data_1HY5 # _entry.id 1HY5 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1HY5 RCSB RCSB012678 WWPDB D_1000012678 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1HE9 '1HE9 IS Analogous protein from Pseudomonas aeruginosa' unspecified PDB 1HE1 '1HE1 IS Analogous protein from Pseudomonas aeruginosa' unspecified PDB 1G4U '1G4U IS Analogous protein from Salmonella' unspecified PDB 1G4W '1G4W IS Analogous protein from Salmonella' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1HY5 _pdbx_database_status.recvd_initial_deposition_date 2001-01-18 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Evdokimov, A.G.' 1 'Tropea, J.E.' 2 'Routzahn, K.M.' 3 'Waugh, D.S.' 4 # _citation.id primary _citation.title 'Crystal structure of the Yersinia pestis GTPase activator YopE.' _citation.journal_abbrev 'Protein Sci.' _citation.journal_volume 11 _citation.page_first 401 _citation.page_last 408 _citation.year 2002 _citation.journal_id_ASTM PRCIEI _citation.country US _citation.journal_id_ISSN 0961-8368 _citation.journal_id_CSD 0795 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 11790850 _citation.pdbx_database_id_DOI 10.1110/ps.34102 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Evdokimov, A.G.' 1 primary 'Tropea, J.E.' 2 primary 'Routzahn, K.M.' 3 primary 'Waugh, D.S.' 4 # _cell.entry_id 1HY5 _cell.length_a 62.692 _cell.length_b 71.978 _cell.length_c 62.684 _cell.angle_alpha 90.00 _cell.angle_beta 113.06 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1HY5 _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'YERSINIA PESTIS VIRULENCE PROTEIN YOPE' 14764.720 2 ? ? 'C-TERMINAL DOMAIN (RESIDUES 90-219); BACTERIAL GTPASE ACTIVATING PROTEIN (GAP DOMAIN)' ? 2 water nat water 18.015 67 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'YOPE, YERSINIA OUTER PROTEIN E' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;APTPAQ(MSE)PSPTSFSDSIKQLAAETLPKY(MSE)QQLNSLDAE(MSE)LQKNHDQFATGSGPLRGSITQCQGL (MSE)QFCGGELQAEASAILNTPVCGIPFSQWGTIGGAASAYVASGVDLTQAANEIKGLAQQ(MSE)QKLLSL(MSE)HH HHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;APTPAQMPSPTSFSDSIKQLAAETLPKYMQQLNSLDAEMLQKNHDQFATGSGPLRGSITQCQGLMQFCGGELQAEASAIL NTPVCGIPFSQWGTIGGAASAYVASGVDLTQAANEIKGLAQQMQKLLSLMHHHHHH ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 PRO n 1 3 THR n 1 4 PRO n 1 5 ALA n 1 6 GLN n 1 7 MSE n 1 8 PRO n 1 9 SER n 1 10 PRO n 1 11 THR n 1 12 SER n 1 13 PHE n 1 14 SER n 1 15 ASP n 1 16 SER n 1 17 ILE n 1 18 LYS n 1 19 GLN n 1 20 LEU n 1 21 ALA n 1 22 ALA n 1 23 GLU n 1 24 THR n 1 25 LEU n 1 26 PRO n 1 27 LYS n 1 28 TYR n 1 29 MSE n 1 30 GLN n 1 31 GLN n 1 32 LEU n 1 33 ASN n 1 34 SER n 1 35 LEU n 1 36 ASP n 1 37 ALA n 1 38 GLU n 1 39 MSE n 1 40 LEU n 1 41 GLN n 1 42 LYS n 1 43 ASN n 1 44 HIS n 1 45 ASP n 1 46 GLN n 1 47 PHE n 1 48 ALA n 1 49 THR n 1 50 GLY n 1 51 SER n 1 52 GLY n 1 53 PRO n 1 54 LEU n 1 55 ARG n 1 56 GLY n 1 57 SER n 1 58 ILE n 1 59 THR n 1 60 GLN n 1 61 CYS n 1 62 GLN n 1 63 GLY n 1 64 LEU n 1 65 MSE n 1 66 GLN n 1 67 PHE n 1 68 CYS n 1 69 GLY n 1 70 GLY n 1 71 GLU n 1 72 LEU n 1 73 GLN n 1 74 ALA n 1 75 GLU n 1 76 ALA n 1 77 SER n 1 78 ALA n 1 79 ILE n 1 80 LEU n 1 81 ASN n 1 82 THR n 1 83 PRO n 1 84 VAL n 1 85 CYS n 1 86 GLY n 1 87 ILE n 1 88 PRO n 1 89 PHE n 1 90 SER n 1 91 GLN n 1 92 TRP n 1 93 GLY n 1 94 THR n 1 95 ILE n 1 96 GLY n 1 97 GLY n 1 98 ALA n 1 99 ALA n 1 100 SER n 1 101 ALA n 1 102 TYR n 1 103 VAL n 1 104 ALA n 1 105 SER n 1 106 GLY n 1 107 VAL n 1 108 ASP n 1 109 LEU n 1 110 THR n 1 111 GLN n 1 112 ALA n 1 113 ALA n 1 114 ASN n 1 115 GLU n 1 116 ILE n 1 117 LYS n 1 118 GLY n 1 119 LEU n 1 120 ALA n 1 121 GLN n 1 122 GLN n 1 123 MSE n 1 124 GLN n 1 125 LYS n 1 126 LEU n 1 127 LEU n 1 128 SER n 1 129 LEU n 1 130 MSE n 1 131 HIS n 1 132 HIS n 1 133 HIS n 1 134 HIS n 1 135 