HEADER HYDROLASE 18-JAN-01 1HY7 TITLE A CARBOXYLIC ACID BASED INHIBITOR IN COMPLEX WITH MMP3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: STROMELYSIN-1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CATALYTIC DOMAIN, RESIDUES 100-272; COMPND 5 SYNONYM: MMP-3; COMPND 6 EC: 3.4.24.17; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 CELL: FIBROBLAST; SOURCE 6 GENE: MMP3; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MIXED ALPHA BETA STRUCTURE, ZINC PROTEASE, INHIBITED, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.G.NATCHUS,R.G.BOOKLAND,M.J.LAUFERSWEILER,S.PIKUL,N.G.ALMSTEAD,B.DE, AUTHOR 2 M.J.JANUSZ,L.C.HSIEH,F.GU,M.E.POKROSS,V.S.PATEL,S.M.GARVER,S.X.PENG, AUTHOR 3 T.M.BRANCH,S.L.KING,T.R.BAKER,D.J.FOLTZ,G.E.MIELING REVDAT 7 07-FEB-24 1HY7 1 REMARK LINK REVDAT 6 07-FEB-18 1HY7 1 REMARK REVDAT 5 04-OCT-17 1HY7 1 REMARK REVDAT 4 13-JUL-11 1HY7 1 VERSN REVDAT 3 24-FEB-09 1HY7 1 VERSN REVDAT 2 24-JUL-02 1HY7 1 JRNL REVDAT 1 18-JAN-02 1HY7 0 JRNL AUTH M.G.NATCHUS,R.G.BOOKLAND,M.J.LAUFERSWEILER,S.PIKUL, JRNL AUTH 2 N.G.ALMSTEAD,B.DE,M.J.JANUSZ,L.C.HSIEH,F.GU,M.E.POKROSS, JRNL AUTH 3 V.S.PATEL,S.M.GARVER,S.X.PENG,T.M.BRANCH,S.L.KING,T.R.BAKER, JRNL AUTH 4 D.J.FOLTZ,G.E.MIELING JRNL TITL DEVELOPMENT OF NEW CARBOXYLIC ACID-BASED MMP INHIBITORS JRNL TITL 2 DERIVED FROM FUNCTIONALIZED PROPARGYLGLYCINES. JRNL REF J.MED.CHEM. V. 44 1060 2001 JRNL REFN ISSN 0022-2623 JRNL PMID 11297453 JRNL DOI 10.1021/JM000477L REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 63.25 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 46098 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2529 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2647 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 38 REMARK 3 SOLVENT ATOMS : 336 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.53 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.53000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 1.00000 REMARK 3 B13 (A**2) : -0.50000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.016 ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.038 ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.796 ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: USED MAXIMUM LIKELYHOOD PROCEDURES REMARK 4 REMARK 4 1HY7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JAN-01. REMARK 100 THE DEPOSITION ID IS D_1000012680. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-MAR-00 REMARK 200 TEMPERATURE (KELVIN) : 173 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47986 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 17.398 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 78.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.29000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: FFT, CCP4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG6000, SODIUM CHLORIDE, MAGNESIUM REMARK 280 CHLORIDE, TRIS, PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 18.95900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.90050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.02950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.90050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 18.95900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.02950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A MONOMER CONSTRUCTED FROM CHAIN REMARK 300 A OR CHAIN B REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 2500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -135.