HEADER IMMUNE SYSTEM 19-DEC-00 1HQR TITLE CRYSTAL STRUCTURE OF A SUPERANTIGEN BOUND TO THE HIGH- TITLE 2 AFFINITY, ZINC-DEPENDENT SITE ON MHC CLASS II COMPND MOL_ID: 1; COMPND 2 MOLECULE: HLA-DR ALPHA CHAIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DRA*0101; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: HLA-DR BETA CHAIN; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: DRB5*0101; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: MYELIN BASIC PROTEIN; COMPND 13 CHAIN: C; COMPND 14 SYNONYM: MBP; COMPND 15 ENGINEERED: YES; COMPND 16 MOL_ID: 4; COMPND 17 MOLECULE: STREPTOCOCCAL PYROGENIC EXOTOXIN C; COMPND 18 CHAIN: D; COMPND 19 SYNONYM: SPE-C; COMPND 20 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21DE3; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 14 MOL_ID: 3; SOURCE 15 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 16 ORGANISM_COMMON: HUMAN; SOURCE 17 ORGANISM_TAXID: 9606; SOURCE 18 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 20 MOL_ID: 4; SOURCE 21 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PYOGENES; SOURCE 22 ORGANISM_TAXID: 1314; SOURCE 23 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 24 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SUPERANTIGEN-MHC CLASS II COMPLEX, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR Y.LI,H.LI,N.DIMASI,P.SCHLIEVERT,R.MARIUZZA REVDAT 4 24-FEB-09 1HQR 1 VERSN REVDAT 3 01-APR-03 1HQR 1 JRNL REVDAT 2 04-APR-01 1HQR 1 JRNL REVDAT 1 03-JAN-01 1HQR 0 JRNL AUTH Y.LI,H.LI,N.DIMASI,J.K.MCCORMICK,R.MARTIN,P.SCHUCK, JRNL AUTH 2 P.M.SCHLIEVERT,R.A.MARIUZZA JRNL TITL CRYSTAL STRUCTURE OF A SUPERANTIGEN BOUND TO THE JRNL TITL 2 HIGH-AFFINITY, ZINC-DEPENDENT SITE ON MHC CLASS II. JRNL REF IMMUNITY V. 14 93 2001 JRNL REFN ISSN 1074-7613 JRNL PMID 11163233 JRNL DOI 10.1016/S1074-7613(01)00092-9 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 0.4 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 100.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1943820.410 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 90.2 REMARK 3 NUMBER OF REFLECTIONS : 11585 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.288 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1187 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.008 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.40 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.50 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1715 REMARK 3 BIN R VALUE (WORKING SET) : 0.2730 REMARK 3 BIN FREE R VALUE : 0.3230 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 12.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 234 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.021 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4538 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 54.