HIS n 1 136 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Yersinia _entity_src_gen.pdbx_gene_src_gene YOPE _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Yersinia pestis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 632 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(RIL)DE3' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code YOPE_YERPE _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;APTPAQMPSPTSFSDSIKQLAAETLPKYMQQLNSLDAEMLQKNHDQFATGSGPLRGSITQCQGLMQFCGGELQAEASAIL NTPVCGIPFSQWGTIGGAASAYVASGVDLTQAANEIKGLAQQMQKLLSLM ; _struct_ref.pdbx_align_begin 90 _struct_ref.pdbx_db_accession P31493 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1HY5 A 1 ? 130 ? P31493 90 ? 219 ? 1090 1219 2 1 1HY5 B 1 ? 130 ? P31493 90 ? 219 ? 2090 2219 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1HY5 MSE A 7 ? UNP P31493 MET 96 'modified residue' 1096 1 1 1HY5 MSE A 29 ? UNP P31493 MET 118 'modified residue' 1118 2 1 1HY5 MSE A 39 ? UNP P31493 MET 128 'modified residue' 1128 3 1 1HY5 MSE A 65 ? UNP P31493 MET 154 'modified residue' 1154 4 1 1HY5 MSE A 123 ? UNP P31493 MET 212 'modified residue' 1212 5 1 1HY5 MSE A 130 ? UNP P31493 MET 219 'modified residue' 1219 6 1 1HY5 HIS A 131 ? UNP P31493 ? ? 'EXPRESSION TAG' 1220 7 1 1HY5 HIS A 132 ? UNP P31493 ? ? 'EXPRESSION TAG' 1221 8 1 1HY5 HIS A 133 ? UNP P31493 ? ? 'EXPRESSION TAG' 1222 9 1 1HY5 HIS A 134 ? UNP P31493 ? ? 'EXPRESSION TAG' 1223 10 1 1HY5 HIS A 135 ? UNP P31493 ? ? 'EXPRESSION TAG' 1224 11 1 1HY5 HIS A 136 ? UNP P31493 ? ? 'EXPRESSION TAG' 1225 12 2 1HY5 MSE B 7 ? UNP P31493 MET 96 'modified residue' 2096 13 2 1HY5 MSE B 29 ? UNP P31493 MET 118 'modified residue' 2118 14 2 1HY5 MSE B 39 ? UNP P31493 MET 128 'modified residue' 2128 15 2 1HY5 MSE B 65 ? UNP P31493 MET 154 'modified residue' 2154 16 2 1HY5 MSE B 123 ? UNP P31493 MET 212 'modified residue' 2212 17 2 1HY5 MSE B 130 ? UNP P31493 MET 219 'modified residue' 2219 18 2 1HY5 HIS B 131 ? UNP P31493 ? ? 'EXPRESSION TAG' 2220 19 2 1HY5 HIS B 132 ? UNP P31493 ? ? 'EXPRESSION TAG' 2221 20 2 1HY5 HIS B 133 ? UNP P31493 ? ? 'EXPRESSION TAG' 2222 21 2 1HY5 HIS B 134 ? UNP P31493 ? ? 'EXPRESSION TAG' 2223 22 2 1HY5 HIS B 135 ? UNP P31493 ? ? 'EXPRESSION TAG' 2224 23 2 1HY5 HIS B 136 ? UNP P31493 ? ? 'EXPRESSION TAG' 2225 24 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1HY5 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.52 _exptl_crystal.density_percent_sol 50.84 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 300 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 9 _exptl_crystal_grow.pdbx_details 'Ammonium sulphate, bicine, potassium nitrate, pH 9, VAPOR DIFFUSION, HANGING DROP, temperature 300K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'MAR scanner 345 mm plate' _diffrn_detector.pdbx_collection_date 2000-10-05 _diffrn_detector.details 'osmic mirrors' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator graphite _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type RIGAKU _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 1HY5 _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 100 _reflns.d_resolution_high 2.25 _reflns.number_obs 18478 _reflns.number_all 22062 _reflns.percent_possible_obs 96 _reflns.pdbx_Rmerge_I_obs 0.0400000 _reflns.pdbx_Rsym_value 0.0600000 _reflns.pdbx_netI_over_sigmaI 16 _reflns.B_iso_Wilson_estimate 39 _reflns.pdbx_redundancy 3.2 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.25 _reflns_shell.d_res_low 2.33 _reflns_shell.percent_possible_all 96.2 _reflns_shell.Rmerge_I_obs 0.2000000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 4.0 _reflns_shell.pdbx_redundancy 3.0 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 2291 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1HY5 _refine.ls_number_reflns_obs 18478 _refine.ls_number_reflns_all 22062 _refine.pdbx_ls_sigma_I 0 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_d_res_low 100 _refine.ls_d_res_high 2.25 _refine.ls_percent_reflns_obs 96.0 _refine.ls_R_factor_obs 0.1761000 _refine.ls_R_factor_all 0.1978000 _refine.ls_R_factor_R_work 0.1967000 _refine.ls_R_factor_R_free 0.2383000 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 1665 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 33 _refine.aniso_B[1][1] 0.9624 _refine.aniso_B[2][2] 0 _refine.aniso_B[3][3] 0 _refine.aniso_B[1][2] 3.0606 _refine.aniso_B[1][3] -0.4784 _refine.aniso_B[2][3] -0.5418 _refine.solvent_model_details 'Babinet (SHELXL)' _refine.solvent_model_param_ksol 0.879 _refine.solvent_model_param_bsol 250.018 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;Refinement on unmerged Friedel opposites (due to small but tangible selenium anomalous contribution). Refinement by conjugated-gradient least-squares. Selenomethionine restraints derived from Hic-Up. Two monomers were restrained by NCS (1,4-restraints generated by NCSY in SHELXL). Removal of the NCS restraints does not result in significant changes in the model. The structure was refined using home data (wavelength 1.5418). ; _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model 'isotropic individual atomic B factors' _refine.pdbx_stereochemistry_target_values Engh-Huber _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details random _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1HY5 _refine_analyze.Luzzati_coordinate_error_obs 0.22 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1776 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 67 _refine_hist.number_atoms_total 1843 _refine_hist.d_res_high 2.25 _refine_hist.d_res_low 100 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function s_angle_d 0.027 ? ? ? 'X-RAY DIFFRACTION' ? s_bond_d 0.007 ? ? ? 'X-RAY DIFFRACTION' ? s_from_restr_planes 0.02 ? ? ? 'X-RAY DIFFRACTION' ? s_non_zero_chiral_vol 0.031 ? ? ? 'X-RAY DIFFRACTION' ? s_anti_bump_dis_restr 0.007 ? ? ? 'X-RAY DIFFRACTION' ? # _pdbx_refine.entry_id 1HY5 _pdbx_refine.R_factor_all_no_cutoff ? _pdbx_refine.R_factor_obs_no_cutoff 0.1960000 _pdbx_refine.free_R_factor_no_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff 8.0 _pdbx_refine.free_R_val_test_set_ct_no_cutoff ? _pdbx_refine.R_factor_all_4sig_cutoff 0.1740000 _pdbx_refine.R_factor_obs_4sig_cutoff ? _pdbx_refine.free_R_factor_4sig_cutoff 0.2130000 _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff ? _pdbx_refine.number_reflns_obs_4sig_cutoff ? _pdbx_refine.number_reflns_obs_no_cutoff ? _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.free_R_error_no_cutoff ? # _struct.entry_id 1HY5 _struct.title 'CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF YOPE-YERSINIA PESTIS GAP EFFECTOR PROTEIN.' _struct.pdbx_descriptor 'OUTER MEMBRANE VIRULENCE PROTEIN YOPE' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1HY5 _struct_keywords.pdbx_keywords TOXIN _struct_keywords.text 'four helix up-down-up-down antiparallel bundle, beta hairpin, arginine finger, toxin' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # loop_ _struct_biol.id _struct_biol.details _struct_biol.pdbx_parent_biol_id 1 'biological assembly is a monomer - crystal AU contains a dimer. RMSD of the Ca positions within the dimer is 0.34 A' ? 2 ? ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 12 ? ASN A 33 ? SER A 1101 ASN A 1122 1 ? 22 HELX_P HELX_P2 2 ASP A 36 ? HIS A 44 ? ASP A 1125 HIS A 1133 1 ? 9 HELX_P HELX_P3 3 ASN A 43 ? ALA A 48 ? ASN A 1132 ALA A 1137 1 ? 6 HELX_P HELX_P4 4 GLY A 52 ? CYS A 68 ? GLY A 1141 CYS A 1157 1 ? 17 HELX_P HELX_P5 5 GLY A 69 ? THR A 82 ? GLY A 1158 THR A 1171 1 ? 