICIFOLIA LECTIN-4 REMARK 900 RELATED ID: 1GNZ RELATED DB: PDB REMARK 900 LECTIN I-B4 FROM GRIFFONIA SIMPLICIFOLIA (GS I-B4) METAL FREE FORM DBREF 1HQL A 11 257 UNP Q8W1R6 Q8W1R6_GRISI 1 247 DBREF 1HQL B 11 257 UNP Q8W1R6 Q8W1R6_GRISI 1 247 SEQRES 1 A 257 PCA SER ASP SER VAL SER PHE THR PHE PRO ASN PHE TRP SEQRES 2 A 257 SER ASP VAL GLU ASP SER ILE ILE PHE GLN GLY ASP ALA SEQRES 3 A 257 ASN THR THR ALA GLY THR LEU GLN LEU CYS LYS THR ASN SEQRES 4 A 257 GLN TYR GLY THR PRO LEU GLN TRP SER ALA GLY ARG ALA SEQRES 5 A 257 LEU TYR SER ASP PRO VAL GLN LEU TRP ASP ASN LYS THR SEQRES 6 A 257 GLU SER VAL ALA SER PHE TYR THR GLU PHE THR PHE PHE SEQRES 7 A 257 LEU LYS ILE THR GLY ASN GLY PRO ALA ASP GLY LEU ALA SEQRES 8 A 257 PHE PHE LEU ALA PRO PRO ASP SER ASP VAL LYS ASP ALA SEQRES 9 A 257 GLY GLU TYR LEU GLY LEU PHE ASN LYS SER THR ALA THR SEQRES 10 A 257 GLN PRO SER LYS ASN GLN VAL VAL ALA VAL GLU PHE ASP SEQRES 11 A 257 THR TRP THR ASN PRO ASN PHE PRO GLU PRO SER TYR ARG SEQRES 12 A 257 HIS ILE GLY ILE ASN VAL ASN SER ILE VAL SER VAL ALA SEQRES 13 A 257 THR LYS ARG TRP GLU ASP SER ASP ILE PHE SER GLY LYS SEQRES 14 A 257 ILE ALA THR ALA ARG ILE SER TYR ASP GLY SER ALA GLU SEQRES 15 A 257 ILE LEU THR VAL VAL LEU SER TYR PRO ASP GLY SER ASP SEQRES 16 A 257 TYR ILE LEU SER HIS SER VAL ASP MET ARG GLN ASN LEU SEQRES 17 A 257 PRO GLU SER VAL ARG VAL GLY ILE SER ALA SER THR GLY SEQRES 18 A 257 ASN ASN GLN PHE LEU THR VAL TYR ILE LEU SER TRP ARG SEQRES 19 A 257 PHE SER SER ASN LEU GLN SER THR SER VAL LYS ALA ALA SEQRES 20 A 257 MET GLU PRO GLU ILE THR ARG THR VAL VAL SEQRES 1 B 257 PCA SER ASP SER VAL SER PHE THR PHE PRO ASN PHE TRP SEQRES 2 B 257 SER ASP VAL GLU ASP SER ILE ILE PHE GLN GLY ASP ALA SEQRES 3 B 257 ASN THR THR ALA GLY THR LEU GLN LEU CYS LYS THR ASN SEQRES 4 B 257 GLN TYR GLY THR PRO LEU GLN TRP SER ALA GLY ARG ALA SEQRES 5 B 257 LEU TYR SER ASP PRO VAL GLN LEU TRP ASP ASN LYS THR SEQRES 6 B 257 GLU SER VAL ALA SER PHE TYR THR GLU PHE THR PHE PHE SEQRES 7 B 257 LEU LYS ILE THR GLY ASN GLY PRO ALA ASP GLY LEU ALA SEQRES 8 B 257 PHE PHE LEU ALA PRO PRO ASP SER ASP VAL LYS ASP ALA SEQRES 9 B 257 GLY GLU TYR LEU GLY LEU PHE ASN LYS SER THR ALA THR SEQRES 10 B 257 GLN PRO SER LYS ASN GLN VAL VAL ALA VAL GLU PHE ASP SEQRES 11 B 257 THR TRP THR ASN PRO ASN PHE PRO GLU PRO SER TYR ARG SEQRES 12 B 257 HIS ILE GLY ILE ASN VAL ASN SER ILE VAL SER VAL ALA SEQRES 13 B 257 THR LYS ARG TRP GLU ASP SER ASP ILE PHE SER GLY LYS SEQRES 14 B 257 ILE ALA THR ALA ARG ILE SER TYR ASP GLY SER ALA GLU SEQRES 15 B 257 ILE LEU THR VAL VAL LEU SER TYR PRO ASP GLY SER ASP SEQRES 16 B 257 TYR ILE LEU SER HIS SER VAL ASP MET ARG GLN ASN LEU SEQRES 17 B 257 PRO GLU SER VAL ARG VAL GLY ILE SER ALA SER THR GLY SEQRES 18 B 257 ASN ASN GLN PHE LEU THR VAL TYR ILE LEU SER TRP ARG SEQRES 19 B 257 PHE SER SER ASN LEU GLN SER THR SER VAL LYS ALA ALA SEQRES 20 B 