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 12.45000 REMARK 3 B22 (A**2) : -14.05000 REMARK 3 B33 (A**2) : 1.59000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.35 REMARK 3 ESD FROM SIGMAA (A) : 0.38 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.47 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.50 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.40 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.70 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.87 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 10.110; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 15.290; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 10.900; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 15.390; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 69.48 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1HQR COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-DEC-00. REMARK 100 THE RCSB ID CODE IS RCSB012528. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAR-00 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11585 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.36200 REMARK 200 R SYM FOR SHELL (I) : 0.36000 REMARK 200 FOR SHELL : 5.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, PEG 400, SODIUM REMARK 280 CACODYLATE, ZNCL, PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 30.91350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 55.97500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 108.30850 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 30.91350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 55.97500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 108.30850 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 30.91350 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 55.97500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 108.30850 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 30.91350 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 55.97500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 108.30850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 1 REMARK 465 LYS A 2 REMARK 465 THR A 130 REMARK 465 GLY B 201 REMARK 465 ARG B 305 REMARK 465 THR B 306 REMARK 465 GLN B 307 REMARK 465 THR B 308 REMARK 465 LEU B 309 REMARK 465 GLN B 310 REMARK 465 HIS B 311 REMARK 465 SER B 367 REMARK 465 GLY B 368 REMARK 465 ARG C 416 REMARK 465 THR C 417 REMARK 465 PRO C 418 REMARK 465 ASP D 501 REMARK 465 SER D 502 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 3 CG CD OE1 OE2 REMARK 470 LYS A 39 CD CE NZ REMARK 470 GLU A 40 CG CD OE1 OE2 REMARK 470 GLU A 46 CG CD OE1 OE2 REMARK 470 LYS A 67 CD CE NZ REMARK 470 LYS A 75 CE NZ REMARK 470 LEU A 92 CG CD1 CD2 REMARK 470 GLU A 98 CD OE1 OE2 REMARK 470 THR A 120 OG1 CG2 REMARK 470 ARG A 123 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 