data_1HT7 # _entry.id 1HT7 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1HT7 pdb_00001ht7 10.2210/pdb1ht7/pdb RCSB RCSB012572 ? ? WWPDB D_1000012572 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2001-05-02 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-02-23 5 'Structure model' 1 4 2024-05-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 5 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list 5 4 'Structure model' struct_conn 6 5 'Structure model' chem_comp_atom 7 5 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1HT7 _pdbx_database_status.recvd_initial_deposition_date 2000-12-29 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1HT4 _pdbx_database_related.details ;Structure of a DNA duplex containing a bistrand abasic site lesion staggered in a 3'-orientation ; _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Lin, Z.' 1 'de los Santos, C.' 2 # _citation.id primary _citation.title 'NMR characterization of clustered bistrand abasic site lesions: effect of orientation on their solution structure.' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 308 _citation.page_first 341 _citation.page_last 352 _citation.year 2001 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 11327771 _citation.pdbx_database_id_DOI 10.1006/jmbi.2001.4587 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Lin, Z.' 1 ? primary 'de los Santos, C.' 2 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*CP*GP*CP*AP*TP*GP*(3DR)P*GP*TP*AP*CP*GP*C)-3'" 3843.488 1 ? ? ? 'MODIFIED DNA DUPLEX CONTAINING CLUSTERED ABASIC SITES' 2 polymer syn "5'-D(*GP*CP*GP*TP*AP*(3DR)P*AP*CP*AP*TP*GP*CP*G)-3'" 3867.513 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no yes '(DC)(DG)(DC)(DA)(DT)(DG)(3DR)(DG)(DT)(DA)(DC)(DG)(DC)' CGCATGNGTACGC A ? 2 polydeoxyribonucleotide no yes '(DG)(DC)(DG)(DT)(DA)(3DR)(DA)(DC)(DA)(DT)(DG)(DC)(DG)' GCGTANACATGCG B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DC n 1 4 DA n 1 5 DT n 1 6 DG n 1 7 3DR n 1 8 DG n 1 9 DT n 1 10 DA n 1 11 DC n 1 12 DG n 1 13 DC n 2 1 DG n 2 2 DC n 2 3 DG n 2 4 DT n 2 5 DA n 2 6 3DR n 2 7 DA n 2 8 DC n 2 9 DA n 2 10 DT n 2 11 DG n 2 12 DC n 2 13 DG n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample ? ? ? ? ? 'Randomly designed sequence containing stable abasic sites (3DR).' 2 1 sample ? ? ? ? ? 'Randomly designed sequence containing stable abasic sites (3DR).' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 3DR 'DNA linking' . "1',2'-DIDEOXYRIBOFURANOSE-5'-PHOSPHATE" 'ABASIC DIDEOXYRIBOSE' 'C5 H11 O6 P' 198.111 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DC 3 3 3 DC C A . n A 1 4 DA 4 4 4 DA A A . n A 1 5 DT 5 5 5 DT T A . n A 1 6 DG 6 6 6 DG G A . n A 1 7 3DR 7 7 7 3DR FUR A . n A 1 8 DG 8 8 8 DG G A . n A 1 9 DT 9 9 9 DT T A . n A 1 10 DA 10 10 10 DA A A . n A 1 11 DC 11 11 11 DC C A . n A 1 12 DG 12 12 12 DG G A . n A 1 13 DC 13 13 13 DC C A . n B 2 1 DG 1 14 14 DG G B . n B 2 2 DC 2 15 15 DC C B . n B 2 3 DG 3 16 16 DG G B . n B 2 4 DT 4 17 17 DT T B . n B 2 5 DA 5 18 18 DA B B . n B 2 6 3DR 6 19 19 3DR FUR B . n B 2 7 DA 7 20 20 DA B B . n B 2 8 DC 8 21 21 DC C B . n B 2 9 DA 9 22 22 DA B B . n B 2 10 DT 10 23 23 DT T B . n B 2 11 DG 11 24 24 DG G B . n B 2 12 DC 12 25 25 DC C B . n B 2 13 DG 13 26 26 DG G B . n # _cell.entry_id 1HT7 _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1HT7 _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _exptl.entry_id 1HT7 _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _database_PDB_matrix.entry_id 1HT7 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1HT7 _struct.title ;STRUCTURE OF A DNA DUPLEX CONTAINING A BISTRAND ABASIC SITE LESION STAGGERED IN A 5'-ORIENTATION. ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1HT7 _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'double helix, abasic sites, clustered damage, extruded residues., DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_ref.id _struct_ref.entity_id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 1 PDB 1HT7 1HT7 ? ? ? 2 2 PDB 1HT7 1HT7 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1HT7 A 1 ? 13 ? 1HT7 1 ? 13 ? 1 13 2 2 1HT7 B 1 ? 13 ? 1HT7 14 ? 26 ? 14 26 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DG 6 "O3'" ? ? ? 1_555 A 3DR 7 P ? ? A DG 6 A 3DR 7 1_555 ? ? ? ? ? ? ? 1.616 ? ? covale2 covale both ? A 3DR 7 "O3'" ? ? ? 1_555 A DG 8 P ? ? A 3DR 7 A DG 8 1_555 ? ? ? ? ? ? ? 1.617 ? ? covale3 covale both ? B DA 5 "O3'" ? ? ? 1_555 B 3DR 6 P ? ? B DA 18 B 3DR 19 1_555 ? ? ? ? ? ? ? 1.619 ? ? covale4 covale both ? B 3DR 6 "O3'" ? ? ? 1_555 B DA 7 P ? ? B 3DR 19 B DA 20 1_555 ? ? ? ? ? ? ? 