257 MET GLU PRO GLU ILE THR ARG THR VAL VAL MODRES 1HQL ASN A 27 ASN GLYCOSYLATION SITE MODRES 1HQL ASN B 27 ASN GLYCOSYLATION SITE HET MBG C 1 13 HET GLA C 2 11 HET NAG D 1 14 HET NAG D 2 14 HET MBG E 1 13 HET GLA E 2 11 HET NAG F 1 14 HET NAG F 2 14 HET MN A 301 1 HET CA A 302 1 HET MN B 301 1 HET CA B 302 1 HETNAM MBG METHYL BETA-D-GALACTOPYRANOSIDE HETNAM GLA ALPHA-D-GALACTOPYRANOSE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM MN MANGANESE (II) ION HETNAM CA CALCIUM ION HETSYN MBG METHYL-BETA-GALACTOSE; METHYL BETA-D-GALACTOSIDE; HETSYN 2 MBG METHYL D-GALACTOSIDE; METHYL GALACTOSIDE HETSYN GLA ALPHA-D-GALACTOSE; D-GALACTOSE; GALACTOSE; ALPHA D- HETSYN 2 GLA GALACTOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 MBG 2(C7 H14 O6) FORMUL 3 GLA 2(C6 H12 O6) FORMUL 4 NAG 4(C8 H15 N O6) FORMUL 7 MN 2(MN 2+) FORMUL 8 CA 2(CA 2+) FORMUL 11 HOH *111(H2 O) HELIX 1 1 ASP A 15 ASP A 18 5 4 HELIX 2 2 ALA A 104 LEU A 108 5 5 HELIX 3 3 GLN A 118 ASN A 122 5 5 HELIX 4 4 GLU A 161 PHE A 166 1 6 HELIX 5 5 ASP A 203 ASN A 207 5 5 HELIX 6 6 ASP B 15 ASP B 18 5 4 HELIX 7 7 ALA B 104 LEU B 108 5 5 HELIX 8 8 GLN B 118 ASN B 122 5 5 HELIX 9 9 GLU B 161 PHE B 166 1 6 HELIX 10 10 ASP B 203 ASN B 207 5 5 SHEET 1 A 6 SER A 194 SER A 201 0 SHEET 2 A 6 ILE A 183 TYR A 190 -1 N LEU A 188 O TYR A 196 SHEET 3 A 6 ALA A 171 ASP A 178 -1 N SER A 176 O THR A 185 SHEET 4 A 6 SER A 70 ILE A 81 -1 N PHE A 75 O ALA A 173 SHEET 5 A 6 LEU A 226 ASN A 238 -1 O ASN A 238 N SER A 70 SHEET 6 A 6 SER A 6 PHE A 9 -1 N PHE A 9 O TRP A 233 SHEET 1 B 7 SER A 194 SER A 201 0 SHEET 2 B 7 ILE A 183 TYR A 190 -1 N LEU A 188 O TYR A 196 SHEET 3 B 7 ALA A 171 ASP A 178 -1 N SER A 176 O THR A 185 SHEET 4 B 7 SER A 70 ILE A 81 -1 N PHE A 75 O ALA A 173 SHEET 5 B 7 LEU A 226 ASN A 238 -1 O ASN A 238 N SER A 70 SHEET 6 B 7 THR A 32 GLN A 34 -1 N LEU A 33 O ILE A 230 SHEET 7 B 7 ASN A 27 THR A 29 -1 N ASN A 27 O GLN A 34 SHEET 1 C 7 ALA A 156 ARG A 159 0 SHEET 2 C 7 HIS A 144 VAL A 149 -1 N ILE A 145 O LYS A 158 SHEET 3 C 7 VAL A 125 ASP A 130 -1 N ALA A 126 O ASN A 148 SHEET 4 C 7 GLY A 89 ALA A 95 -1 N LEU A 90 O PHE A 129 SHEET 5 C 7 SER A 211 SER A 219 -1 O ARG A 213 N ALA A 95 SHEET 6 C 7 ALA A 49 TYR A 54 -1 N ALA A 52 O ILE A 216 SHEET 7 C 7 ILE A 20 GLY A 24 -1 N ILE A 21 O LEU A 53 SHEET 1 D 6 ALA A 156 ARG A 159 0 SHEET 2 D 6 HIS A 144 VAL A 149 -1 N ILE A 145 O LYS A 158 SHEET 3 D 6 VAL A 125 ASP A 130 -1 N ALA A 126 O ASN A 148 SHEET 4 D 6 GLY A 89 ALA A 95 -1 N LEU A 90 O PHE A 129 SHEET 5 D 6 SER A 211 SER A 219 -1 O ARG A 213 N ALA A 95 SHEET 6 D 6 VAL A 58 GLN A 59 -1 N VAL A 58 O VAL A 212 SHEET 1 E 6 SER B 194 SER B 201 0 SHEET 2 E 6 ILE B 183 TYR B 190 -1 N LEU B 188 O TYR B 196 SHEET 3 E 6 ALA B 171 ASP B 178 -1 N THR B 172 O SER B 189 SHEET 4 E 6 SER B 70 ILE B 81 -1 N PHE B 75 O ALA B 173 SHEET 5 E 6 LEU B 226 ASN B 238 -1 O ASN B 238 N SER B 70 