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -18.95900 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 78.05900 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 -52.90050 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TYR A 223 REMARK 465 HIS A 224 REMARK 465 SER A 225 REMARK 465 LEU A 226 REMARK 465 THR A 227 REMARK 465 ASP A 228 REMARK 465 ASP A 251 REMARK 465 SER A 252 REMARK 465 PRO A 253 REMARK 465 GLU A 254 REMARK 465 THR A 255 REMARK 465 HIS B 724 REMARK 465 SER B 725 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG A 84 O GLN B 743 2464 1.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 130 CB - CG - CD1 ANGL. DEV. = 11.2 DEGREES REMARK 500 ARG B 600 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ASP B 641 CB - CG - OD2 ANGL. DEV. = 6.7 DEGREES REMARK 500 ASP B 751 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 149 -128.77 43.62 REMARK 500 HIS A 151 24.25 -143.40 REMARK 500 ASN A 162 -113.47 65.28 REMARK 500 ASP A 189 -157.99 -114.40 REMARK 500 ILE B 589 63.43 39.00 REMARK 500 ARG B 649 -129.18 46.63 REMARK 500 HIS B 651 23.14 -143.56 REMARK 500 ASP B 653 -169.80 -129.29 REMARK 500 ASN B 662 -124.05 53.89 REMARK 500 ASP B 689 -154.14 -119.87 REMARK 500 PHE B 710 -163.30 -106.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 304 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 107 OD1 REMARK 620 2 ASP A 107 OD2 50.9 REMARK 620 3 ASP A 182 OD1 91.6 84.4 REMARK 620 4 ASP A 182 O 156.3 148.2 80.4 REMARK 620 5 GLU A 184 O 122.1 76.1 106.3 81.6 REMARK 620 6 HOH A 326 O 80.2 130.2 88.5 77.4 151.9 REMARK 620 7 HOH A 341 O 85.2 99.6 171.4 99.4 82.1 83.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 305 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 141 O REMARK 620 2 GLY A 173 O 173.1 REMARK 620 3 ASN A 175 O 101.2 85.1 REMARK 620 4 ASP A 177 OD1 85.2 97.3 94.6 REMARK 620 5 HOH A 306 O 86.4 91.7 81.6 169.8 REMARK 620 6 HOH A 307 O 92.7 80.6 160.3 100.5 85.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 151 NE2 REMARK 620 2 ASP A 153 OD2 109.4 REMARK 620 3 HIS A 166 NE2 115.7 113.3 REMARK 620 4 HIS A 179 ND1 107.4 98.4 111.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 303 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 158 OD1 REMARK 620 2 GLY A 159 O 88.7 REMARK 620 3 GLY A 161 O 88.3 88.8 REMARK 620 4 VAL A 163 O 89.4 175.8 87.4 REMARK 620 5 ASP A 181 OD2 91.5 89.2 178.0 94.6 REMARK 620 6 GLU A 184 OE2 176.9 93.9 90.0 87.9 90.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 201 NE2 REMARK 620 2 HIS A 205 NE2 101.7 REMARK 620 3 HIS A 211 NE2 114.6 101.5 REMARK 620 4 THR B 755 OXT 132.3 96.2 104.