1.616 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 13 N1 ? ? A DC 1 B DG 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 13 O6 ? ? A DC 1 B DG 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 13 N2 ? ? A DC 1 B DG 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 12 N3 ? ? A DG 2 B DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 12 O2 ? ? A DG 2 B DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 12 N4 ? ? A DG 2 B DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 11 N1 ? ? A DC 3 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 11 O6 ? ? A DC 3 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 11 N2 ? ? A DC 3 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DA 4 N1 ? ? ? 1_555 B DT 10 N3 ? ? A DA 4 B DT 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DA 4 N6 ? ? ? 1_555 B DT 10 O4 ? ? A DA 4 B DT 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DT 5 N3 ? ? ? 1_555 B DA 9 N1 ? ? A DT 5 B DA 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DT 5 O4 ? ? ? 1_555 B DA 9 N6 ? ? A DT 5 B DA 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B DC 8 N3 ? ? A DG 6 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B DC 8 O2 ? ? A DG 6 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B DC 8 N4 ? ? A DG 6 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 8 N2 ? ? ? 1_555 B DA 5 N1 ? ? A DG 8 B DA 18 1_555 ? ? ? ? ? ? 'DG-DA MISPAIR' ? ? ? hydrog18 hydrog ? ? A DT 9 N3 ? ? ? 1_555 B DA 5 N1 ? ? A DT 9 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 9 O4 ? ? ? 1_555 B DA 5 N6 ? ? A DT 9 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DA 10 N1 ? ? ? 1_555 B DT 4 N3 ? ? A DA 10 B DT 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DA 10 N6 ? ? ? 1_555 B DT 4 O4 ? ? A DA 10 B DT 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 3 N1 ? ? A DC 11 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 3 O6 ? ? A DC 11 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 3 N2 ? ? A DC 11 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DC 2 N3 ? ? A DG 12 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DC 2 O2 ? ? A DG 12 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B DC 2 N4 ? ? A DG 12 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DC 13 N3 ? ? ? 1_555 B DG 1 N1 ? ? A DC 13 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DC 13 N4 ? ? ? 1_555 B DG 1 O6 ? ? A DC 13 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DC 13 O2 ? ? ? 1_555 B DG 1 N2 ? ? A DC 13 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C4 A DC 1 ? ? N4 A DC 1 ? ? 1.429 1.335 0.094 0.009 N 2 1 C2 A DG 2 ? ? N2 A DG 2 ? ? 1.424 1.341 0.083 0.010 N 3 1 C4 A DC 3 ? ? N4 A DC 3 ? ? 1.428 1.335 0.093 0.009 N 4 1 C6 A DA 4 ? ? N6 A DA 4 ? ? 1.428 1.335 0.093 0.008 N 5 1 C5 A DT 5 ? ? C7 A DT 5 ? ? 1.533 1.496 0.037 0.006 N 6 1 C2 A DG 6 ? ? N2 A DG 6 ? ? 1.427 1.341 0.086 0.010 N 7 1 C2 A DG 8 ? ? N2 A DG 8 ? ? 1.419 1.341 0.078 0.010 N 8 1 C5 A DT 9 ? ? C7 A DT 9 ? ? 1.532 1.496 0.036 0.006 N 9 1 C6 A DA 10 ? ? N6 A DA 10 ? ? 1.427 1.335 0.092 0.008 N 10 1 C4 A DC 11 ? ? N4 A DC 11 ? ? 1.431 1.335 0.096 0.009 N 11 1 C2 A DG 12 ? ? N2 A DG 12 ? ? 1.425 1.341 0.084 0.010 N 12 1 C4 A DC 13 ? ? N4 A DC 13 ? ? 1.428 1.335 0.093 0.009 N 13 1 C2 B DG 14 ? ? N2 B DG 14 ? ? 1.422 1.341 0.081 0.010 N 14 1 C4 B DC 15 ? ? N4 B DC 15 ? ? 1.428 1.335 0.093 0.009 N 15 1 C2 B DG 16 ? ? N2 B DG 16 ? ? 1.421 1.341 0.080 0.010 N 16 1 C6 B DA 18 ? ? N6 B DA 18 ? ? 1.431 1.335 0.096 0.008 N 17 1 C6 B DA 20 ? ? N6 B DA 20 ? ? 1.429 1.335 0.094 0.008 N 18 1 C4 B DC 21 ? ? N4 B DC 21 ? ? 1.429 1.335 0.094 0.009 N 19 1 C6 B DA 22 ? ? N6 B DA 22 ? ? 1.427 1.335 0.092 0.008 N 20 1 C5 B DT 23 ? ? C7 B DT 23 ? ? 1.534 1.496 0.038 0.006 N 21 1 C2 B DG 24 ? ? N2 B DG 24 ? ? 1.425 1.341 0.084 0.010 N 22 1 C4 B DC 25 ? ? N4 B DC 25 ? ? 1.428 1.335 0.093 0.009 N 23 1 C2 B DG 26 ? ? N2 B DG 26 ? ? 1.426 1.341 0.085 0.010 N 24 2 C4 A DC 1 ? ? N4 A DC 1 ? ? 1.430 1.335 0.095 0.009 N 25 2 C2 A DG 2 ? ? N2 A DG 2 ? ? 1.422 1.341 0.081 0.010 N 26 2 C4 A DC 3 ? ? N4 A DC 3 ? ? 1.428 1.335 0.093 0.009 N 27 2 C6 A DA 4 ? ? N6 A DA 4 ? ? 1.429 1.335 0.094 0.008 N 28 2 C5 A DT 5 ? ? C7 A DT 5 ? ? 1.532 1.496 0.036 0.006 N 29 2 C2 A DG 6 ? ? N2 A DG 6 ? ? 1.426 1.341 0.085 0.010 N 30 2 C2 A DG 8 ? ? N2 A DG 8 ? ? 1.419 1.341 0.078 0.010 N 31 2 C5 A DT 9 ? ? C7 A DT 9 ? ? 1.534 1.496 0.038 0.006 N 32 2 C6 A DA 10 ? ? N6 A DA 10 ? ? 1.427 1.335 0.092 0.008 N 33 2 C4 A DC 11 ? ? N4 A DC 11 ? ? 1.433 1.335 0.098 0.009 N 34 2 C2 A DG 12 ? ? N2 A DG 12 ? ? 1.424 1.341 0.083 0.010 N 35 2 C4 A DC 13 ? ? N4 A DC 13 ? ? 1.428 1.335 0.093 0.009 N 36 2 C2 B DG 14 ? ? N2 B DG 14 ? ? 1.420 1.341 0.079 0.010 N 37 2 C4 B DC 15 ? ? N4 B DC 15 ? ? 1.427 1.335 0.092 0.009 N 38 2 C2 B DG 16 ? ? N2 B DG 16 ? ? 1.421 1.341 0.080 0.010 N 39 2 C6 B DA 18 ? ? N6 B DA 18 ? ? 1.430 1.335 0.095 0.008 N 40 2 C6 B DA 20 ? ? N6 B DA 20 ? ? 1.431 1.335 0.096 0.008 N 41 2 C4 B DC 21 ? ? N4 B DC 21 ? ? 1.430 1.335 0.095 0.009 N 42 2 C6 B DA 22 ? ? N6 B DA 22 ? ? 1.430 1.335 0.095 0.008 N 43 2 C5 B DT 23 ? ? C7 B DT 23 ? ? 1.534 1.496 0.038 0.006 N 44 2 C2 B DG 24 ? ? N2 B DG 24 ? ? 