126 CG CD CE NZ REMARK 470 THR A 129 O REMARK 470 VAL A 132 CG1 CG2 REMARK 470 SER A 133 OG REMARK 470 ARG A 164 CZ NH1 NH2 REMARK 470 GLU A 172 CG CD OE1 OE2 REMARK 470 LYS A 176 CD CE NZ REMARK 470 ASP A 181 O CG OD1 OD2 REMARK 470 THR B 203 OG1 CG2 REMARK 470 ASN B 219 OD1 ND2 REMARK 470 GLU B 259 CG CD OE1 OE2 REMARK 470 GLN B 264 CG CD OE1 NE2 REMARK 470 GLU B 269 CG CD OE1 OE2 REMARK 470 GLU B 296 CG CD OE1 OE2 REMARK 470 LYS B 298 CD CE NZ REMARK 470 HIS B 312 CG ND1 CD2 CE1 NE2 REMARK 470 ASN B 313 CG OD1 ND2 REMARK 470 LEU B 315 CG CD1 CD2 REMARK 470 VAL B 316 CG1 CG2 REMARK 470 SER B 326 OG REMARK 470 GLU B 328 CG CD OE1 OE2 REMARK 470 ARG B 330 CG CD NE CZ NH1 NH2 REMARK 470 SER B 335 OG REMARK 470 GLN B 336 CG CD OE1 NE2 REMARK 470 GLU B 337 CG CD OE1 OE2 REMARK 470 LYS B 339 CG CD CE NZ REMARK 470 GLN B 349 CD OE1 NE2 REMARK 470 GLU B 362 CG CD OE1 OE2 REMARK 470 PRO B 365 CG CD REMARK 470 ARG B 366 O CG CD NE CZ NH1 NH2 REMARK 470 GLN B 374 CG CD OE1 NE2 REMARK 470 GLU B 376 CG CD OE1 OE2 REMARK 470 VAL B 380 CG1 CG2 REMARK 470 VAL B 386 CG1 CG2 REMARK 470 GLU B 387 CG CD OE1 OE2 REMARK 470 ARG B 389 NE CZ NH1 NH2 REMARK 470 LYS D 503 N CA CB CG CD CE NZ REMARK 470 LYS D 510 CG CD CE NZ REMARK 470 SER D 532 OG REMARK 470 HIS D 535 CG ND1 CD2 CE1 NE2 REMARK 470 ASP D 540 CG OD1 OD2 REMARK 470 LYS D 547 CD CE NZ REMARK 470 SER D 552 OG REMARK 470 SER D 560 OG REMARK 470 GLN D 561 CG CD OE1 NE2 REMARK 470 LYS D 562 CE NZ REMARK 470 ASP D 566 CG OD1 OD2 REMARK 470 LYS D 597 CD CE NZ REMARK 470 SER D 609 OG REMARK 470 LYS D 619 CG CD CE NZ REMARK 470 LYS D 666 CG CD CE NZ REMARK 470 GLN D 669 CG CD OE1 NE2 REMARK 470 GLU D 678 CG CD OE1 OE2 REMARK 470 LYS D 689 CG CD CE NZ REMARK 470 LYS D 708 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 44 O GLY B 351 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 27 15.33 38.32 REMARK 500 GLU A 46 -30.45 -37.64 REMARK 500 GLU A 55 96.27 -59.58 REMARK 500 ARG A 76 -31.56 -38.65 REMARK 500 TYR A 79 68.08 31.16 REMARK 500 PRO A 81 -167.15 -59.09 REMARK 500 THR A 90 137.28 168.86 REMARK 500 LEU A 99 126.04 -20.92 REMARK 500 ARG A 100 -36.40 66.60 REMARK 500 PRO A 102 141.86 -31.42 REMARK 500 PRO A 115 64.92 -61.09 REMARK 500 ASN A 124 -36.64 67.27 REMARK 500 VAL A 132 -176.78 -66.76 REMARK 500 SER A 133 107.45 149.59 REMARK 500 PHE A 137 106.80 -53.44 REMARK 500 GLU A 141 -14.94 -44.46 REMARK 500 LEU A 151 111.32 -160.69 REMARK 500 PRO A 155 150.41 -38.03 REMARK 500 SER A 156 -142.97 -154.80 REMARK 500 THR A 157 -20.38 -152.05 REMARK 500 TRP A 168 47.18 -74.94 REMARK 500 PRO A 173 153.31 -49.47 REMARK 500 TRP A 178 138.13 -174.43 REMARK 500 ASN B 219 71.46 51.30 REMARK 500 ASN B 233 -61.35 67.15 REMARK 500 GLN B 234 -17.51 -166.93 REMARK 500 PHE B 240 123.80 -171.57 REMARK 500 ASP B 243 -16.89 -41.98 REMARK 