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 805 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 12 O REMARK 620 2 HOH B 64 O 85.6 REMARK 620 3 ASP B 641 O 84.8 89.8 REMARK 620 4 GLY B 673 O 91.5 81.8 171.0 REMARK 620 5 ASN B 675 O 83.6 163.3 101.8 85.8 REMARK 620 6 ASP B 677 OD1 170.2 98.9 86.5 97.7 93.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 804 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 20 O REMARK 620 2 HOH B 52 O 82.5 REMARK 620 3 ASP B 607 OD2 99.5 129.3 REMARK 620 4 ASP B 607 OD1 82.4 78.9 51.7 REMARK 620 5 ASP B 682 O 98.5 79.2 148.1 157.7 REMARK 620 6 ASP B 682 OD1 172.9 90.5 85.1 96.4 79.9 REMARK 620 7 GLU B 684 O 80.7 151.2 76.8 121.6 80.4 105.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 802 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 651 NE2 REMARK 620 2 ASP B 653 OD2 108.0 REMARK 620 3 HIS B 666 NE2 117.1 112.5 REMARK 620 4 HIS B 679 ND1 107.5 97.2 112.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 803 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 658 OD1 REMARK 620 2 GLY B 659 O 86.7 REMARK 620 3 GLY B 661 O 92.1 85.4 REMARK 620 4 VAL B 663 O 92.1 177.4 92.3 REMARK 620 5 ASP B 681 OD2 89.4 91.2 176.3 91.0 REMARK 620 6 GLU B 684 OE2 178.7 93.9 89.1 87.4 89.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 801 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 701 NE2 REMARK 620 2 HIS B 705 NE2 85.8 REMARK 620 3 HIS B 711 NE2 121.0 114.8 REMARK 620 4 MBS B 901 O2 111.6 134.5 92.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 804 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 805 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MBS B 901 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1G49 RELATED DB: PDB REMARK 900 A CARBOXYLIC ACID BASED INHIBITOR IN COMPLEX WITH MMP3 REMARK 900 RELATED ID: 1CQR RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE STROMELYSIN CATALYTIC DOMAIN AT 2.0 A REMARK 900 RESOLUTION REMARK 900 RELATED ID: 1D5J RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MMP3 COMPLEXED WITH A THIAZEPINE BASED REMARK 900 INHIBITOR REMARK 900 RELATED ID: 1D7X RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MMP3 COMPLEXED WITH A MODIFIED PROLINE REMARK 900 SCAFFOLD BASED INHIBITOR REMARK 900 RELATED ID: 1D8F RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MMP3 COMPLEXED WITH A PIPERAZINE BASED REMARK 900 INHIBITOR REMARK 900 RELATED ID: 1D8M RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MMP3 COMPLEXED WITH A HETEROCYCLE- BASED REMARK 900 INHIBITOR DBREF 1HY7 A 83 255 UNP P08254 MMP3_HUMAN 100 272 DBREF 1HY7 B 583 755 UNP P08254 MMP3_HUMAN 100 272 SEQRES 1 A 173 PHE ARG THR PHE PRO GLY ILE PRO LYS TRP ARG LYS THR SEQRES 2 A 173 HIS LEU THR TYR ARG ILE VAL ASN TYR THR PRO ASP LEU SEQRES 3 A 173 PRO LYS ASP ALA VAL ASP SER ALA VAL GLU LYS ALA LEU SEQRES 4 A 173 LYS VAL TRP GLU GLU VAL THR PRO LEU THR PHE SER ARG SEQRES 5 A 173 LEU TYR GLU GLY GLU ALA ASP ILE MET ILE SER PHE ALA SEQRES 6 A 173 VAL ARG GLU HIS GLY ASP PHE TYR PRO PHE ASP GLY PRO SEQRES 7 A 173 GLY ASN VAL LEU ALA HIS ALA TYR ALA PRO GLY PRO GLY SEQRES 8 A 173 ILE ASN GLY ASP ALA HIS PHE ASP ASP ASP GLU GLN TRP SEQRES 9 A 173 THR LYS ASP THR THR GLY