1.425 1.341 0.084 0.010 N 45 2 C4 B DC 25 ? ? N4 B DC 25 ? ? 1.430 1.335 0.095 0.009 N 46 2 C2 B DG 26 ? ? N2 B DG 26 ? ? 1.425 1.341 0.084 0.010 N 47 3 C4 A DC 1 ? ? N4 A DC 1 ? ? 1.428 1.335 0.093 0.009 N 48 3 C2 A DG 2 ? ? N2 A DG 2 ? ? 1.424 1.341 0.083 0.010 N 49 3 C4 A DC 3 ? ? N4 A DC 3 ? ? 1.429 1.335 0.094 0.009 N 50 3 C6 A DA 4 ? ? N6 A DA 4 ? ? 1.428 1.335 0.093 0.008 N 51 3 C2 A DG 6 ? ? N2 A DG 6 ? ? 1.427 1.341 0.086 0.010 N 52 3 C2 A DG 8 ? ? N2 A DG 8 ? ? 1.409 1.341 0.068 0.010 N 53 3 C5 A DT 9 ? ? C7 A DT 9 ? ? 1.533 1.496 0.037 0.006 N 54 3 C6 A DA 10 ? ? N6 A DA 10 ? ? 1.427 1.335 0.092 0.008 N 55 3 C4 A DC 11 ? ? N4 A DC 11 ? ? 1.431 1.335 0.096 0.009 N 56 3 C2 A DG 12 ? ? N2 A DG 12 ? ? 1.424 1.341 0.083 0.010 N 57 3 C4 A DC 13 ? ? N4 A DC 13 ? ? 1.429 1.335 0.094 0.009 N 58 3 C2 B DG 14 ? ? N2 B DG 14 ? ? 1.419 1.341 0.078 0.010 N 59 3 C4 B DC 15 ? ? N4 B DC 15 ? ? 1.428 1.335 0.093 0.009 N 60 3 C2 B DG 16 ? ? N2 B DG 16 ? ? 1.421 1.341 0.080 0.010 N 61 3 C5 B DT 17 ? ? C7 B DT 17 ? ? 1.533 1.496 0.037 0.006 N 62 3 C6 B DA 18 ? ? N6 B DA 18 ? ? 1.429 1.335 0.094 0.008 N 63 3 C6 B DA 20 ? ? N6 B DA 20 ? ? 1.428 1.335 0.093 0.008 N 64 3 C4 B DC 21 ? ? N4 B DC 21 ? ? 1.429 1.335 0.094 0.009 N 65 3 C6 B DA 22 ? ? N6 B DA 22 ? ? 1.429 1.335 0.094 0.008 N 66 3 C5 B DT 23 ? ? C7 B DT 23 ? ? 1.534 1.496 0.038 0.006 N 67 3 C2 B DG 24 ? ? N2 B DG 24 ? ? 1.425 1.341 0.084 0.010 N 68 3 C4 B DC 25 ? ? N4 B DC 25 ? ? 1.428 1.335 0.093 0.009 N 69 3 C2 B DG 26 ? ? N2 B DG 26 ? ? 1.424 1.341 0.083 0.010 N 70 4 C4 A DC 1 ? ? N4 A DC 1 ? ? 1.431 1.335 0.096 0.009 N 71 4 C2 A DG 2 ? ? N2 A DG 2 ? ? 1.424 1.341 0.083 0.010 N 72 4 C4 A DC 3 ? ? N4 A DC 3 ? ? 1.428 1.335 0.093 0.009 N 73 4 C6 A DA 4 ? ? N6 A DA 4 ? ? 1.428 1.335 0.093 0.008 N 74 4 C5 A DT 5 ? ? C7 A DT 5 ? ? 1.533 1.496 0.037 0.006 N 75 4 C2 A DG 6 ? ? N2 A DG 6 ? ? 1.426 1.341 0.085 0.010 N 76 4 C2 A DG 8 ? ? N2 A DG 8 ? ? 1.417 1.341 0.076 0.010 N 77 4 C5 A DT 9 ? ? C7 A DT 9 ? ? 1.534 1.496 0.038 0.006 N 78 4 C6 A DA 10 ? ? N6 A DA 10 ? ? 1.425 1.335 0.090 0.008 N 79 4 C4 A DC 11 ? ? N4 A DC 11 ? ? 1.431 1.335 0.096 0.009 N 80 4 C2 A DG 12 ? ? N2 A DG 12 ? ? 1.425 1.341 0.084 0.010 N 81 4 C4 A DC 13 ? ? N4 A DC 13 ? ? 1.429 1.335 0.094 0.009 N 82 4 C2 B DG 14 ? ? N2 B DG 14 ? ? 1.420 1.341 0.079 0.010 N 83 4 C4 B DC 15 ? ? N4 B DC 15 ? ? 1.428 1.335 0.093 0.009 N 84 4 C2 B DG 16 ? ? N2 B DG 16 ? ? 1.421 1.341 0.080 0.010 N 85 4 C6 B DA 18 ? ? N6 B DA 18 ? ? 1.431 1.335 0.096 0.008 N 86 4 C6 B DA 20 ? ? N6 B DA 20 ? ? 1.430 1.335 0.095 0.008 N 87 4 C4 B DC 21 ? ? N4 B DC 21 ? ? 1.428 1.335 0.093 0.009 N 88 4 C6 B DA 22 ? ? N6 B DA 22 ? ? 1.427 1.335 0.092 0.008 N 89 4 C2 B DG 24 ? ? N2 B DG 24 ? ? 1.425 1.341 0.084 0.010 N 90 4 C4 B DC 25 ? ? N4 B DC 25 ? ? 1.429 1.335 0.094 0.009 N 91 4 C2 B DG 26 ? ? N2 B DG 26 ? ? 1.423 1.341 0.082 0.010 N 92 5 C4 A DC 1 ? ? N4 A DC 1 ? ? 1.430 1.335 0.095 0.009 N 93 5 C2 A DG 2 ? ? N2 A DG 2 ? ? 1.424 1.341 0.083 0.010 N 94 5 C4 A DC 3 ? ? N4 A DC 3 ? ? 1.428 1.335 0.093 0.009 N 95 5 C6 A DA 4 ? ? N6 A DA 4 ? ? 1.427 1.335 0.092 0.008 N 96 5 C5 A DT 5 ? ? C7 A DT 5 ? ? 1.532 1.496 0.036 0.006 N 97 5 C2 A DG 6 ? ? N2 A DG 6 ? ? 1.427 1.341 0.086 0.010 N 98 5 C2 A DG 8 ? ? N2 A DG 8 ? ? 1.410 1.341 0.069 0.010 N 99 5 C5 A DT 9 ? ? C7 A DT 9 ? ? 1.533 1.496 0.037 0.006 N 100 5 C6 A DA 10 ? ? N6 A DA 10 ? ? 1.426 1.335 0.091 0.008 N 101 5 C4 A DC 11 ? ? N4 A DC 11 ? ? 1.430 1.335 0.095 0.009 N 102 5 C2 A DG 12 ? ? N2 A DG 12 ? ? 1.423 1.341 0.082 0.010 N 103 5 C4 A DC 13 ? ? N4 A DC 13 ? ? 1.428 1.335 0.093 0.009 N 104 5 C2 B DG 14 ? ? N2 B DG 14 ? ? 1.420 1.341 0.079 0.010 N 105 5 C4 B DC 15 ? ? N4 B DC 15 ? ? 1.428 1.335 0.093 0.009 N 106 5 C2 B DG 16 ? ? N2 B DG 16 ? ? 1.421 1.341 0.080 0.010 N 107 5 C6 B DA 18 ? ? N6 B DA 18 ? ? 1.427 1.335 0.092 0.008 N 108 5 C6 B DA 20 ? ? N6 B DA 20 ? ? 1.430 1.335 0.095 0.008 N 109 5 C4 B DC 21 ? ? N4 B DC 21 ? ? 1.429 1.335 0.094 0.009 N 110 5 C6 B DA 22 ? ? N6 B DA 22 ? ? 1.428 1.335 0.093 0.008 N 111 5 C5 B DT 23 ? ? C7 B DT 23 ? ? 1.533 1.496 0.037 0.006 N 112 5 C2 B DG 24 ? ? N2 B DG 24 ? ? 1.426 1.341 0.085 0.010 N 113 5 C4 B DC 25 ? ? N4 B DC 25 ? ? 1.428 1.335 0.093 0.009 N 114 5 C2 B DG 26 ? ? N2 B DG 26 ? ? 1.425 1.341 0.084 0.010 N 115 6 C4 A DC 1 ? ? N4 A DC 1 ? ? 1.430 1.335 0.095 0.009 N 116 6 C2 A DG 2 ? ? N2 A DG 2 ? ? 1.424 1.341 0.083 0.010 N 117 6 C4 A DC 3 ? ? N4 A DC 3 ? ? 1.429 1.335 0.094 0.009 N 118 6 C6 A DA 4 ? ? N6 A DA 4 ? ? 1.428 1.335 0.093 0.008 N 119 6 C5 A DT 5 ? ? C7 A DT 5 ? ? 1.532 1.496 0.036 0.006 N 120 6 C2 A DG 6 ? ? N2 A DG 6 ? ? 1.427 1.341 0.086 0.010 N 121 6 C2 A DG 8 ? ? N2 A DG 8 ? ? 1.420 1.341 0.079 0.010 N 122 6 C5 A DT 9 ? ? C7 A DT 9 ? ? 1.535 1.496 0.039 0.006 N 123 6 C6 A DA 10 ? ? N6 A DA 10 ? ? 1.426 1.335 0.091 0.008 N 124 6 C4 A DC 11 ? ? N4 A DC 11 ? ? 1.432 1.335 0.097 0.009 N 125 6 C2 A DG 12 ? ? N2 A DG 12 ? ? 