500 TYR B 260 -70.28 -62.01 REMARK 500 GLN B 264 72.14 -109.09 REMARK 500 LYS B 265 -46.13 -26.80 REMARK 500 ASP B 266 -89.43 -43.11 REMARK 500 PHE B 267 -22.80 -36.72 REMARK 500 ASP B 276 -70.64 -102.14 REMARK 500 TYR B 278 -60.21 -123.29 REMARK 500 GLU B 287 -62.66 -19.06 REMARK 500 THR B 290 -71.65 -129.10 REMARK 500 PRO B 297 -134.22 -63.22 REMARK 500 LYS B 298 107.96 165.40 REMARK 500 TYR B 323 138.01 -171.22 REMARK 500 PRO B 324 -175.84 -69.82 REMARK 500 ASN B 334 -45.65 59.62 REMARK 500 SER B 335 25.57 -169.04 REMARK 500 GLU B 338 91.72 -62.15 REMARK 500 ALA B 340 135.26 -174.94 REMARK 500 VAL B 370 102.84 -161.11 REMARK 500 PRO B 378 0.05 -47.23 REMARK 500 VAL B 380 106.71 -160.67 REMARK 500 LYS D 504 65.96 60.16 REMARK 500 ASP D 505 125.58 -36.64 REMARK 500 ASP D 526 79.37 60.78 REMARK 500 THR D 533 -141.78 -120.94 REMARK 500 THR D 534 -84.33 -103.88 REMARK 500 THR D 536 -166.36 -101.15 REMARK 500 LEU D 537 108.20 175.02 REMARK 500 THR D 541 36.54 -74.44 REMARK 500 TYR D 544 -65.21 -124.83 REMARK 500 ASP D 548 9.03 83.19 REMARK 500 TYR D 550 -170.87 -175.07 REMARK 500 SER D 560 -8.06 -58.14 REMARK 500 ARG D 565 154.36 -25.99 REMARK 500 ASP D 566 -11.14 67.33 REMARK 500 PHE D 572 85.13 -160.23 REMARK 500 ASN D 579 39.84 36.39 REMARK 500 SER D 580 55.41 -104.93 REMARK 500 HIS D 581 -115.62 71.49 REMARK 500 SER D 609 98.19 -52.57 REMARK 500 LEU D 616 47.59 -104.33 REMARK 500 ASN D 618 42.29 35.53 REMARK 500 ILE D 646 -9.94 -56.05 REMARK 500 TYR D 653 120.42 -20.18 REMARK 500 ASP D 671 129.29 -37.12 REMARK 500 ASN D 677 -148.72 57.38 REMARK 500 ASP D 690 -4.50 -51.51 REMARK 500 ASN D 691 24.00 41.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 709 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 281 ND1 REMARK 620 2 HIS D 667 NE2 114.8 REMARK 620 3 ASP D 703 OD2 114.2 102.4 REMARK 620 4 HIS D 701 NE2 98.3 132.1 93.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D 709 DBREF 1HQR A 1 181 UNP P01903 2DRA_HUMAN 26 206 DBREF 1HQR B 201 390 UNP Q29703 Q29703_HUMAN 30 219 DBREF 1HQR C 406 418 UNP P02686 MBP_HUMAN 114 126 DBREF 1HQR D 501 708 UNP P13380 SPEC_STRPY 28 235 SEQRES 1 A 181 ILE LYS GLU GLU HIS VAL ILE ILE GLN ALA GLU PHE TYR SEQRES 2 A 181 LEU ASN PRO ASP GLN SER GLY GLU PHE MET PHE ASP PHE SEQRES 3 A 181 ASP GLY ASP GLU ILE PHE HIS VAL ASP MET ALA LYS LYS SEQRES 4 A 181 GLU THR VAL TRP ARG LEU GLU GLU PHE GLY ARG PHE ALA SEQRES 5 A 181 SER PHE GLU ALA GLN GLY ALA LEU ALA ASN ILE ALA VAL SEQRES 6 A 181 ASP LYS ALA ASN LEU GLU ILE MET THR LYS ARG SER ASN SEQRES 7 A 181 TYR THR PRO ILE THR ASN VAL PRO PRO GLU VAL THR VAL SEQRES 8 A 181 LEU THR ASN SER PRO VAL GLU LEU ARG GLU PRO ASN VAL SEQRES 9 A 181 LEU ILE CYS PHE ILE ASP LYS PHE THR PRO PRO VAL VAL SEQRES 10 A 181 ASN VAL THR TRP LEU ARG ASN GLY LYS PRO VAL THR THR SEQRES 11 A 181 GLY VAL SER GLU THR VAL