HEADER DNA BINDING PROTEIN 11-JAN-01 1HX7 TITLE SOLUTION STRUCTURE OF THE CATALYTIC DOMAIN OF GAMMA DELTA RESOLVASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSPOSON GAMMA-DELTA RESOLVASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL CATALYTIC DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PDJ1.3 KEYWDS RECOMBINASE, CATALYTIC DOMAIN, MIXED ALPHA BETA, MONOMER, DNA BINDING KEYWDS 2 PROTEIN EXPDTA SOLUTION NMR NUMMDL 19 AUTHOR B.PAN,G.P.MULLEN REVDAT 3 23-FEB-22 1HX7 1 REMARK REVDAT 2 24-FEB-09 1HX7 1 VERSN REVDAT 1 16-JAN-02 1HX7 0 JRNL AUTH B.PAN,M.W.MACIEJEWSKI,A.MARINTCHEV,G.P.MULLEN JRNL TITL SOLUTION STRUCTURE OF THE CATALYTIC DOMAIN OF GAMMADELTA JRNL TITL 2 RESOLVASE. IMPLICATIONS FOR THE MECHANISM OF CATALYSIS. JRNL REF J.MOL.BIOL. V. 310 1089 2001 JRNL REFN ISSN 0022-2836 JRNL PMID 11501998 JRNL DOI 10.1006/JMBI.2001.4821 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH B.PAN,G.P.MULLEN REMARK 1 TITL 1H, 15N AND 13C RESONANCE ASSIGNMENTS FOR THE CATALYTIC CORE REMARK 1 TITL 2 OF GAMMA DELTA RESOLVASE REMARK 1 REF J.BIOMOL.NMR V. 13 307 1999 REMARK 1 REFN ISSN 0925-2738 REMARK 1 DOI 10.1023/A:1008316603457 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1, XPLOR 4.0 REMARK 3 AUTHORS : VARIAN (VNMR), BRUNGER (XPLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE NMR RESTRAINTS INCLUDED 2109 USEFUL REMARK 3 NOE DETERMINED UPPER DISTANCE RESTRAINTS, 35 HYDROGEN BONDS, AND REMARK 3 297 TORSION ANGLE RESTRAINTS. STRUCTURES WERE CALCULATED IN THE REMARK 3 DYANA USING TORSION ANGLE DYNAMICS. THE CALCULATION STARTED WITH REMARK 3 200 RANDOMIZED STRUCTURES. THE 19 STRUCTURES WITH THE LOWEST REMARK 3 TARGET FUNCTION WERE REFINED WITHIN XPLOR USING SIMULATED REMARK 3 ANNEALING. THE 19 REFINED STRUCTURAL CONFORMERS DISPLAYED NO NOE REMARK 3 VIOLATIONS >0.3 ANGSTROMS AND NO DIHEDRAL ANGLE VIOLATIONS >3 REMARK 3 DEGREES. REMARK 4 REMARK 4 1HX7 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-JAN-01. REMARK 100 THE DEPOSITION ID IS D_1000012651. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 1M REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.002 M GAMMA DELTA RESOLVASE (1 REMARK 210 -105) U-15N; 0.020 M PHOSPHATE REMARK 210 BUFFER, PH 6.5; 90% H2O, 10% D2O; REMARK 210 0.002 M GAMMA DELTA RESOLVASE REMARK 210 (1-105) U-15N,13C; 0.020 M REMARK 210 PHOSPHATE BUFFER, PH 6.5; 90% REMARK 210 H2O, 10% D2O; 0.002 M GAMMA REMARK 210 DELTA RESOLVASE (1-105) U-15N, REMARK 210 13C; 0.020 M PHOSPHATE BUFFER, REMARK 210 PH 6.5; 99% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; HNHA; REMARK 210 3D_13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 1.7, XEASY 1.3.13, DYANA REMARK 210 1.5 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS AND REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 19 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST ENERGY AND AGREEMENT WITH REMARK 210 EXPERIMENTAL NOESY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE 3D NMR REMARK 210 SPECTROSCOPY FOR RESONANCE ASSIGNMENTS AND DOUBLE-RESONANCE 3D REMARK 210 NMR SPECTROSCOPY FOR OBTAINING NOESY DATA. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLN A 13 -161.09 -62.46 REMARK 500 1 ARG A 32 58.91 -111.01 REMARK 500 1 ARG A 45 56.57 -105.68 REMARK 500 1 LYS A 64 59.27 -100.52 REMARK 500 1 ASP A 67 -60.33 -176.02 REMARK 500 1 ARG A 68 131.27 179.95 REMARK 500 1 ASP A 72 -73.46 -174.60 REMARK 500 1 ALA A 74 37.88 -177.80 REMARK 500 1 ASP A 95 28.47 -162.17 REMARK 500 1 SER A 98 -69.98 -127.75 REMARK 500 1 ASP A 100 88.27 -61.31 REMARK 500 1 MET A 103 -63.33 -94.13 REMARK 500 2 SER A 10 -44.77 -136.16 REMARK 500 2 GLN A 13 -55.36 -176.99 REMARK 500 2 GLN A 14 33.43 -167.73 REMARK 500 2 ARG A 32 58.62 -110.46 REMARK 500 2 LYS A 37 81.61 -66.02 REMARK 500 2 ASP A 44 62.16 -106.66 REMARK 500 2 ASP A 67 -50.91 -155.42 REMARK 500 2 ARG A 68 133.56 179.24 REMARK 500 2 ASP A 72 39.10 -167.70 REMARK 500 2 THR A 73 -157.96 -166.32 REMARK 500 2 ALA A 74 47.79 -90.21 REMARK 500 2 GLN A 78 -70.65 -58.06 REMARK 500 2 ASP A 95 -52.30 -153.81 REMARK 500 2 SER A 98 -71.32 -66.05 REMARK 500 2 THR A 99 68.38 -177.40 REMARK 500 2 ASP A 100 94.44 -58.82 REMARK 500 3 VAL A 9 -174.63 -58.59 REMARK 500 3 SER A 10 -42.19 -164.72 REMARK 500 3 GLN A 13 -158.53 -62.45 REMARK 500 3 ARG A 32 58.66 -109.72 REMARK 500 3 LYS A 37 50.57 -94.78 REMARK 500 3 ASP A 44 43.86 -156.26 REMARK 500 3 ARG A 45 84.98 -60.71 REMARK 500 3 GLU A 57 101.96 -52.08 REMARK 500 3 ARG A 68 130.78 -175.37 REMARK 500 3 ALA A 74 77.25 -67.45 REMARK 500 3 GLN A 78 -70.55 -72.91 REMARK 500 3 ASP A 95 -68.90 -120.31 REMARK 500 3 GLU A 102 -173.26 -65.50 REMARK 500 4 LEU A 3 79.64 -105.87 REMARK 500 4 VAL A 9 -176.01 -55.63 REMARK 500 4 SER A 10 -43.04 -160.83 REMARK 500 4 THR A 11 -159.29 -83.93 REMARK 500 4 GLN A 13 -76.29 -48.39 REMARK 500 4 GLN A 14 59.34 -152.79 REMARK 500 4 ARG A 32 58.53 -110.95 REMARK 500 4 LYS A 37 57.45 -98.01 REMARK 500 4 SER A 41 -73.30 -114.76 REMARK 500 REMARK 500 THIS ENTRY HAS 282 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4269 RELATED DB: BMRB REMARK 900 4269 IS THE 1H, 15N AND 13C CHEMICAL SHIFT ASSIGNMENTS FOR THE REMARK 900 CATALYTIC CORE OF GAMMA DELTA RESOLVASE DBREF 1HX7 A 1 105 UNP P03012 TNR1_ECOLI 1 105 SEQRES 1 A 105 MET ARG LEU PHE GLY TYR ALA ARG VAL SER THR SER GLN SEQRES 2 A 105 GLN SER LEU ASP ILE GLN VAL ARG ALA LEU LYS ASP ALA SEQRES 3 A 105 GLY VAL LYS ALA ASN ARG ILE PHE THR ASP LYS ALA SER SEQRES 4 A 105 GLY SER SER SER ASP ARG LYS GLY LEU ASP LEU LEU ARG SEQRES 5 A 105 MET LYS VAL GLU GLU GLY ASP VAL ILE LEU VAL LYS LYS SEQRES 6 A 105 LEU ASP ARG LEU GLY ARG ASP THR ALA ASP MET ILE GLN SEQRES 7 A 105 LEU ILE LYS GLU PHE ASP ALA GLN GLY VAL SER ILE ARG SEQRES 8 A 105 PHE ILE ASP ASP GLY ILE SER THR ASP GLY GLU MET GLY SEQRES 9 A 105 LYS HELIX 1 1 GLN A 14 GLY A 27 1 14 HELIX 2 2 LYS A 29 ASN A 31 5 3 HELIX 3 3 LYS A 46 ARG A 52 1 7 HELIX 4 4 ILE A 77 GLN A 86 1 10 SHEET 1 A 3 ILE A 33 PHE A 34 0 SHEET 2 A 3 LEU A 3 TYR A 6 1 O GLY A 5 N PHE A 34 SHEET 3 A 3 VAL A 60 VAL A 63 1 O VAL A 60 N PHE A 4 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1