1.424 1.341 0.083 0.010 N 126 6 C4 A DC 13 ? ? N4 A DC 13 ? ? 1.429 1.335 0.094 0.009 N 127 6 C2 B DG 14 ? ? N2 B DG 14 ? ? 1.420 1.341 0.079 0.010 N 128 6 C4 B DC 15 ? ? N4 B DC 15 ? ? 1.428 1.335 0.093 0.009 N 129 6 C2 B DG 16 ? ? N2 B DG 16 ? ? 1.421 1.341 0.080 0.010 N 130 6 C6 B DA 18 ? ? N6 B DA 18 ? ? 1.429 1.335 0.094 0.008 N 131 6 C6 B DA 20 ? ? N6 B DA 20 ? ? 1.428 1.335 0.093 0.008 N 132 6 C4 B DC 21 ? ? N4 B DC 21 ? ? 1.426 1.335 0.091 0.009 N 133 6 C6 B DA 22 ? ? N6 B DA 22 ? ? 1.427 1.335 0.092 0.008 N 134 6 C5 B DT 23 ? ? C7 B DT 23 ? ? 1.533 1.496 0.037 0.006 N 135 6 C2 B DG 24 ? ? N2 B DG 24 ? ? 1.425 1.341 0.084 0.010 N 136 6 C4 B DC 25 ? ? N4 B DC 25 ? ? 1.428 1.335 0.093 0.009 N 137 6 C2 B DG 26 ? ? N2 B DG 26 ? ? 1.425 1.341 0.084 0.010 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? "C2'" A DG 2 ? ? 100.93 105.90 -4.97 0.80 N 2 1 N7 A DG 2 ? ? C8 A DG 2 ? ? N9 A DG 2 ? ? 116.23 113.10 3.13 0.50 N 3 1 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 110.54 108.30 2.24 0.30 N 4 1 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 111.44 108.30 3.14 0.30 N 5 1 "C3'" A DG 6 ? ? "C2'" A DG 6 ? ? "C1'" A DG 6 ? ? 95.93 102.40 -6.47 0.80 N 6 1 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 110.81 108.30 2.51 0.30 N 7 1 N7 A DG 6 ? ? C8 A DG 6 ? ? N9 A DG 6 ? ? 116.11 113.10 3.01 0.50 N 8 1 N7 A DG 8 ? ? C8 A DG 8 ? ? N9 A DG 8 ? ? 116.38 113.10 3.28 0.50 N 9 1 N7 A DA 10 ? ? C8 A DA 10 ? ? N9 A DA 10 ? ? 117.66 113.80 3.86 0.50 N 10 1 C8 A DA 10 ? ? N9 A DA 10 ? ? C4 A DA 10 ? ? 103.31 105.80 -2.49 0.40 N 11 1 "C4'" A DC 11 ? ? "C3'" A DC 11 ? ? "C2'" A DC 11 ? ? 96.32 102.20 -5.88 0.70 N 12 1 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 120.06 108.30 11.76 0.30 N 13 1 N7 A DG 12 ? ? C8 A DG 12 ? ? N9 A DG 12 ? ? 116.45 113.10 3.35 0.50 N 14 1 "O4'" A DC 13 ? ? "C1'" A DC 13 ? ? N1 A DC 13 ? ? 110.62 108.30 2.32 0.30 N 15 1 N7 B DG 14 ? ? C8 B DG 14 ? ? N9 B DG 14 ? ? 116.45 113.10 3.35 0.50 N 16 1 "O4'" B DC 15 ? ? "C1'" B DC 15 ? ? N1 B DC 15 ? ? 112.52 108.30 4.22 0.30 N 17 1 "O4'" B DA 20 ? ? "C1'" B DA 20 ? ? N9 B DA 20 ? ? 111.59 108.30 3.29 0.30 N 18 1 "O4'" B DT 23 ? ? "C1'" B DT 23 ? ? N1 B DT 23 ? ? 110.33 108.30 2.03 0.30 N 19 1 N7 B DG 24 ? ? C8 B DG 24 ? ? N9 B DG 24 ? ? 116.46 113.10 3.36 0.50 N 20 1 "O4'" B DC 25 ? ? "C1'" B DC 25 ? ? N1 B DC 25 ? ? 110.70 108.30 2.40 0.30 N 21 2 "C1'" A DG 2 ? ? "O4'" A DG 2 ? ? "C4'" A DG 2 ? ? 103.51 110.10 -6.59 1.00 N 22 2 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? "C2'" A DG 2 ? ? 100.88 105.90 -5.02 0.80 N 23 2 N7 A DG 2 ? ? C8 A DG 2 ? ? N9 A DG 2 ? ? 116.21 113.10 3.11 0.50 N 24 2 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 110.65 108.30 2.35 0.30 N 25 2 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 111.05 108.30 2.75 0.30 N 26 2 "C3'" A DG 6 ? ? "C2'" A DG 6 ? ? "C1'" A DG 6 ? ? 96.21 102.40 -6.19 0.80 N 27 2 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 112.10 108.30 3.80 0.30 N 28 2 N7 A DG 8 ? ? C8 A DG 8 ? ? N9 A DG 8 ? ? 116.34 113.10 3.24 0.50 N 29 2 N7 A DA 10 ? ? C8 A DA 10 ? ? N9 A DA 10 ? ? 117.76 113.80 3.96 0.50 N 30 2 C8 A DA 10 ? ? N9 A DA 10 ? ? C4 A DA 10 ? ? 103.24 105.80 -2.56 0.40 N 31 2 "C4'" A DC 11 ? ? "C3'" A DC 11 ? ? "C2'" A DC 11 ? ? 95.95 102.20 -6.25 0.70 N 32 2 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 120.10 108.30 11.80 0.30 N 33 2 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? N9 A DG 12 ? ? 110.58 108.30 2.28 0.30 N 34 2 N7 A DG 12 ? ? C8 A DG 12 ? ? N9 A DG 12 ? ? 116.33 113.10 3.23 0.50 N 35 2 "O4'" A DC 13 ? ? "C1'" A DC 13 ? ? N1 A DC 13 ? ? 116.53 108.30 8.23 0.30 N 36 2 N7 B DG 14 ? ? C8 B DG 14 ? ? N9 B DG 14 ? ? 116.30 113.10 3.20 0.50 N 37 2 "O4'" B DC 15 ? ? "C1'" B DC 15 ? ? N1 B DC 15 ? ? 113.00 108.30 4.70 0.30 N 38 2 "O4'" B DT 17 ? ? "C1'" B DT 17 ? ? N1 B DT 17 ? ? 110.27 108.30 1.97 0.30 N 39 2 "O4'" B DA 20 ? ? "C1'" B DA 20 ? ? N9 B DA 20 ? ? 110.98 108.30 2.68 0.30 N 40 2 "O4'" B DC 21 ? ? "C1'" B DC 21 ? ? "C2'" B DC 21 ? ? 101.05 105.90 -4.85 0.80 N 41 2 "O4'" B DC 21 ? ? "C1'" B DC 21 ? ? N1 B DC 21 ? ? 110.34 108.30 2.04 0.30 N 42 2 N7 B DG 24 ? ? C8 B DG 24 ? ? N9 B DG 24 ? ? 116.32 113.10 3.22 0.50 N 43 2 "O4'" B DG 26 ? ? "C1'" B DG 26 ? ? N9 B DG 26 ? ? 110.31 108.30 2.01 0.30 N 44 3 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 110.46 108.30 2.16 0.30 N 45 3 "C1'" A DG 2 ? ? "O4'" A DG 2 ? ? "C4'" A DG 2 ? ? 103.76 110.10 -6.34 1.00 N 46 3 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? "C2'" A DG 2 ? ? 100.70 105.90 -5.20 0.80 N 47 3 N7 A DG 2 ? ? C8 A DG 2 ? ? N9 A DG 2 ? ? 116.32 113.10 3.22 0.50 N 48 3 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 110.56 108.30 2.26 0.30 N 49 3 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 111.38 108.30 3.08 0.30 N 50 3 "C3'" A DG 6 ? ? "C2'" A DG 6 ? ? "C1'" A DG 6 ? ? 