SHEET 6 E 6 VAL B 5 PHE B 9 -1 N PHE B 7 O PHE B 235 SHEET 1 F 7 SER B 194 SER B 201 0 SHEET 2 F 7 ILE B 183 TYR B 190 -1 N LEU B 188 O TYR B 196 SHEET 3 F 7 ALA B 171 ASP B 178 -1 N THR B 172 O SER B 189 SHEET 4 F 7 SER B 70 ILE B 81 -1 N PHE B 75 O ALA B 173 SHEET 5 F 7 LEU B 226 ASN B 238 -1 O ASN B 238 N SER B 70 SHEET 6 F 7 THR B 32 GLN B 34 -1 N LEU B 33 O ILE B 230 SHEET 7 F 7 ASN B 27 THR B 29 -1 N THR B 29 O THR B 32 SHEET 1 G 7 ALA B 156 ARG B 159 0 SHEET 2 G 7 HIS B 144 VAL B 149 -1 N ILE B 145 O LYS B 158 SHEET 3 G 7 VAL B 125 ASP B 130 -1 N ALA B 126 O ASN B 148 SHEET 4 G 7 GLY B 89 ALA B 95 -1 N LEU B 90 O PHE B 129 SHEET 5 G 7 SER B 211 SER B 219 -1 O SER B 217 N ALA B 91 SHEET 6 G 7 ALA B 49 TYR B 54 -1 N ALA B 52 O ILE B 216 SHEET 7 G 7 ILE B 20 GLY B 24 -1 N ILE B 21 O LEU B 53 SHEET 1 H 6 ALA B 156 ARG B 159 0 SHEET 2 H 6 HIS B 144 VAL B 149 -1 N ILE B 145 O LYS B 158 SHEET 3 H 6 VAL B 125 ASP B 130 -1 N ALA B 126 O ASN B 148 SHEET 4 H 6 GLY B 89 ALA B 95 -1 N LEU B 90 O PHE B 129 SHEET 5 H 6 SER B 211 SER B 219 -1 O SER B 217 N ALA B 91 SHEET 6 H 6 VAL B 58 GLN B 59 -1 N VAL B 58 O VAL B 212 LINK ND2 ASN A 27 C1 NAG D 1 1555 1555 1.47 LINK ND2 ASN B 27 C1 NAG F 1 1555 1555 1.46 LINK O3 MBG C 1 C1 GLA C 2 1555 1555 1.40 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.38 LINK O3 MBG E 1 C1 GLA E 2 1555 1555 1.41 LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.39 LINK OE2 GLU A 128 MN MN A 301 1555 1555 2.19 LINK OD2 ASP A 130 MN MN A 301 1555 1555 2.29 LINK OD2 ASP A 130 CA CA A 302 1555 1555 2.22 LINK OD1 ASP A 130 CA CA A 302 1555 1555 2.44 LINK O TRP A 132 CA CA A 302 1555 1555 2.29 LINK OD1 ASN A 134 CA CA A 302 1555 1555 2.38 LINK OE1 GLU A 139 MN MN A 301 1555 1555 2.20 LINK OE2 GLU A 139 CA CA A 302 1555 1555 2.59 LINK NE2 HIS A 144 MN MN A 301 1555 1555 2.28 LINK MN MN A 301 O HOH A 508 1555 1555 2.22 LINK MN MN A 301 O HOH A 509 1555 1555 2.19 LINK CA CA A 302 O HOH A 504 1555 1555 2.42 LINK CA CA A 302 O HOH A 506 1555 1555 2.51 LINK OE2 GLU B 128 MN MN B 301 1555 1555 2.16 LINK OD2 ASP B 130 MN MN B 301 1555 1555 2.22 LINK OD1 ASP B 130 CA CA B 302 1555 1555 2.50 LINK OD2 ASP B 130 CA CA B 302 1555 1555 2.38 LINK O TRP B 132 CA CA B 302 1555 1555 2.24 LINK OD1 ASN B 134 CA CA B 302 1555 1555 2.39 LINK OE1 GLU B 139 MN MN B 301 1555 1555 2.24 LINK OE2 GLU B 139 CA CA B 302 1555 1555 2.58 LINK NE2 HIS B 144 MN MN B 301 1555 1555 2.30 LINK MN MN B 301 O HOH B 508 1555 1555 2.11 LINK MN MN B 301 O HOH B 509 1555 1555 2.10 LINK CA CA B 302 O HOH B 504 1555 1555 2.45 LINK CA CA B 302 O HOH B 513 1555 1555 2.43 CISPEP 1 ALA A 87 ASP A 88 0 0.00 CISPEP 2 ALA B 87 ASP B 88 0 0.04 CRYST1 111.210 51.280 77.110 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008992 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019501 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012968 0.00000