THR ASN LEU PHE LEU VAL ALA SEQRES 10 A 173 ALA HIS GLU ILE GLY HIS SER LEU GLY LEU PHE HIS SER SEQRES 11 A 173 ALA ASN THR GLU ALA LEU MET TYR PRO LEU TYR HIS SER SEQRES 12 A 173 LEU THR ASP LEU THR ARG PHE ARG LEU SER GLN ASP ASP SEQRES 13 A 173 ILE ASN GLY ILE GLN SER LEU TYR GLY PRO PRO PRO ASP SEQRES 14 A 173 SER PRO GLU THR SEQRES 1 B 173 PHE ARG THR PHE PRO GLY ILE PRO LYS TRP ARG LYS THR SEQRES 2 B 173 HIS LEU THR TYR ARG ILE VAL ASN TYR THR PRO ASP LEU SEQRES 3 B 173 PRO LYS ASP ALA VAL ASP SER ALA VAL GLU LYS ALA LEU SEQRES 4 B 173 LYS VAL TRP GLU GLU VAL THR PRO LEU THR PHE SER ARG SEQRES 5 B 173 LEU TYR GLU GLY GLU ALA ASP ILE MET ILE SER PHE ALA SEQRES 6 B 173 VAL ARG GLU HIS GLY ASP PHE TYR PRO PHE ASP GLY PRO SEQRES 7 B 173 GLY ASN VAL LEU ALA HIS ALA TYR ALA PRO GLY PRO GLY SEQRES 8 B 173 ILE ASN GLY ASP ALA HIS PHE ASP ASP ASP GLU GLN TRP SEQRES 9 B 173 THR LYS ASP THR THR GLY THR ASN LEU PHE LEU VAL ALA SEQRES 10 B 173 ALA HIS GLU ILE GLY HIS SER LEU GLY LEU PHE HIS SER SEQRES 11 B 173 ALA ASN THR GLU ALA LEU MET TYR PRO LEU TYR HIS SER SEQRES 12 B 173 LEU THR ASP LEU THR ARG PHE ARG LEU SER GLN ASP ASP SEQRES 13 B 173 ILE ASN GLY ILE GLN SER LEU TYR GLY PRO PRO PRO ASP SEQRES 14 B 173 SER PRO GLU THR HET ZN A 301 1 HET ZN A 302 1 HET CA A 303 1 HET CA A 304 1 HET CA A 305 1 HET ZN B 801 1 HET ZN B 802 1 HET CA B 803 1 HET CA B 804 1 HET CA B 805 1 HET MBS B 901 28 HETNAM ZN ZINC ION HETNAM CA CALCIUM ION HETNAM MBS R-2-{[4'-METHOXY-(1,1'-BIPHENYL)-4-YL]-SULFONYL}-AMINO- HETNAM 2 MBS 6-METHOXY-HEX-4-YNOIC ACID FORMUL 3 ZN 4(ZN 2+) FORMUL 5 CA 6(CA 2+) FORMUL 13 MBS C20 H21 N O6 S FORMUL 14 HOH *336(H2 O) HELIX 1 1 PRO A 109 GLU A 126 1 18 HELIX 2 2 LEU A 195 LEU A 207 1 13 HELIX 3 3 SER A 235 GLY A 247 1 13 HELIX 4 4 PRO B 609 GLU B 626 1 18 HELIX 5 5 LEU B 695 LEU B 707 1 13 HELIX 6 6 ASP B 728 PHE B 732 5 5 HELIX 7 7 SER B 735 GLY B 747 1 13 SHEET 1 A 5 THR A 131 ARG A 134 0 SHEET 2 A 5 HIS A 96 ILE A 101 1 N LEU A 97 O THR A 131 SHEET 3 A 5 ILE A 142 ALA A 147 1 N ILE A 142 O THR A 98 SHEET 4 A 5 ALA A 178 ASP A 181 1 N ALA A 178 O MET A 143 SHEET 5 A 5 ALA A 165 ALA A 167 -1 O HIS A 166 N HIS A 179 SHEET 1 B 2 TRP A 186 THR A 187 0 SHEET 2 B 2 THR A 193 ASN A 194 1 O THR A 193 N THR A 187 SHEET 1 C 5 THR B 631 ARG B 634 0 SHEET 2 C 5 HIS B 596 ILE B 601 1 N LEU B 597 O THR B 631 SHEET 3 C 5 ILE B 642 ALA B 647 1 N ILE B 642 O THR B 598 SHEET 4 C 5 ALA B 678 ASP B 681 1 N ALA B 678 O MET B 643 SHEET 5 C 5 ALA B 665 ALA B 667 -1 O HIS B 666 N HIS B 679 SHEET 1 D 2 TRP B 686 THR B 687 0 SHEET 2 D 2 THR B 693 ASN B 694 1 O THR B 693 N THR B 687 LINK OD1 ASP A 107 CA CA A 304 1555 1555 2.57 LINK OD2 ASP A 107 CA CA A 304 1555 1555 2.45 LINK O ASP A 141 CA CA A 305 1555 1555 2.33 LINK NE2 HIS A 151 ZN ZN A 302 1555 1555 2.07 LINK OD2 ASP A 153 ZN ZN A 302 1555 1555 1.99 LINK OD1 ASP A 158 CA CA A 303 1555 1555 2.36 LINK O GLY A 159 CA CA A 303 1555 1555 2.28 LINK O GLY A 161 CA CA A 303 1555 1555 2.42 LINK O VAL A 163 CA CA A 303 1555 1555 2.27 LINK NE2 HIS A 166 ZN ZN A 302 1555 1555 1.99 LINK O GLY A 173 CA CA A 305 1555 1555 2.28 LINK