96.31 102.40 -6.09 0.80 N 51 3 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 112.64 108.30 4.34 0.30 N 52 3 N7 A DG 6 ? ? C8 A DG 6 ? ? N9 A DG 6 ? ? 116.16 113.10 3.06 0.50 N 53 3 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 111.22 108.30 2.92 0.30 N 54 3 N7 A DA 10 ? ? C8 A DA 10 ? ? N9 A DA 10 ? ? 117.70 113.80 3.90 0.50 N 55 3 C8 A DA 10 ? ? N9 A DA 10 ? ? C4 A DA 10 ? ? 103.34 105.80 -2.46 0.40 N 56 3 "C4'" A DC 11 ? ? "C3'" A DC 11 ? ? "C2'" A DC 11 ? ? 96.64 102.20 -5.56 0.70 N 57 3 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 119.95 108.30 11.65 0.30 N 58 3 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? N9 A DG 12 ? ? 110.29 108.30 1.99 0.30 N 59 3 N7 A DG 12 ? ? C8 A DG 12 ? ? N9 A DG 12 ? ? 116.36 113.10 3.26 0.50 N 60 3 "O4'" A DC 13 ? ? "C1'" A DC 13 ? ? N1 A DC 13 ? ? 116.07 108.30 7.77 0.30 N 61 3 N7 B DG 14 ? ? C8 B DG 14 ? ? N9 B DG 14 ? ? 116.32 113.10 3.22 0.50 N 62 3 "O4'" B DC 15 ? ? "C1'" B DC 15 ? ? N1 B DC 15 ? ? 112.77 108.30 4.47 0.30 N 63 3 "O4'" B DT 17 ? ? "C1'" B DT 17 ? ? N1 B DT 17 ? ? 111.00 108.30 2.70 0.30 N 64 3 "O4'" B DA 20 ? ? "C1'" B DA 20 ? ? N9 B DA 20 ? ? 110.92 108.30 2.62 0.30 N 65 3 "O4'" B DT 23 ? ? "C1'" B DT 23 ? ? N1 B DT 23 ? ? 110.51 108.30 2.21 0.30 N 66 3 N7 B DG 24 ? ? C8 B DG 24 ? ? N9 B DG 24 ? ? 116.33 113.10 3.23 0.50 N 67 3 "O4'" B DC 25 ? ? "C1'" B DC 25 ? ? N1 B DC 25 ? ? 110.25 108.30 1.95 0.30 N 68 3 "O4'" B DG 26 ? ? "C1'" B DG 26 ? ? N9 B DG 26 ? ? 110.62 108.30 2.32 0.30 N 69 4 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? "C2'" A DG 2 ? ? 100.90 105.90 -5.00 0.80 N 70 4 N7 A DG 2 ? ? C8 A DG 2 ? ? N9 A DG 2 ? ? 116.26 113.10 3.16 0.50 N 71 4 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 110.56 108.30 2.26 0.30 N 72 4 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 110.93 108.30 2.63 0.30 N 73 4 "C3'" A DG 6 ? ? "C2'" A DG 6 ? ? "C1'" A DG 6 ? ? 96.66 102.40 -5.74 0.80 N 74 4 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 111.86 108.30 3.56 0.30 N 75 4 N7 A DG 6 ? ? C8 A DG 6 ? ? N9 A DG 6 ? ? 116.24 113.10 3.14 0.50 N 76 4 N7 A DG 8 ? ? C8 A DG 8 ? ? N9 A DG 8 ? ? 116.41 113.10 3.31 0.50 N 77 4 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 111.39 108.30 3.09 0.30 N 78 4 N7 A DA 10 ? ? C8 A DA 10 ? ? N9 A DA 10 ? ? 117.82 113.80 4.02 0.50 N 79 4 C8 A DA 10 ? ? N9 A DA 10 ? ? C4 A DA 10 ? ? 103.29 105.80 -2.51 0.40 N 80 4 "C4'" A DC 11 ? ? "C3'" A DC 11 ? ? "C2'" A DC 11 ? ? 96.11 102.20 -6.09 0.70 N 81 4 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 120.38 108.30 12.08 0.30 N 82 4 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? N9 A DG 12 ? ? 110.30 108.30 2.00 0.30 N 83 4 N7 A DG 12 ? ? C8 A DG 12 ? ? N9 A DG 12 ? ? 116.44 113.10 3.34 0.50 N 84 4 N7 B DG 14 ? ? C8 B DG 14 ? ? N9 B DG 14 ? ? 116.34 113.10 3.24 0.50 N 85 4 "O4'" B DC 15 ? ? "C1'" B DC 15 ? ? N1 B DC 15 ? ? 112.79 108.30 4.49 0.30 N 86 4 "O4'" B DT 17 ? ? "C1'" B DT 17 ? ? N1 B DT 17 ? ? 111.12 108.30 2.82 0.30 N 87 4 "O4'" B DA 20 ? ? "C1'" B DA 20 ? ? N9 B DA 20 ? ? 110.83 108.30 2.53 0.30 N 88 4 "O4'" B DT 23 ? ? "C1'" B DT 23 ? ? N1 B DT 23 ? ? 110.24 108.30 1.94 0.30 N 89 4 N7 B DG 24 ? ? C8 B DG 24 ? ? N9 B DG 24 ? ? 116.39 113.10 3.29 0.50 N 90 4 "O4'" B DG 26 ? ? "C1'" B DG 26 ? ? N9 B DG 26 ? ? 111.17 108.30 2.87 0.30 N 91 5 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? "C2'" A DG 2 ? ? 100.81 105.90 -5.09 0.80 N 92 5 N7 A DG 2 ? ? C8 A DG 2 ? ? N9 A DG 2 ? ? 116.18 113.10 3.08 0.50 N 93 5 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 110.57 108.30 2.27 0.30 N 94 5 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 111.53 108.30 3.23 0.30 N 95 5 "C3'" A DG 6 ? ? "C2'" A DG 6 ? ? "C1'" A DG 6 ? ? 96.11 102.40 -6.29 0.80 N 96 5 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 113.41 108.30 5.11 0.30 N 97 5 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 111.46 108.30 3.16 0.30 N 98 5 N7 A DA 10 ? ? C8 A DA 10 ? ? N9 A DA 10 ? ? 117.58 113.80 3.78 0.50 N 99 5 "C4'" A DC 11 ? ? "C3'" A DC 11 ? ? "C2'" A DC 11 ? ? 96.69 102.20 -5.51 0.70 N 100 5 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 119.84 108.30 11.54 0.30 N 101 5 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? N9 A DG 12 ? ? 110.73 108.30 2.43 0.30 N 102 5 N7 A DG 12 ? ? C8 A DG 12 ? ? N9 A DG 12 ? ? 116.28 113.10 3.18 0.50 N 103 5 "O4'" A DC 13 ? ? "C1'" A DC 13 ? ? N1 A DC 13 ? ? 116.89 108.30 8.59 0.30 N 104 5 N7 B DG 14 ? ? C8 B DG 14 ? ? N9 B DG 14 ? ? 116.29 113.10 3.19 0.50 N 105 5 "O4'" B DC 15 ? ? "C1'" B DC 15 ? ? N1 B DC 15 ? ? 112.58 108.30 4.28 0.30 N 106 5 C8 B DG 16 ? ? N9 B DG 16 ? ? C4 B DG 16 ? ? 104.00 106.40 -2.40 0.40 N 107 5 "O4'" B DT 17 ? ? "C1'" B DT 17 ? ? N1 B DT 17 ? ? 110.97 108.30 2.67 0.30 N 108 5 "O4'" B DA 20 ? ? "C1'" B DA 20 ? ? N9 B DA 20 ? ? 110.64 108.30 2.34 0.30 N 109 5 "O4'" B DT 23 ? ? "C1'" B DT 23 ? ? N1 B DT 23 ? ? 110.21 108.30 1.91 0.30 N 110 5 N7 B DG 24 ? ? C8 B DG 24 ? ? N9 B DG 24 ? ? 