14 HELX_P HELX_P6 6 SER A 90 ? THR A 94 ? SER A 1179 THR A 1183 5 ? 5 HELX_P HELX_P7 7 GLY A 97 ? ALA A 104 ? GLY A 1186 ALA A 1193 1 ? 8 HELX_P HELX_P8 8 LEU A 109 ? MSE A 123 ? LEU A 1198 MSE A 1212 1 ? 15 HELX_P HELX_P9 9 MSE A 123 ? MSE A 130 ? MSE A 1212 MSE A 1219 1 ? 8 HELX_P HELX_P10 10 SER B 12 ? SER B 34 ? SER B 2101 SER B 2123 1 ? 23 HELX_P HELX_P11 11 ASP B 36 ? HIS B 44 ? ASP B 2125 HIS B 2133 1 ? 9 HELX_P HELX_P12 12 ASN B 43 ? ALA B 48 ? ASN B 2132 ALA B 2137 1 ? 6 HELX_P HELX_P13 13 GLY B 52 ? CYS B 68 ? GLY B 2141 CYS B 2157 1 ? 17 HELX_P HELX_P14 14 GLY B 69 ? ASN B 81 ? GLY B 2158 ASN B 2170 1 ? 13 HELX_P HELX_P15 15 SER B 90 ? TRP B 92 ? SER B 2179 TRP B 2181 5 ? 3 HELX_P HELX_P16 16 GLY B 97 ? SER B 105 ? GLY B 2186 SER B 2194 1 ? 9 HELX_P HELX_P17 17 LEU B 109 ? LEU B 129 ? LEU B 2198 LEU B 2218 1 ? 21 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A TYR 28 C ? ? ? 1_555 A MSE 29 N ? ? A TYR 1117 A MSE 1118 1_555 ? ? ? ? ? ? ? 1.329 ? covale2 covale ? ? A MSE 29 C ? ? ? 1_555 A GLN 30 N ? ? A MSE 1118 A GLN 1119 1_555 ? ? ? ? ? ? ? 1.331 ? covale3 covale ? ? A GLU 38 C ? ? ? 1_555 A MSE 39 N ? ? A GLU 1127 A MSE 1128 1_555 ? ? ? ? ? ? ? 1.330 ? covale4 covale ? ? A MSE 39 C ? ? ? 1_555 A LEU 40 N ? ? A MSE 1128 A LEU 1129 1_555 ? ? ? ? ? ? ? 1.341 ? covale5 covale ? ? A LEU 64 C ? ? ? 1_555 A MSE 65 N ? ? A LEU 1153 A MSE 1154 1_555 ? ? ? ? ? ? ? 1.327 ? covale6 covale ? ? A MSE 65 C ? ? ? 1_555 A GLN 66 N ? ? A MSE 1154 A GLN 1155 1_555 ? ? ? ? ? ? ? 1.336 ? covale7 covale ? ? A GLN 122 C ? ? ? 1_555 A MSE 123 N ? ? A GLN 1211 A MSE 1212 1_555 ? ? ? ? ? ? ? 1.321 ? covale8 covale ? ? A MSE 123 C ? ? ? 1_555 A GLN 124 N ? ? A MSE 1212 A GLN 1213 1_555 ? ? ? ? ? ? ? 1.334 ? covale9 covale ? ? A LEU 129 C ? ? ? 1_555 A MSE 130 N ? ? A LEU 1218 A MSE 1219 1_555 ? ? ? ? ? ? ? 1.333 ? covale10 covale ? ? B TYR 28 C ? ? ? 1_555 B MSE 29 N ? ? B TYR 2117 B MSE 2118 1_555 ? ? ? ? ? ? ? 1.319 ? covale11 covale ? ? B MSE 29 C ? ? ? 1_555 B GLN 30 N ? ? B MSE 2118 B GLN 2119 1_555 ? ? ? ? ? ? ? 1.344 ? covale12 covale ? ? B GLU 38 C ? ? ? 1_555 B MSE 39 N ? ? B GLU 2127 B MSE 2128 1_555 ? ? ? ? ? ? ? 1.331 ? covale13 covale ? ? B MSE 39 C ? ? ? 1_555 B LEU 40 N ? ? B MSE 2128 B LEU 2129 1_555 ? ? ? ? ? ? ? 1.342 ? covale14 covale ? ? B LEU 64 C ? ? ? 1_555 B MSE 65 N ? ? B LEU 2153 B MSE 2154 1_555 ? ? ? ? ? ? ? 1.327 ? covale15 covale ? ? B MSE 65 C ? ? ? 1_555 B GLN 66 N ? ? B MSE 2154 B GLN 2155 1_555 ? ? ? ? ? ? ? 1.336 ? covale16 covale ? ? B GLN 122 C ? ? ? 1_555 B MSE 123 N ? ? B GLN 2211 B MSE 2212 1_555 ? ? ? ? ? ? ? 1.326 ? covale17 covale ? ? B MSE 123 C ? ? ? 1_555 B GLN 124 N ? ? B MSE 2212 B GLN 2213 1_555 ? ? ? ? ? ? ? 1.340 ? covale18 covale ? ? B LEU 129 C ? ? ? 1_555 B MSE 130 N ? ? B LEU 2218 B MSE 2219 1_555 ? ? ? ? ? ? ? 1.327 ? covale19 covale ? ? B MSE 130 C ? ? ? 1_555 B HIS 131 N ? ? B MSE 2219 B HIS 2220 1_555 ? ? ? ? ? ? ? 1.335 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 PRO A 83 ? VAL A 84 ? PRO A 1172 VAL A 1173 A 2 ILE A 87 ? PRO A 88 ? ILE A 1176 PRO A 1177 B 1 PRO B 83 ? VAL B 84 ? PRO B 2172 VAL B 2173 B 2 ILE B 87 ? PRO B 88 ? ILE B 2176 PRO B 2177 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 84 ? N VAL A 1173 O ILE A 87 ? O ILE A 1176 B 1 2 N VAL B 84 ? N VAL B 2173 O ILE B 87 ? O ILE B 2176 # _database_PDB_matrix.entry_id 1HY5 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1HY5 _atom_sites.fract_transf_matrix[1][1] 0.015951 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.006791 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013893 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.017338 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 1090 ? ? ? A . n A 1 2 PRO 2 1091 ? ? ? A . n A 1 3 THR 3 1092 ? ? ? A . n A 1 4 PRO 4 1093 ? ? ? A . n A 1 5 ALA 5 1094 ? ? ? A . n A 1 6 GLN 6 1095 ? ? ? A . n A 1 7 MSE 7 1096 ? ? ? A . n A 1 8 PRO 8 1097 ? ? ? A . n A 1 9 SER 9 1098 ? ? ? A . n A 1 10 PRO 10 1099 ? ? ? A . n A 1 11 THR 11 1100 1100 THR THR A . n A 1 12 SER 12 1101 1101 SER SER A . n A 1 13 PHE 13 1102 1102 PHE PHE A . n A 1 14 SER 14 1103 1103 SER SER A . n A 1 15 ASP 15 1104 1104 ASP ASP A . n A 1 16 SER 16 1105 1105 SER SER A . n A 1 17 ILE 17 1106 1106 ILE ILE A . n A 1 18 LYS 18 1107 1107 LYS LYS A . n A 1 19 GLN 19 1108 1108 GLN GLN A . n A 1 20 LEU 20 1109 1109 LEU LEU A . n A 1 21 ALA 21 1110 1110 ALA ALA A . n A 1 22 ALA 22 1111 1111 ALA ALA A . n A 1 23 GLU 23 1112 1112 GLU GLU A . n A 1 24 THR 24 1113 1113 THR THR A . n A 1 25 LEU 25 1114 1114 LEU LEU A . n A 1 26 PRO 26 1115 1115 PRO PRO A . n A 1 27 LYS 27 1116 1116 LYS LYS A . n A 1 28 TYR 28 1117 1117 TYR TYR A . n A 1 29 MSE 29 1118 1118 MSE MSE A . n A 1 30 GLN 30 1119 1119 GLN GLN A . n A 1 31 GLN 31 1120 1120 GLN GLN A . n A 1 32 LEU 32 1121 1121 LEU LEU A . n A 1 33 ASN 33 1122 1122 ASN ASN A . n A 1 34 SER 34 1123 1123 SER SER A . n A 1 35 LEU 35 1124 1124 LEU LEU A . n A 1 36 ASP 36 1125 1125 ASP ASP A . n A 1 37 ALA 37 1126 1126 ALA ALA A . n A 1 38 GLU 38 1127 1127 GLU GLU A . n A 1 39 MSE 39 1128 1128 MSE MSE A . n A 1 40 LEU 40 1129 1129 LEU LEU A . n A 1 41 GLN 41 1130 1130 GLN GLN A . n A 1 42 LYS 42 1131 1131 LYS LYS A . n A 1 43 ASN 43 1132 1132 ASN ASN A . n A 1 44 HIS 44 1133 1133 HIS HIS A . n A 1 45 ASP 45 1134 1134 ASP ASP A . n A 1 46 GLN 46 1135 1135 GLN GLN A . n A 1 47 PHE 47 1136 1136 PHE PHE A . n A 1 48 ALA 48 1137 1137 ALA ALA A . n A 1 49 THR 49 1138 1138 THR THR A . n A 1 50 GLY 50 1139 1139 GLY GLY A . n A 1 51 SER 51 1140 1140 SER SER A . n A 1 52 GLY 52 1141 1141 GLY GLY A . n A 1 53 PRO 53 1142 1142 PRO PRO A . n A 1 54 LEU 54 1143 1143 LEU LEU A . n A 1 55 ARG 55 1144 1144 ARG ARG A . n A 1 56 GLY 56 1145 1145 GLY GLY A . n A 1 57 SER 57 1146 1146 SER SER A . n A 1 58 ILE 58 1147 1147 ILE ILE A . n A 1 59 THR 59 1148 1148 THR THR A . n A 1 60 GLN 60 1149 1149 GLN GLN A . n A 1 61 CYS 61 1150 1150 CYS CYS A . n A 1 62 GLN 62 1151 1151 GLN GLN A . n A 1 63 GLY 63 1152 1152 GLY GLY A . n A 1 64 LEU 64 1153 1153 LEU LEU A . n A 1 65 MSE 65 1154 1154 MSE MSE A . n A 1 66 GLN 66 1155 1155 GLN GLN A . n A 1 67 PHE 67 1156 1156 PHE PHE A . n A 1 68 CYS 68 1157 1157 CYS CYS A . n A 1 69 GLY 69 1158 1158 GLY GLY A . n A 1 70 GLY 70 1159 1159 GLY GLY A . n A 1 71 GLU 71 1160 1160 GLU GLU A . n A 1 72 LEU 72 1161 1161 LEU LEU A . n A 1 73 GLN 73 1162 1162 GLN GLN A . n A 1 74 ALA 74 1163 1163 ALA ALA A . n A 1 75 GLU 75 1164 1164 GLU GLU A . n A 1 76 ALA 76 1165 1165 ALA ALA A . n A 1 77 SER 77 1166 1166 SER SER A . n A 1 78 ALA 78 1167 1167 ALA ALA A . n A 1 79 ILE 79 1168 1168 ILE ILE A . n A 1 80 LEU 80 1169 1169 LEU LEU A . n A 1 81 ASN 81 1170 1170 ASN ASN A . n A 1 82 THR 82 1171 1171 THR THR A . n A 1 83 PRO 83 1172 1172 PRO PRO A . n A 1 84 VAL 84 1173 1173 VAL VAL A . n A 1 85 CYS 85 1174 1174 CYS CYS A . n A 1 86 GLY 86 1175 1175 GLY GLY A . n A 1 87 ILE 87 1176 1176 ILE ILE A . n A 1 88 PRO 88 1177 1177 PRO PRO A . n A 1 89 PHE 89 1178 1178 PHE PHE A . n A 1 90 SER 90 1179 1179 SER SER A . n A 1 91 GLN 91 1180 1180 GLN GLN A . n A 1 92 TRP 92 1181 1181 TRP TRP A . n A 1 93 GLY 93 1182 1182 GLY GLY A . n A 1 94 THR 94 1183 1183 THR THR A . n A 1 95 ILE 95 1184 1184 ILE ILE A . n A 1 96 GLY 96 1185 1185 GLY GLY A . n A 1 97 GLY 97 1186 1186 GLY GLY A . n A 1 98 ALA 98 1187 1187 ALA ALA A . n A 1 99 ALA 99 1188 1188 ALA ALA A . n A 1 100 SER 100 1189 1189 SER SER A . n A 1 101 ALA 101 1190 1190 ALA ALA A . n A 1 102 TYR 102 1191 1191 TYR TYR A . n A 1 103 VAL 103 1192 1192 VAL VAL A . n A 1 