O ASN A 175 CA CA A 305 1555 1555 2.33 LINK OD1 ASP A 177 CA CA A 305 1555 1555 2.37 LINK ND1 HIS A 179 ZN ZN A 302 1555 1555 2.05 LINK OD2 ASP A 181 CA CA A 303 1555 1555 2.30 LINK OD1 ASP A 182 CA CA A 304 1555 1555 2.42 LINK O ASP A 182 CA CA A 304 1555 1555 2.39 LINK OE2 GLU A 184 CA CA A 303 1555 1555 2.28 LINK O GLU A 184 CA CA A 304 1555 1555 2.40 LINK NE2 HIS A 201 ZN ZN A 301 1555 1555 2.02 LINK NE2 HIS A 205 ZN ZN A 301 1555 1555 2.11 LINK NE2 HIS A 211 ZN ZN A 301 1555 1555 2.07 LINK ZN ZN A 301 OXT THR B 755 1555 2464 1.95 LINK CA CA A 304 O HOH A 326 1555 1555 2.37 LINK CA CA A 304 O HOH A 341 1555 1555 2.37 LINK CA CA A 305 O HOH A 306 1555 1555 2.32 LINK CA CA A 305 O HOH A 307 1555 1555 2.31 LINK O HOH B 12 CA CA B 805 1555 1555 2.36 LINK O HOH B 20 CA CA B 804 1555 1555 2.34 LINK O HOH B 52 CA CA B 804 1555 1555 2.38 LINK O HOH B 64 CA CA B 805 1555 1555 2.36 LINK OD2 ASP B 607 CA CA B 804 1555 1555 2.45 LINK OD1 ASP B 607 CA CA B 804 1555 1555 2.58 LINK O ASP B 641 CA CA B 805 1555 1555 2.29 LINK NE2 HIS B 651 ZN ZN B 802 1555 1555 2.03 LINK OD2 ASP B 653 ZN ZN B 802 1555 1555 2.04 LINK OD1 ASP B 658 CA CA B 803 1555 1555 2.32 LINK O GLY B 659 CA CA B 803 1555 1555 2.32 LINK O GLY B 661 CA CA B 803 1555 1555 2.34 LINK O VAL B 663 CA CA B 803 1555 1555 2.30 LINK NE2 HIS B 666 ZN ZN B 802 1555 1555 2.01 LINK O GLY B 673 CA CA B 805 1555 1555 2.24 LINK O ASN B 675 CA CA B 805 1555 1555 2.31 LINK OD1 ASP B 677 CA CA B 805 1555 1555 2.35 LINK ND1 HIS B 679 ZN ZN B 802 1555 1555 2.06 LINK OD2 ASP B 681 CA CA B 803 1555 1555 2.32 LINK O ASP B 682 CA CA B 804 1555 1555 2.38 LINK OD1 ASP B 682 CA CA B 804 1555 1555 2.39 LINK OE2 GLU B 684 CA CA B 803 1555 1555 2.21 LINK O GLU B 684 CA CA B 804 1555 1555 2.47 LINK NE2 HIS B 701 ZN ZN B 801 1555 1555 2.09 LINK NE2 HIS B 705 ZN ZN B 801 1555 1555 2.17 LINK NE2 HIS B 711 ZN ZN B 801 1555 1555 2.09 LINK ZN ZN B 801 O2 MBS B 901 1555 1555 1.93 SITE 1 AC1 5 HIS A 201 HIS A 205 HIS A 211 HOH A 379 SITE 2 AC1 5 THR B 755 SITE 1 AC2 4 HIS A 151 ASP A 153 HIS A 166 HIS A 179 SITE 1 AC3 6 ASP A 158 GLY A 159 GLY A 161 VAL A 163 SITE 2 AC3 6 ASP A 181 GLU A 184 SITE 1 AC4 5 ASP A 107 ASP A 182 GLU A 184 HOH A 326 SITE 2 AC4 5 HOH A 341 SITE 1 AC5 6 ASP A 141 GLY A 173 ASN A 175 ASP A 177 SITE 2 AC5 6 HOH A 306 HOH A 307 SITE 1 AC6 4 HIS B 701 HIS B 705 HIS B 711 MBS B 901 SITE 1 AC7 4 HIS B 651 ASP B 653 HIS B 666 HIS B 679 SITE 1 AC8 6 ASP B 658 GLY B 659 GLY B 661 VAL B 663 SITE 2 AC8 6 ASP B 681 GLU B 684 SITE 1 AC9 5 HOH B 20 HOH B 52 ASP B 607 ASP B 682 SITE 2 AC9 5 GLU B 684 SITE 1 BC1 6 HOH B 12 HOH B 64 ASP B 641 GLY B 673 SITE 2 BC1 6 ASN B 675 ASP B 677 SITE 1 BC2 17 HOH B 76 HOH B 109 HOH B 221 VAL B 663 SITE 2 BC2 17 LEU B 664 ALA B 665 HIS B 666 LEU B 697 SITE 3 BC2 17 HIS B 701 GLU B 702 HIS B 705 HIS B 711 SITE 4 BC2 17 LEU B 718 TYR B 720 PRO B 721 LEU B 722 SITE 5 BC2 17 ZN B 801 CRYST1 37.918 78.059 105.801 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026373 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012811 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009452 0.00000