116.46 113.10 3.36 0.50 N 111 6 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 110.73 108.30 2.43 0.30 N 112 6 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? "C2'" A DG 2 ? ? 100.50 105.90 -5.40 0.80 N 113 6 N7 A DG 2 ? ? C8 A DG 2 ? ? N9 A DG 2 ? ? 116.26 113.10 3.16 0.50 N 114 6 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 110.64 108.30 2.34 0.30 N 115 6 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 111.49 108.30 3.19 0.30 N 116 6 "C3'" A DG 6 ? ? "C2'" A DG 6 ? ? "C1'" A DG 6 ? ? 96.75 102.40 -5.65 0.80 N 117 6 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 111.68 108.30 3.38 0.30 N 118 6 N7 A DG 6 ? ? C8 A DG 6 ? ? N9 A DG 6 ? ? 116.13 113.10 3.03 0.50 N 119 6 N7 A DG 8 ? ? C8 A DG 8 ? ? N9 A DG 8 ? ? 116.39 113.10 3.29 0.50 N 120 6 N7 A DA 10 ? ? C8 A DA 10 ? ? N9 A DA 10 ? ? 117.82 113.80 4.02 0.50 N 121 6 C8 A DA 10 ? ? N9 A DA 10 ? ? C4 A DA 10 ? ? 103.32 105.80 -2.48 0.40 N 122 6 "C4'" A DC 11 ? ? "C3'" A DC 11 ? ? "C2'" A DC 11 ? ? 96.21 102.20 -5.99 0.70 N 123 6 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 119.99 108.30 11.69 0.30 N 124 6 N7 A DG 12 ? ? C8 A DG 12 ? ? N9 A DG 12 ? ? 116.45 113.10 3.35 0.50 N 125 6 C8 A DG 12 ? ? N9 A DG 12 ? ? C4 A DG 12 ? ? 103.95 106.40 -2.45 0.40 N 126 6 "O4'" A DC 13 ? ? "C1'" A DC 13 ? ? N1 A DC 13 ? ? 115.99 108.30 7.69 0.30 N 127 6 N7 B DG 14 ? ? C8 B DG 14 ? ? N9 B DG 14 ? ? 116.25 113.10 3.15 0.50 N 128 6 "O4'" B DC 15 ? ? "C1'" B DC 15 ? ? N1 B DC 15 ? ? 112.64 108.30 4.34 0.30 N 129 6 "O4'" B DA 18 ? ? "C1'" B DA 18 ? ? "C2'" B DA 18 ? ? 100.74 105.90 -5.16 0.80 N 130 6 N7 B DA 18 ? ? C8 B DA 18 ? ? N9 B DA 18 ? ? 117.02 113.80 3.22 0.50 N 131 6 "O4'" B DA 20 ? ? "C1'" B DA 20 ? ? N9 B DA 20 ? ? 110.43 108.30 2.13 0.30 N 132 6 "O4'" B DC 21 ? ? "C1'" B DC 21 ? ? N1 B DC 21 ? ? 110.67 108.30 2.37 0.30 N 133 6 N7 B DG 24 ? ? C8 B DG 24 ? ? N9 B DG 24 ? ? 116.31 113.10 3.21 0.50 N 134 6 "C3'" B DG 26 ? ? "C2'" B DG 26 ? ? "C1'" B DG 26 ? ? 97.34 102.40 -5.06 0.80 N 135 6 "O4'" B DG 26 ? ? "C1'" B DG 26 ? ? N9 B DG 26 ? ? 111.14 108.30 2.84 0.30 N # loop_ _pdbx_validate_chiral.id _pdbx_validate_chiral.PDB_model_num _pdbx_validate_chiral.auth_atom_id _pdbx_validate_chiral.label_alt_id _pdbx_validate_chiral.auth_asym_id _pdbx_validate_chiral.auth_comp_id _pdbx_validate_chiral.auth_seq_id _pdbx_validate_chiral.PDB_ins_code _pdbx_validate_chiral.details _pdbx_validate_chiral.omega 1 1 "C3'" ? A DG 6 ? 'WRONG HAND' . 2 1 "C3'" ? B 3DR 19 ? 'WRONG HAND' . 3 2 "C3'" ? A DG 6 ? 'WRONG HAND' . 4 2 "C3'" ? B 3DR 19 ? 'WRONG HAND' . 5 3 "C3'" ? A DG 6 ? 'WRONG HAND' . 6 3 "C3'" ? B 3DR 19 ? 'WRONG HAND' . 7 4 "C3'" ? A DG 6 ? 'WRONG HAND' . 8 4 "C3'" ? B 3DR 19 ? 'WRONG HAND' . 9 5 "C3'" ? A DG 6 ? 'WRONG HAND' . 10 5 "C3'" ? B 3DR 19 ? 'WRONG HAND' . 11 6 "C3'" ? A DG 6 ? 'WRONG HAND' . 12 6 "C3'" ? B 3DR 19 ? 'WRONG HAND' . # _pdbx_nmr_ensemble.entry_id 1HT7 _pdbx_nmr_ensemble.conformers_calculated_total_number 30 _pdbx_nmr_ensemble.conformers_submitted_total_number 6 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system 1 '2mM duplex in 20 mM phosphate buffer, pH 7.6; 50 mM NaCl; 1 mM EDTA.' '99.96% D2O' 2 '2mM duplex in 20 mM phosphate buffer, pH 7.6; 50 mM NaCl; 1 mM EDTA.' '90% H2O/10% D2O (v/v)' # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.temperature_units 1 298 ambient 7.6 'not determined' ? K 2 276 ambient 7.6 'not determined' ? K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type 1 1 1 '2D NOESY' 2 1 1 'COSY, COSY45, TOCSY, DQFCOSY, HETCOR' 3 2 2 '2D NOESY' # _pdbx_nmr_refine.entry_id 1HT7 _pdbx_nmr_refine.method 'Restrained molecular dynamics' _pdbx_nmr_refine.details ;1) Heating stage: from 100 to 500 K in 4ps. Introduction of experimental restraints at the end of this stage. 2) High temperature stage: 80 ps dynamics at 500K 3) Cooling stage: From 500 to 300K in 40ps. 4) Equilibration stage: 140ps dynamics at 300K. ; _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.classification _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal Felix 98 processing MSI 1 MARDIGRAS 5 'data analysis' 'Borgia & James' 2 X-PLOR 3.1 refinement 'A. Brunger' 3 Insight 95 'data analysis' MSI 4 Midas Plus 'data analysis' UCSF 5 Curves 5 'data analysis' 'Sklenar & Lavery' 6 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 3DR "O5'" O N N 1 3DR P P N N 2 3DR OP1 O N N 3 3DR OP2 O N N 4 3DR OP3 O N N 5 3DR "C2'" C N N 6 3DR "C5'" C N N 7 3DR "C4'" C N R 8 3DR "O4'" O N N 9 3DR "C1'" C N N 10 3DR "C3'" C N S 11 3DR "O3'" O N N 12 3DR HOP2 H N N 13 3DR HOP3 H N N 14 3DR "H2'" H N N 15 3DR "H2''" H N N 16 3DR "H5'" H N N 17 3DR "H5''" H N N 18 3DR "H4'1" H N N 19 3DR "H1'1" H N N 20 3DR "H1'2" H N N 21 3DR "H3'" H N N 22 3DR "HO3'" H N N 23 DA OP3 O N N 24 DA P P N N 25 DA OP1 O N N 26 DA OP2 O N N 27 DA "O5'" O N N 28 DA "C5'" C N N 29 DA "C4'" C N R 30 DA "O4'" O N N 31 DA "C3'" C N S 32 DA "O3'" O N N 33 DA "C2'" C N N 34 DA "C1'" C N R 35 DA N9 N Y N 36 DA C8 C Y N 37 DA N7 N Y N 38 DA C5 C Y N 39 DA C6 C Y N 40 DA N6 N N N 41 DA N1 N Y N 42 DA C2 C Y N 43 DA N3 N Y N 44 DA C4 C Y N 45 DA HOP3 H N N 46 DA HOP2 H N N 47 DA "H5'" H N N 48 DA "H5''" H N N 49 DA "H4'" H N N 50 DA "H3'" H N N 51 DA "HO3'" H N N 52 DA "H2'" H N N 53 DA "H2''" H N N 54 DA "H1'" H N N 55 DA H8 H N N 56 DA H61 H N N 57 DA H62 H N N 58 DA H2 H N N 59 DC OP3 O N N 60 DC P P N N 61 DC OP1 O N N 62 DC OP2 O N N 63 DC "O5'" O N N 64 DC "C5'" C N N 65 DC "C4'" C N R 66 DC "O4'" O N N 67 DC "C3'" C N S 68 DC "O3'" O N N 69 DC "C2'" C N N 70 DC "C1'" C N R 71 DC N1 N N N 72 DC C2 C N N 73 DC O2 O N N 74 DC N3 N N N 75 DC C4 C N N 76 DC N4 N N N 77 DC C5 C N N 78 DC C6 C N N 79 DC HOP3 H N N 80 DC HOP2 H N N 81 DC "H5'" H N N 82 DC "H5''" H N N 83 DC "H4'" H N N 84 DC "H3'" H N N 85 DC "HO3'" H N N 86 DC "H2'" H N N 87 DC "H2''" H N N 88 DC "H1'" H N N 89 DC H41 H N N 90 DC H42 H N N 91 DC H5 H N N 92 DC H6 H N N 93 DG OP3 O N N 94 DG P P N N 95 DG OP1 O N N 96 DG OP2 O N N 97 DG "O5'" O N N 98 DG "C5'" C N N 99 DG "C4'" C N R 100 DG "O4'" O N N 101 DG "C3'" C N S 102 DG "O3'" O N N 103 DG "C2'" C N N 104 DG "C1'" C N R 105 DG N9 N Y N 106 DG C8 C Y N 107 DG N7 N Y N 108 DG C5 C Y N 109 DG C6 C N N 110 DG O6 O N N 111 DG N1 N N N 112 DG C2 C N N 113 DG N2 N N N 114 DG N3 N N N 115 DG C4 C Y N 116 DG HOP3 H N N 117 DG HOP2 H N N 118 DG "H5'" H N N 119 DG "H5''" H N N 120 DG "H4'" H N N 121 DG "H3'" H N N 122 DG "HO3'" H N N 123 DG "H2'" H N N 124 DG "H2''" H N N 125 DG "H1'" H N N 126 DG H8 H N N 127 DG H1 H N N 128 DG H21 H N N 129 DG H22 H N N 130 DT OP3 O N N 131 DT P P N N 132 DT OP1 O N N 133 DT OP2 O N N 134 DT "O5'" O N N 135 DT "C5'" C N N 136 DT "C4'" C N R 137 DT "O4'" O N N 138 DT "C3'" C N S 139 DT "O3'" O N N 140 DT "C2'" C N N 141 DT "C1'" C N R 142 DT N1 N N N 143 DT C2 C N N 144 DT O2 O N N 145 DT N3 N N N 146 DT C4 C N N 147 DT O4 O N N 148 DT C5 C N N 149 DT C7 C N N 150 DT C6 C N N 151 DT HOP3 H N N 152 DT HOP2 H N N 153 DT "H5'" H N N 154 DT "H5''" H N N 155 DT "H4'" H N N 156 DT "H3'" H N N 157 DT "HO3'" H N N 158 DT "H2'" H N N 159 DT "H2''" H N N 160 DT "H1'" H N N 161 DT H3 H N N 162 DT H71 H N N 163 DT H72 H N N 164 DT H73 H N N 165 DT H6 H N N 166 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 3DR "O5'" P sing N N 1 3DR "O5'" "C5'" sing N N 2 3DR P OP1 doub N N 3 3DR P OP2 sing N N 4 3DR P OP3 sing N N 5 3DR OP2 HOP2 sing N N 6 3DR OP3 HOP3 sing N N 7 3DR "C2'" "C1'" sing N N 8 3DR "C2'" "C3'" sing N N 9 3DR "C2'" "H2'" sing N N 10 3DR "C2'" "H2''" sing N N 11 3DR "C5'" "C4'" sing N N 12 3DR "C5'" "H5'" sing N N 13 3DR "C5'" "H5''" sing N N 14 3DR "C4'" "O4'" sing N N 15 3DR "C4'" "C3'" sing N N 16 3DR "C4'" "H4'1" sing N N 17 3DR "O4'" "C1'" sing N N 18 3DR "C1'" "H1'1" sing N N 19 3DR "C1'" "H1'2" sing N N 20 3DR "C3'" "O3'" sing N N 21 3DR "C3'" "H3'" sing N N 22 3DR "O3'" "HO3'" sing N N 23 DA OP3 P sing N N 24 DA OP3 HOP3 sing N N 25 DA P OP1 doub N N 26 DA P OP2 sing N N 27 DA P "O5'" sing N N 28 DA OP2 HOP2 sing N N 29 DA "O5'" "C5'" sing N N 30 DA "C5'" "C4'" sing N N 31 DA "C5'" "H5'" sing N N 32 DA "C5'" "H5''" sing N N 33 DA "C4'" "O4'" sing N N 34 DA "C4'" "C3'" sing N N 35 DA "C4'" "H4'" sing N N 36 DA "O4'" "C1'" sing N N 37 DA "C3'" "O3'" sing N N 38 DA "C3'" "C2'" sing N N 39 DA "C3'" "H3'" sing N N 40 DA "O3'" "HO3'" sing N N 41 DA "C2'" "C1'" sing N N 42 DA "C2'" "H2'" sing N N 43 DA "C2'" "H2''" sing N N 44 DA "C1'" N9 sing N N 45 DA "C1'" "H1'" sing N N 46 DA N9 C8 sing Y N 47 DA N9 C4 sing Y N 48 DA C8 N7 doub Y N 49 DA C8 H8 sing N N 50 DA N7 C5 sing Y N 51 DA C5 C6 sing Y N 52 DA C5 C4 doub Y N 53 DA C6 N6 sing N N 54 DA C6 N1 doub Y N 55 DA N6 H61 sing N N 56 DA N6 H62 sing N N 57 DA N1 C2 sing Y N 58 DA C2 N3 doub Y N 59 DA C2 H2 sing N N 60 DA N3 C4 sing Y N 61 DC OP3 P sing N N 62 DC OP3 HOP3 sing N N 63 DC P OP1 doub N N 64 DC P OP2 sing N N 65 DC P "O5'" sing N N 66 DC OP2 HOP2 sing N N 67 DC "O5'" "C5'" sing N N 68 DC "C5'" "C4'" sing N N 69 DC "C5'" "H5'" sing N N 70 DC "C5'" "H5''" sing N N 71 DC "C4'" "O4'" sing N N 72 DC "C4'" "C3'" sing N N 73 DC "C4'" "H4'" sing N N 74 DC "O4'" "C1'" sing N N 75 DC "C3'" "O3'" sing N N 76 DC "C3'" "C2'" sing N N 77 DC "C3'" "H3'" sing N N 78 DC "O3'" "HO3'" sing N N 79 DC "C2'" "C1'" sing N N 80 DC "C2'" "H2'" sing N N 81 DC "C2'" "H2''" sing N N 82 DC "C1'" N1 sing N N 83 DC "C1'" "H1'" sing N N 84 DC N1 C2 sing N N 85 DC N1 C6 sing N N 86 DC C2 O2 doub N N 87 DC C2 N3 sing N N 88 DC N3 C4 doub N N 89 DC C4 N4 sing N N 90 DC C4 C5 sing N N 91 DC N4 H41 sing N N 92 DC N4 H42 sing N N 93 DC C5 C6 doub N N 94 DC C5 H5 sing N N 95 DC C6 H6 sing N N 96 DG OP3 P sing N N 97 DG OP3 HOP3 sing N N 98 DG P OP1 doub N N 99 DG P OP2 sing N N 100 DG P "O5'" sing N N 101 DG OP2 HOP2 sing N N 102 DG "O5'" "C5'" sing N N 103 DG "C5'" "C4'" sing