104 ALA 104 1193 1193 ALA ALA A . n A 1 105 SER 105 1194 1194 SER SER A . n A 1 106 GLY 106 1195 1195 GLY GLY A . n A 1 107 VAL 107 1196 1196 VAL VAL A . n A 1 108 ASP 108 1197 1197 ASP ASP A . n A 1 109 LEU 109 1198 1198 LEU LEU A . n A 1 110 THR 110 1199 1199 THR THR A . n A 1 111 GLN 111 1200 1200 GLN GLN A . n A 1 112 ALA 112 1201 1201 ALA ALA A . n A 1 113 ALA 113 1202 1202 ALA ALA A . n A 1 114 ASN 114 1203 1203 ASN ASN A . n A 1 115 GLU 115 1204 1204 GLU GLU A . n A 1 116 ILE 116 1205 1205 ILE ILE A . n A 1 117 LYS 117 1206 1206 LYS LYS A . n A 1 118 GLY 118 1207 1207 GLY GLY A . n A 1 119 LEU 119 1208 1208 LEU LEU A . n A 1 120 ALA 120 1209 1209 ALA ALA A . n A 1 121 GLN 121 1210 1210 GLN GLN A . n A 1 122 GLN 122 1211 1211 GLN GLN A . n A 1 123 MSE 123 1212 1212 MSE MSE A . n A 1 124 GLN 124 1213 1213 GLN GLN A . n A 1 125 LYS 125 1214 1214 LYS LYS A . n A 1 126 LEU 126 1215 1215 LEU LEU A . n A 1 127 LEU 127 1216 1216 LEU LEU A . n A 1 128 SER 128 1217 1217 SER SER A . n A 1 129 LEU 129 1218 1218 LEU LEU A . n A 1 130 MSE 130 1219 1219 MSE MSE A . n A 1 131 HIS 131 1220 ? ? ? A . n A 1 132 HIS 132 1221 ? ? ? A . n A 1 133 HIS 133 1222 ? ? ? A . n A 1 134 HIS 134 1223 ? ? ? A . n A 1 135 HIS 135 1224 ? ? ? A . n A 1 136 HIS 136 1225 ? ? ? A . n B 1 1 ALA 1 2090 ? ? ? B . n B 1 2 PRO 2 2091 ? ? ? B . n B 1 3 THR 3 2092 ? ? ? B . n B 1 4 PRO 4 2093 ? ? ? B . n B 1 5 ALA 5 2094 ? ? ? B . n B 1 6 GLN 6 2095 ? ? ? B . n B 1 7 MSE 7 2096 ? ? ? B . n B 1 8 PRO 8 2097 ? ? ? B . n B 1 9 SER 9 2098 ? ? ? B . n B 1 10 PRO 10 2099 ? ? ? B . n B 1 11 THR 11 2100 2100 THR THR B . n B 1 12 SER 12 2101 2101 SER SER B . n B 1 13 PHE 13 2102 2102 PHE PHE B . n B 1 14 SER 14 2103 2103 SER SER B . n B 1 15 ASP 15 2104 2104 ASP ASP B . n B 1 16 SER 16 2105 2105 SER SER B . n B 1 17 ILE 17 2106 2106 ILE ILE B . n B 1 18 LYS 18 2107 2107 LYS LYS B . n B 1 19 GLN 19 2108 2108 GLN GLN B . n B 1 20 LEU 20 2109 2109 LEU LEU B . n B 1 21 ALA 21 2110 2110 ALA ALA B . n B 1 22 ALA 22 2111 2111 ALA ALA B . n B 1 23 GLU 23 2112 2112 GLU GLU B . n B 1 24 THR 24 2113 2113 THR THR B . n B 1 25 LEU 25 2114 2114 LEU LEU B . n B 1 26 PRO 26 2115 2115 PRO PRO B . n B 1 27 LYS 27 2116 2116 LYS LYS B . n B 1 28 TYR 28 2117 2117 TYR TYR B . n B 1 29 MSE 29 2118 2118 MSE MSE B . n B 1 30 GLN 30 2119 2119 GLN GLN B . n B 1 31 GLN 31 2120 2120 GLN GLN B . n B 1 32 LEU 32 2121 2121 LEU LEU B . n B 1 33 ASN 33 2122 2122 ASN ASN B . n B 1 34 SER 34 2123 2123 SER SER B . n B 1 35 LEU 35 2124 2124 LEU LEU B . n B 1 36 ASP 36 2125 2125 ASP ASP B . n B 1 37 ALA 37 2126 2126 ALA ALA B . n B 1 38 GLU 38 2127 2127 GLU GLU B . n B 1 39 MSE 39 2128 2128 MSE MSE B . n B 1 40 LEU 40 2129 2129 LEU LEU B . n B 1 41 GLN 41 2130 2130 GLN GLN B . n B 1 42 LYS 42 2131 2131 LYS LYS B . n B 1 43 ASN 43 2132 2132 ASN ASN B . n B 1 44 HIS 44 2133 2133 HIS HIS B . n B 1 45 ASP 45 2134 2134 ASP ASP B . n B 1 46 GLN 46 2135 2135 GLN GLN B . n B 1 47 PHE 47 2136 2136 PHE PHE B . n B 1 48 ALA 48 2137 2137 ALA ALA B . n B 1 49 THR 49 2138 2138 THR THR B . n B 1 50 GLY 50 2139 2139 GLY GLY B . n B 1 51 SER 51 2140 2140 SER SER B . n B 1 52 GLY 52 2141 2141 GLY GLY B . n B 1 53 PRO 53 2142 2142 PRO PRO B . n B 1 54 LEU 54 2143 2143 LEU LEU B . n B 1 55 ARG 55 2144 2144 ARG ARG B . n B 1 56 GLY 56 2145 2145 GLY GLY B . n B 1 57 SER 57 2146 2146 SER SER B . n B 1 58 ILE 58 2147 2147 ILE ILE B . n B 1 59 THR 59 2148 2148 THR THR B . n B 1 60 GLN 60 2149 2149 GLN GLN B . n B 1 61 CYS 61 2150 2150 CYS CYS B . n B 1 62 GLN 62 2151 2151 GLN GLN B . n B 1 63 GLY 63 2152 2152 GLY GLY B . n B 1 64 LEU 64 2153 2153 LEU LEU B . n B 1 65 MSE 65 2154 2154 MSE MSE B . n B 1 66 GLN 66 2155 2155 GLN GLN B . n B 1 67 PHE 67 2156 2156 PHE PHE B . n B 1 68 CYS 68 2157 2157 CYS CYS B . n B 1 69 GLY 69 2158 2158 GLY GLY B . n B 1 70 GLY 70 2159 2159 GLY GLY B . n B 1 71 GLU 71 2160 2160 GLU GLU B . n B 1 72 LEU 72 2161 2161 LEU LEU B . n B 1 73 GLN 73 2162 2162 GLN GLN B . n B 1 74 ALA 74 2163 2163 ALA ALA B . n B 1 75 GLU 75 2164 2164 GLU GLU B . n B 1 76 ALA 76 2165 2165 ALA ALA B . n B 1 77 SER 77 2166 2166 SER SER B . n B 1 78 ALA 78 2167 2167 ALA ALA B . n B 1 79 ILE 79 2168 2168 ILE ILE B . n B 1 80 LEU 80 2169 2169 LEU LEU B . n B 1 81 ASN 81 2170 2170 ASN ASN B . n B 1 82 THR 82 2171 2171 THR THR B . n B 1 83 PRO 83 2172 2172 PRO PRO B . n B 1 84 VAL 84 2173 2173 VAL VAL B . n B 1 85 CYS 85 2174 2174 CYS CYS B . n B 1 86 GLY 86 2175 2175 GLY GLY B . n B 1 87 ILE 87 2176 2176 ILE ILE B . n B 1 88 PRO 88 2177 2177 PRO PRO B . n B 1 89 PHE 89 2178 2178 PHE PHE B . n B 1 90 SER 90 2179 2179 SER SER B . n B 1 91 GLN 91 2180 2180 GLN GLN B . n B 1 92 TRP 92 2181 2181 TRP TRP B . n B 1 93 GLY 93 2182 2182 GLY GLY B . n B 1 94 THR 94 2183 2183 THR THR B . n B 1 95 ILE 95 2184 2184 ILE ILE B . n B 1 96 GLY 96 2185 2185 GLY GLY B . n B 1 97 GLY 97 2186 2186 GLY GLY B . n B 1 98 ALA 98 2187 2187 ALA ALA B . n B 1 99 ALA 99 2188 2188 ALA ALA B . n B 1 100 SER 100 2189 2189 SER SER B . n B 1 101 ALA 101 2190 2190 ALA ALA B . n B 1 102 TYR 102 2191 2191 TYR TYR B . n B 1 103 VAL 103 2192 2192 VAL VAL B . n B 1 104 ALA 104 2193 2193 ALA ALA B . n B 1 105 SER 105 2194 2194 SER SER B . n B 1 106 GLY 106 2195 2195 GLY GLY B . n B 1 107 VAL 107 2196 2196 VAL VAL B . n B 1 108 ASP 108 2197 2197 ASP ASP B . n B 1 109 LEU 109 2198 2198 LEU LEU B . n B 1 110 THR 110 2199 2199 THR THR B . n B 1 111 GLN 111 2200 2200 GLN GLN B . n B 1 112 ALA 112 2201 2201 ALA ALA B . n B 1 113 ALA 113 2202 2202 ALA ALA B . n B 1 114 ASN 114 2203 2203 ASN ASN B . n B 1 115 GLU 115 2204 2204 GLU GLU B . n B 1 116 ILE 116 2205 2205 ILE ILE B . n B 1 117 LYS 117 2206 2206 LYS LYS B . n B 1 118 GLY 118 2207 2207 GLY GLY B . n B 1 119 LEU 119 2208 2208 LEU LEU B . n B 1 120 ALA 120 2209 2209 ALA ALA B . n B 1 121 GLN 121 2210 2210 GLN GLN B . n B 1 122 GLN 122 2211 2211 GLN GLN B . n B 1 123 MSE 123 2212 2212 MSE MSE B . n B 1 124 GLN 124 2213 2213 GLN GLN B . n B 1 125 LYS 125 2214 2214 LYS LYS B . n B 1 126 LEU 126 2215 2215 LEU LEU B . n B 1 127 LEU 127 2216 2216 LEU LEU B . n B 1 128 SER 128 2217 2217 SER SER B . n B 1 129 LEU 129 2218 2218 LEU LEU B . n B 1 130 MSE 130 2219 2219 MSE MSE B . n B 1 131 HIS 131 2220 2220 HIS HIS B . n B 1 132 HIS 132 2221 ? ? ? B . n B 1 133 HIS 133 2222 ? ? ? B . n B 1 134 HIS 134 2223 ? ? ? B . n B 1 135 HIS 135 2224 ? ? ? B . n B 1 136 HIS 136 2225 ? ? ? B . n # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 29 A MSE 1118 ? MET SELENOMETHIONINE 2 A MSE 39 A MSE 1128 ? MET SELENOMETHIONINE 3 A MSE 65 A MSE 1154 ? MET SELENOMETHIONINE 4 A MSE 123 A MSE 1212 ? MET SELENOMETHIONINE 5 A MSE 130 A MSE 1219 ? MET SELENOMETHIONINE 6 B MSE 29 B MSE 2118 ? MET SELENOMETHIONINE 7 B MSE 39 B MSE 2128 ? MET SELENOMETHIONINE 8 B MSE 65 B MSE 2154 ? MET SELENOMETHIONINE 9 B MSE 123 B MSE 2212 ? MET SELENOMETHIONINE 10 B MSE 130 B MSE 2219 ? MET SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C 2 1 B,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2002-02-06 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SOLVE phasing . ? 1 SHELXL-97 refinement . ? 