PHE LEU PRO ARG GLU ASP HIS SEQRES 12 A 181 LEU PHE ARG LYS PHE HIS TYR LEU PRO PHE LEU PRO SER SEQRES 13 A 181 THR GLU ASP VAL TYR ASP CYS ARG VAL GLU HIS TRP GLY SEQRES 14 A 181 LEU ASP GLU PRO LEU LEU LYS HIS TRP GLU PHE ASP SEQRES 1 B 190 GLY ASP THR ARG PRO ARG PHE LEU GLN GLN ASP LYS TYR SEQRES 2 B 190 GLU CYS HIS PHE PHE ASN GLY THR GLU ARG VAL ARG PHE SEQRES 3 B 190 LEU HIS ARG ASP ILE TYR ASN GLN GLU GLU ASP LEU ARG SEQRES 4 B 190 PHE ASP SER ASP VAL GLY GLU TYR ARG ALA VAL THR GLU SEQRES 5 B 190 LEU GLY ARG PRO ASP ALA GLU TYR TRP ASN SER GLN LYS SEQRES 6 B 190 ASP PHE LEU GLU ASP ARG ARG ALA ALA VAL ASP THR TYR SEQRES 7 B 190 CYS ARG HIS ASN TYR GLY VAL GLY GLU SER PHE THR VAL SEQRES 8 B 190 GLN ARG ARG VAL GLU PRO LYS VAL THR VAL TYR PRO ALA SEQRES 9 B 190 ARG THR GLN THR LEU GLN HIS HIS ASN LEU LEU VAL CYS SEQRES 10 B 190 SER VAL ASN GLY PHE TYR PRO GLY SER ILE GLU VAL ARG SEQRES 11 B 190 TRP PHE ARG ASN SER GLN GLU GLU LYS ALA GLY VAL VAL SEQRES 12 B 190 SER THR GLY LEU ILE GLN ASN GLY ASP TRP THR PHE GLN SEQRES 13 B 190 THR LEU VAL MET LEU GLU THR VAL PRO ARG SER GLY GLU SEQRES 14 B 190 VAL TYR THR CYS GLN VAL GLU HIS PRO SER VAL THR SER SEQRES 15 B 190 PRO LEU THR VAL GLU TRP ARG ALA SEQRES 1 C 13 VAL HIS PHE PHE LYS ASN ILE VAL THR PRO ARG THR PRO SEQRES 1 D 208 ASP SER LYS LYS ASP ILE SER ASN VAL LYS SER ASP LEU SEQRES 2 D 208 LEU TYR ALA TYR THR ILE THR PRO TYR ASP TYR LYS ASP SEQRES 3 D 208 CYS ARG VAL ASN PHE SER THR THR HIS THR LEU ASN ILE SEQRES 4 D 208 ASP THR GLN LYS TYR ARG GLY LYS ASP TYR TYR ILE SER SEQRES 5 D 208 SER GLU MET SER TYR GLU ALA SER GLN LYS PHE LYS ARG SEQRES 6 D 208 ASP ASP HIS VAL ASP VAL PHE GLY LEU PHE TYR ILE LEU SEQRES 7 D 208 ASN SER HIS THR GLY GLU TYR ILE TYR GLY GLY ILE THR SEQRES 8 D 208 PRO ALA GLN ASN ASN LYS VAL ASN HIS LYS LEU LEU GLY SEQRES 9 D 208 ASN LEU PHE ILE SER GLY GLU SER GLN GLN ASN LEU ASN SEQRES 10 D 208 ASN LYS ILE ILE LEU GLU LYS ASP ILE VAL THR PHE GLN SEQRES 11 D 208 GLU ILE ASP PHE LYS ILE ARG LYS TYR LEU MET ASP ASN SEQRES 12 D 208 TYR LYS ILE TYR ASP ALA THR SER PRO TYR VAL SER GLY SEQRES 13 D 208 ARG ILE GLU ILE GLY THR LYS ASP GLY LYS HIS GLU GLN SEQRES 14 D 208 ILE ASP LEU PHE ASP SER PRO ASN GLU GLY THR ARG SER SEQRES 15 D 208 ASP ILE PHE ALA LYS TYR LYS ASP ASN ARG ILE ILE ASN SEQRES 16 D 208 MET LYS ASN PHE SER HIS PHE ASP ILE TYR LEU GLU LYS HET ZN D 709 1 HETNAM ZN ZINC ION FORMUL 5 ZN ZN 2+ HELIX 1 1 GLU A 47 PHE A 51 5 5 HELIX 2 2 GLU A 55 SER A 77 1 23 HELIX 3 3 THR B 251 LEU B 253 5 3 HELIX 4 4 GLY B 254 ASN B 262 1 9 HELIX 5 5 GLN B 264 ALA B 273 1 10 HELIX 6 6 ALA B 273 TYR B 278 1 6 HELIX 7 7 TYR B 278 GLU B 287 1 10 HELIX 8 8 SER B 288 THR B 290 5 3 HELIX 9 9 ASP D 505 THR D 518 1 14 HELIX 10 10 SER D 556 GLN D 561 1 6 HELIX 11 11 PHE D 629 LYS D 645 1 17 HELIX 12 12 THR D 680 PHE D 685 1 6 HELIX 