N N 104 DG "C5'" "H5'" sing N N 105 DG "C5'" "H5''" sing N N 106 DG "C4'" "O4'" sing N N 107 DG "C4'" "C3'" sing N N 108 DG "C4'" "H4'" sing N N 109 DG "O4'" "C1'" sing N N 110 DG "C3'" "O3'" sing N N 111 DG "C3'" "C2'" sing N N 112 DG "C3'" "H3'" sing N N 113 DG "O3'" "HO3'" sing N N 114 DG "C2'" "C1'" sing N N 115 DG "C2'" "H2'" sing N N 116 DG "C2'" "H2''" sing N N 117 DG "C1'" N9 sing N N 118 DG "C1'" "H1'" sing N N 119 DG N9 C8 sing Y N 120 DG N9 C4 sing Y N 121 DG C8 N7 doub Y N 122 DG C8 H8 sing N N 123 DG N7 C5 sing Y N 124 DG C5 C6 sing N N 125 DG C5 C4 doub Y N 126 DG C6 O6 doub N N 127 DG C6 N1 sing N N 128 DG N1 C2 sing N N 129 DG N1 H1 sing N N 130 DG C2 N2 sing N N 131 DG C2 N3 doub N N 132 DG N2 H21 sing N N 133 DG N2 H22 sing N N 134 DG N3 C4 sing N N 135 DT OP3 P sing N N 136 DT OP3 HOP3 sing N N 137 DT P OP1 doub N N 138 DT P OP2 sing N N 139 DT P "O5'" sing N N 140 DT OP2 HOP2 sing N N 141 DT "O5'" "C5'" sing N N 142 DT "C5'" "C4'" sing N N 143 DT "C5'" "H5'" sing N N 144 DT "C5'" "H5''" sing N N 145 DT "C4'" "O4'" sing N N 146 DT "C4'" "C3'" sing N N 147 DT "C4'" "H4'" sing N N 148 DT "O4'" "C1'" sing N N 149 DT "C3'" "O3'" sing N N 150 DT "C3'" "C2'" sing N N 151 DT "C3'" "H3'" sing N N 152 DT "O3'" "HO3'" sing N N 153 DT "C2'" "C1'" sing N N 154 DT "C2'" "H2'" sing N N 155 DT "C2'" "H2''" sing N N 156 DT "C1'" N1 sing N N 157 DT "C1'" "H1'" sing N N 158 DT N1 C2 sing N N 159 DT N1 C6 sing N N 160 DT C2 O2 doub N N 161 DT C2 N3 sing N N 162 DT N3 C4 sing N N 163 DT N3 H3 sing N N 164 DT C4 O4 doub N N 165 DT C4 C5 sing N N 166 DT C5 C7 sing N N 167 DT C5 C6 doub N N 168 DT C7 H71 sing N N 169 DT C7 H72 sing N N 170 DT C7 H73 sing N N 171 DT C6 H6 sing N N 172 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1HT7 'double helix' 1HT7 'b-form double helix' 1HT7 'internal loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 13 1_555 0.583 -0.250 0.312 -2.539 -8.521 -2.082 1 A_DC1:DG26_B A 1 ? B 26 ? 19 1 1 A DG 2 1_555 B DC 12 1_555 -0.693 -0.283 -0.015 -7.797 -9.655 -2.030 2 A_DG2:DC25_B A 2 ? B 25 ? 19 1 1 A DC 3 1_555 B DG 11 1_555 0.663 -0.284 0.652 -12.268 -4.493 -3.418 3 A_DC3:DG24_B A 3 ? B 24 ? 19 1 1 A DA 4 1_555 B DT 10 1_555 0.128 -0.199 0.375 -3.121 -10.431 -3.500 4 A_DA4:DT23_B A 4 ? B 23 ? 20 1 1 A DT 5 1_555 B DA 9 1_555 -0.021 -0.147 0.063 -1.530 -7.203 -3.098 5 A_DT5:DA22_B A 5 ? B 22 ? 20 1 1 A DG 6 1_555 B DC 8 1_555 -0.615 -0.211 0.275 3.379 2.243 -1.193 6 A_DG6:DC21_B A 6 ? B 21 ? 19 1 1 A DT 9 1_555 B DA 5 1_555 0.129 -0.220 0.253 -10.681 -6.885 0.557 7 A_DT9:DA18_B A 9 ? B 18 ? 20 1 1 A DA 10 1_555 B DT 4 1_555 0.166 -0.169 -0.062 10.687 -10.454 -4.169 8 A_DA10:DT17_B A 10 ? B 17 ? 20 1 1 A DC 11 1_555 B DG 3 1_555 0.799 -0.210 0.100 12.336 -16.470 0.376 9 A_DC11:DG16_B A 11 ? B 16 ? 19 1 1 A DG 12 1_555 B DC 2 1_555 -0.783 -0.319 -0.033 2.241 -11.218 -1.264 10 A_DG12:DC15_B A 12 ? B 15 ? 19 1 1 A DC 13 1_555 B DG 1 1_555 0.787 -0.301 -0.069 6.779 -6.426 -1.573 11 A_DC13:DG14_B A 13 ? B 14 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 13 1_555 A DG 2 1_555 B DC 12 1_555 0.581 -1.397 2.922 5.931 7.351 29.873 -3.785 -0.112 2.579 13.831 -11.159 31.298 1 AA_DC1DG2:DC25DG26_BB A 1 ? B 26 ? A 2 ? B 25 ? 1 A DG 2 1_555 B DC 12 1_555 A DC 3 1_555 B DG 11 1_555 -0.760 -0.570 3.218 -7.755 -4.541 41.257 -0.318 0.246 3.343 -6.354 10.851 42.182 2 AA_DG2DC3:DG24DC25_BB A 2 ? B 25 ? A 3 ? B 24 ? 1 A DC 3 1_555 B DG 11 1_555 A DA 4 1_555 B DT 10 1_555 0.187 -1.177 2.634 3.806 -0.653 37.669 -1.746 0.108 2.659 -1.008 -5.876 37.859 3 AA_DC3DA4:DT23DG24_BB A 3 ? B 24 ? A 4 ? B 23 ? 1 A DA 4 1_555 B DT 10 1_555 A DT 5 1_555 B DA 9 1_555 0.021 -0.902 3.065 3.297 -2.336 31.367 -1.245 0.539 3.108 -4.297 -6.066 31.620 4 AA_DA4DT5:DA22DT23_BB A 4 ? B 23 ? A 5 ? B 22 ? 1 A DT 5 1_555 B DA 9 1_555 A DG 6 1_555 B DC 8 1_555 0.245 -1.006 2.773 -4.160 12.716 35.074 -2.891 -0.815 2.245 20.214 6.613 37.464 5 AA_DT5DG6:DC21DA22_BB A 5 ? B 22 ? A 6 ? B 21 ? 1 A DT 9 1_555 B DA 5 1_555 A DA 10 1_555 B DT 4 1_555 -0.470 -0.015 2.731 3.663 9.590 37.349 -0.999 1.083 2.594 14.640 -5.591 38.686 6 AA_DT9DA10:DT17DA18_BB A 9 ? B 18 ? A 10 ? B 17 ? 1 A DA 10 1_555 B DT 4 1_555 A DC 11 1_555 B DG 3 1_555 1.068 -0.385 3.211 -3.308 0.245 29.467 -0.801 -2.758 3.072 0.480 6.477 29.649 7 AA_DA10DC11:DG16DT17_BB A 10 ? B 17 ? A 11 ? B 16 ? 1 A DC 11 1_555 B DG 3 1_555 A DG 12 1_555 B DC 2 1_555 -0.156 -1.410 2.930 2.915 22.197 29.270 -4.551 0.551 1.506 37.745 -4.956 36.701 8 AA_DC11DG12:DC15DG16_BB A 11 ? B 16 ? A 12 ? B 15 ? 1 A DG 12 1_555 B DC 2 1_555 A DC 13 1_555 B DG 1 1_555 0.578 -0.890 3.036 1.163 -1.001 40.522 -1.180 -0.713 3.071 -1.444 -1.679 40.550 9 AA_DG12DC13:DG14DC15_BB A 12 ? B 15 ? A 13 ? B 14 ? # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.field_strength 1 ? Varian INOVA 500 2 ? Varian INOVA 600 # _atom_sites.entry_id 1HT7 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_