2 DENZO 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CA _pdbx_validate_rmsd_angle.auth_asym_id_1 B _pdbx_validate_rmsd_angle.auth_comp_id_1 LEU _pdbx_validate_rmsd_angle.auth_seq_id_1 2215 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CB _pdbx_validate_rmsd_angle.auth_asym_id_2 B _pdbx_validate_rmsd_angle.auth_comp_id_2 LEU _pdbx_validate_rmsd_angle.auth_seq_id_2 2215 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 CG _pdbx_validate_rmsd_angle.auth_asym_id_3 B _pdbx_validate_rmsd_angle.auth_comp_id_3 LEU _pdbx_validate_rmsd_angle.auth_seq_id_3 2215 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 129.91 _pdbx_validate_rmsd_angle.angle_target_value 115.30 _pdbx_validate_rmsd_angle.angle_deviation 14.61 _pdbx_validate_rmsd_angle.angle_standard_deviation 2.30 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 1122 ? ? -59.78 -9.09 2 1 ALA A 1193 ? ? -80.38 41.16 3 1 SER B 2101 ? ? -31.33 141.59 4 1 LEU B 2198 ? ? -78.77 29.85 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ALA 1090 ? A ALA 1 2 1 Y 1 A PRO 1091 ? A PRO 2 3 1 Y 1 A THR 1092 ? A THR 3 4 1 Y 1 A PRO 1093 ? A PRO 4 5 1 Y 1 A ALA 1094 ? A ALA 5 6 1 Y 1 A GLN 1095 ? A GLN 6 7 1 Y 1 A MSE 1096 ? A MSE 7 8 1 Y 1 A PRO 1097 ? A PRO 8 9 1 Y 1 A SER 1098 ? A SER 9 10 1 Y 1 A PRO 1099 ? A PRO 10 11 1 Y 1 A HIS 1220 ? A HIS 131 12 1 Y 1 A HIS 1221 ? A HIS 132 13 1 Y 1 A HIS 1222 ? A HIS 133 14 1 Y 1 A HIS 1223 ? A HIS 134 15 1 Y 1 A HIS 1224 ? A HIS 135 16 1 Y 1 A HIS 1225 ? A HIS 136 17 1 Y 1 B ALA 2090 ? B ALA 1 18 1 Y 1 B PRO 2091 ? B PRO 2 19 1 Y 1 B THR 2092 ? B THR 3 20 1 Y 1 B PRO 2093 ? B PRO 4 21 1 Y 1 B ALA 2094 ? B ALA 5 22 1 Y 1 B GLN 2095 ? B GLN 6 23 1 Y 1 B MSE 2096 ? B MSE 7 24 1 Y 1 B PRO 2097 ? B PRO 8 25 1 Y 1 B SER 2098 ? B SER 9 26 1 Y 1 B PRO 2099 ? B PRO 10 27 1 Y 1 B HIS 2221 ? B HIS 132 28 1 Y 1 B HIS 2222 ? B HIS 133 29 1 Y 1 B HIS 2223 ? B HIS 134 30 1 Y 1 B HIS 2224 ? B HIS 135 31 1 Y 1 B HIS 2225 ? B HIS 136 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 3004 3004 HOH HOH A . C 2 HOH 2 3007 3007 HOH HOH A . C 2 HOH 3 3008 3008 HOH HOH A . C 2 HOH 4 3010 3010 HOH HOH A . C 2 HOH 5 3011 3011 HOH HOH A . C 2 HOH 6 3015 3015 HOH HOH A . C 2 HOH 7 3016 3016 HOH HOH A . C 2 HOH 8 3017 3017 HOH HOH A . C 2 HOH 9 3020 3020 HOH HOH A . C 2 HOH 10 3021 3021 HOH HOH A . C 2 HOH 11 3023 3023 HOH HOH A . C 2 HOH 12 3025 3025 HOH HOH A . C 2 HOH 13 3027 3027 HOH HOH A . C 2 HOH 14 3028 3028 HOH HOH A . C 2 HOH 15 3035 3035 HOH HOH A . C 2 HOH 16 3036 3036 HOH HOH A . C 2 HOH 17 3040 3040 HOH HOH A . C 2 HOH 18 3041 3041 HOH HOH A . C 2 HOH 19 3042 3042 HOH HOH A . C 2 HOH 20 3046 3046 HOH HOH A . C 2 HOH 21 3048 3048 HOH HOH A . C 2 HOH 22 3049 3049 HOH HOH A . C 2 HOH 23 3050 3050 HOH HOH A . C 2 HOH 24 3051 3051 HOH HOH A . C 2 HOH 25 3052 3052 HOH HOH A . C 2 HOH 26 3054 3054 HOH HOH A . C 2 HOH 27 3055 3055 HOH HOH A . C 2 HOH 28 3059 3059 HOH HOH A . C 2 HOH 29 3062 3062 HOH HOH A . D 2 HOH 1 3001 3001 HOH HOH B . D 2 HOH 2 3002 3002 HOH HOH B . D 2 HOH 3 3003 3003 HOH HOH B . D 2 HOH 4 3005 3005 HOH HOH B . D 2 HOH 5 3006 3006 HOH HOH B . D 2 HOH 6 3009 3009 HOH HOH B . D 2 HOH 7 3012 3012 HOH HOH B . D 2 HOH 8 3013 3013 HOH HOH B . D 2 HOH 9 3014 3014 HOH HOH B . D 2 HOH 10 3018 3018 HOH HOH B . D 2 HOH 11 3019 3019 HOH HOH B . D 2 HOH 12 3022 3022 HOH HOH B . D 2 HOH 13 3024 3024 HOH HOH B . D 2 HOH 14 3026 3026 HOH HOH B . D 2 HOH 15 3029 3029 HOH HOH B . D 2 HOH 16 3030 3030 HOH HOH B . D 2 HOH 17 3031 3031 HOH HOH B . D 2 HOH 18 3032 3032 HOH HOH B . D 2 HOH 19 3033 3033 HOH HOH B . D 2 HOH 20 3034 3034 HOH HOH B . D 2 HOH 21 3037 3037 HOH HOH B . D 2 HOH 22 3038 3038 HOH HOH B . D 2 HOH 23 3039 3039 HOH HOH B . D 2 HOH 24 3043 3043 HOH HOH B . D 2 HOH 25 3044 3044 HOH HOH B . D 2 HOH 26 3045 3045 HOH HOH B . D 2 HOH 27 3047 3047 HOH HOH B . D 2 HOH 28 3053 3053 HOH HOH B . D 2 HOH 29 3056 3056 HOH HOH B . D 2 HOH 30 3057 3057 HOH HOH B . D 2 HOH 31 3058 3058 HOH HOH B . D 2 HOH 32 3060 3060 HOH HOH B . D 2 HOH 33 3061 3061 HOH HOH B . D 2 HOH 34 3063 3063 HOH HOH B . D 2 HOH 35 3064 3064 HOH HOH B . D 2 HOH 36 3065 3065 HOH HOH B . D 2 HOH 37 3066 3066 HOH HOH B . D 2 HOH 38 3067 3067 HOH HOH B . #