13 13 ALA D 686 ASN D 691 5 6 SHEET 1 A 8 GLU A 40 TRP A 43 0 SHEET 2 A 8 ASP A 29 ASP A 35 -1 O HIS A 33 N VAL A 42 SHEET 3 A 8 SER A 19 PHE A 26 -1 O PHE A 22 N VAL A 34 SHEET 4 A 8 HIS A 5 ASN A 15 -1 O ILE A 8 N ASP A 25 SHEET 5 A 8 PHE B 207 PHE B 218 -1 N PHE B 207 O ASN A 15 SHEET 6 A 8 ARG B 223 TYR B 232 -1 N ARG B 223 O PHE B 218 SHEET 7 A 8 GLU B 235 ASP B 241 -1 N GLU B 235 O TYR B 232 SHEET 8 A 8 TYR B 247 ALA B 249 -1 O ARG B 248 N ARG B 239 SHEET 1 B 4 VAL A 91 THR A 93 0 SHEET 2 B 4 ASN A 103 PHE A 112 -1 N ILE A 106 O LEU A 92 SHEET 3 B 4 PHE A 145 PHE A 153 -1 N PHE A 145 O PHE A 112 SHEET 4 B 4 LEU A 138 PRO A 139 -1 N LEU A 138 O ARG A 146 SHEET 1 C 4 LYS A 126 VAL A 128 0 SHEET 2 C 4 ASN A 118 ARG A 123 -1 O TRP A 121 N VAL A 128 SHEET 3 C 4 TYR A 161 GLU A 166 -1 O ASP A 162 N LEU A 122 SHEET 4 C 4 HIS A 177 TRP A 178 -1 O TRP A 178 N TYR A 161 SHEET 1 D 4 VAL B 299 TYR B 302 0 SHEET 2 D 4 ASN B 313 PHE B 322 -1 N VAL B 316 O TYR B 302 SHEET 3 D 4 PHE B 355 THR B 363 -1 N PHE B 355 O PHE B 322 SHEET 4 D 4 VAL B 342 SER B 344 -1 O VAL B 343 N MET B 360 SHEET 1 E 4 VAL B 299 TYR B 302 0 SHEET 2 E 4 ASN B 313 PHE B 322 -1 N VAL B 316 O TYR B 302 SHEET 3 E 4 PHE B 355 THR B 363 -1 N PHE B 355 O PHE B 322 SHEET 4 E 4 ILE B 348 GLN B 349 -1 N ILE B 348 O GLN B 356 SHEET 1 F 4 GLN B 336 GLU B 337 0 SHEET 2 F 4 GLU B 328 ARG B 333 -1 N ARG B 333 O GLN B 336 SHEET 3 F 4 VAL B 370 HIS B 377 -1 O THR B 372 N PHE B 332 SHEET 4 F 4 VAL B 380 ARG B 389 -1 N VAL B 380 O HIS B 377 SHEET 1 G 6 TYR D 585 TYR D 587 0 SHEET 2 G 6 ILE D 551 GLU D 554 1 O SER D 552 N ILE D 586 SHEET 3 G 6 ASN D 538 ASP D 540 -1 N ILE D 539 O ILE D 551 SHEET 4 G 6 CYS D 527 VAL D 529 -1 O ARG D 528 N ASP D 540 SHEET 5 G 6 HIS D 568 VAL D 571 -1 O VAL D 569 N CYS D 527 SHEET 6 G 6 ILE D 590 PRO D 592 -1 O THR D 591 N ASP D 570 SHEET 1 H 2 HIS D 600 LYS D 601 0 SHEET 2 H 2 ILE D 621 LEU D 622 -1 O LEU D 622 N HIS D 600 SHEET 1 I 3 GLY D 604 SER D 609 0 SHEET 2 I 3 PHE D 699 GLU D 707 1 O PHE D 702 N ASN D 605 SHEET 3 I 3 SER D 655 THR D 662 -1 O SER D 655 N GLU D 707 SHEET 1 J 2 ILE D 626 THR D 628 0 SHEET 2 J 2 ILE D 693 ASN D 695 -1 O ILE D 694 N VAL D 627 SSBOND 1 CYS A 107 CYS A 163 1555 1555 2.03 SSBOND 2 CYS B 215 CYS B 279 1555 1555 2.03 SSBOND 3 CYS B 317 CYS B 373 1555 1555 2.03 LINK ZN ZN D 709 ND1 HIS B 281 1555 1555 1.93 LINK ZN ZN D 709 NE2 HIS D 667 1555 1555 2.12 LINK ZN ZN D 709 OD2 ASP D 703 1555 1555 1.92 LINK ZN ZN D 709 NE2 HIS D 701 1555 1555 2.14 CISPEP 1 ASN A 15 PRO A 16 0 -0.10 CISPEP 2 TYR B 323 PRO B 324 0 0.56 SITE 1 AC1 4 HIS B 281 HIS D 667 HIS D 701 ASP D 703 CRYST1 61.827 111.950 216.617 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016174 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008933 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004616 0.00000