HEADER OXIDOREDUCTASE 27-JAN-01 1HZZ TITLE THE ASYMMETRIC COMPLEX OF THE TWO NUCLEOTIDE-BINDING COMPONENTS (DI, TITLE 2 DIII) OF PROTON-TRANSLOCATING TRANSHYDROGENASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTON-TRANSLOCATING NICOTINAMIDE NUCLEOTIDE COMPND 3 TRANSHYDROGENASE SUBUNIT PNTAA; COMPND 4 CHAIN: A, B; COMPND 5 EC: 1.6.1.1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: PROTON-TRANSLOCATING NICOTINAMIDE NUCLEOTIDE COMPND 9 TRANSHYDROGENASE SUBUNIT PNTB; COMPND 10 CHAIN: C; COMPND 11 FRAGMENT: RESIDUES 262-464; COMPND 12 EC: 1.6.1.1; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOSPIRILLUM RUBRUM; SOURCE 3 ORGANISM_TAXID: 1085; SOURCE 4 GENE: PNTAA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: RHODOSPIRILLUM RUBRUM; SOURCE 9 ORGANISM_TAXID: 1085; SOURCE 10 GENE: PNTB; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ROSSMANN FOLD, ALPHA BETA REPEAT, NUCLEOTIDE-BINDING FOLD, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR N.P.J.COTTON,S.A.WHITE,S.J.PEAKE,S.MCSWEENEY,J.B.JACKSON REVDAT 5 07-FEB-24 1HZZ 1 REMARK REVDAT 4 21-JUL-21 1HZZ 1 REMARK REVDAT 3 24-FEB-09 1HZZ 1 VERSN REVDAT 2 01-APR-03 1HZZ 1 JRNL REVDAT 1 29-AUG-01 1HZZ 0 JRNL AUTH N.P.COTTON,S.A.WHITE,S.J.PEAKE,S.MCSWEENEY,J.B.JACKSON JRNL TITL THE CRYSTAL STRUCTURE OF AN ASYMMETRIC COMPLEX OF THE TWO JRNL TITL 2 NUCLEOTIDE BINDING COMPONENTS OF PROTON-TRANSLOCATING JRNL TITL 3 TRANSHYDROGENASE. JRNL REF STRUCTURE V. 9 165 2001 JRNL REFN ISSN 0969-2126 JRNL PMID 11250201 JRNL DOI 10.1016/S0969-2126(01)00571-8 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.96 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.0 REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.261 REMARK 3 FREE R VALUE : 0.297 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 3075 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.66 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 79.50 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3890 REMARK 3 BIN FREE R VALUE : 0.4150 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 438 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6669 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 92 REMARK 3 SOLVENT ATOMS : 74 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 48.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.22000 REMARK 3 B22 (A**2) : 7.25000 REMARK 3 B33 (A**2) : -13.47000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.42 REMARK 3 ESD FROM SIGMAA (A) : 0.54 REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.90 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.180 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1HZZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-APR-01. REMARK 100 THE DEPOSITION ID IS D_1000012734. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-APR-00 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM30A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97243 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 135437 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.1 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.45000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG-8K, AMMONIUM SULPHATE, PH 6.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.73950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 102.56850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.08300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 102.56850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.73950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.08300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 223 REMARK 465 GLU A 224 REMARK 465 ALA A 225 REMARK 465 MET A 226 REMARK 465 LYS A 227 REMARK 465 THR A 228 REMARK 465 ALA A 229 REMARK 465 GLU A 230 REMARK 465 THR A 231 REMARK 465 GLY A 372 REMARK 465 ALA A 373 REMARK 465 ILE A 374 REMARK 465 VAL A 375 REMARK 465 HIS A 376 REMARK 465 PRO A 377 REMARK 465 ALA A 378 REMARK 465 LEU A 379 REMARK 465 THR A 380 REMARK 465 GLY A 381 REMARK 465 GLN A 382 REMARK 465 GLY A 383 REMARK 465 ALA A 384 REMARK 465 LYS B 227 REMARK 465 THR B 228 REMARK 465 ALA B 229 REMARK 465 GLU B 230 REMARK 465 THR B 231 REMARK 465 ALA B 232 REMARK 465 GLY B 233 REMARK 465 GLY B 234 REMARK 465 TYR B 235 REMARK 465 ALA B 236 REMARK 465 LYS B 237 REMARK 465 GLU B 238 REMARK 465 MET B 239 REMARK 465 GLY B 240 REMARK 465 GLU B 241 REMARK 465 GLN B 382 REMARK 465 GLY B 383 REMARK 465 ALA B 384 REMARK 465 MET C 1 REMARK 465 ASN C 2 REMARK 465 ARG C 3 REMARK 465 SER C 4 REMARK 465 ILE C 5 REMARK 465 PHE C 6 REMARK 465 ASN C 7 REMARK 465 VAL C 8 REMARK 465 ILE C 9 REMARK 465 LEU C 10 REMARK 465 GLY C 11 REMARK 465 GLY C 12 REMARK 465 PHE C 13 REMARK 465 GLY C 14 REMARK 465 SER C 15 REMARK 465 GLU C 16 REMARK 465 GLY C 17 REMARK 465 GLY C 18 REMARK 465 VAL C 19 REMARK 465 ALA C 20 REMARK 465 ALA C 21 REMARK 465 ALA C 22 REMARK 465 GLY C 23 REMARK 465 GLY C 24 REMARK 465 ALA C 25 REMARK 465 ALA C 26 REMARK 465 GLY C 27 REMARK 465 ASP C 28 REMARK 465 ARG C 29 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N ASP B 350 N THR B 351 1.67 REMARK 500 O LYS B 349 OD2 ASP B 350 1.76 REMARK 500 OE1 GLU B 224 N MET B 226 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP A 222 C ASP A 222 O 0.202 REMARK 500 MET A 239 CG MET A 239 SD 0.215 REMARK 500 MET A 280 CG MET A 280 SD 0.157 REMARK 500 MET A 284 CG MET A 284 SD 0.156 REMARK 500 MET B 1 CG MET B 1 SD 0.162 REMARK 500 GLU B 224 CG GLU B 224 CD 0.099 REMARK 500 MET B 226 CG MET B 226 SD 0.288 REMARK 500 ASP B 348 C LYS B 349 N 0.164 REMARK 500 GLY B 381 C GLY B 381 O 0.412 REMARK 500 ASN C 203 C ASN C 203 O 0.128 REMARK 500 ASN C 203 C ASN C 203 OXT 0.405 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET B 226 CB - CG - SD ANGL. DEV. = -24.4 DEGREES REMARK 500 ASP B 350 N - CA - C ANGL. DEV. = -19.0 DEGREES REMARK 500 ASP B 350 CA - C - N ANGL. DEV. = -19.7 DEGREES REMARK 500 ASP B 350 O - C - N ANGL. DEV. = 19.5 DEGREES REMARK 500 THR B 351 O - C - N ANGL. DEV. = 10.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 6 -171.83 -69.69 REMARK 500 SER A 44 13.61 54.16 REMARK 500 ALA A 52 -19.15 -48.47 REMARK 500 GLN A 67 -7.37 -145.40 REMARK 500 ASP A 85 105.79 -45.84 REMARK 500 ILE A 90 104.87 -50.33 REMARK 500 LYS A 91 109.09 -41.08 REMARK 500 CYS A 98 179.08 171.15 REMARK 500 ALA A 102 -89.64 -44.34 REMARK 500 LEU A 103 -29.17 -25.76 REMARK 500 ASN A 105 61.02 -156.85 REMARK 500 MET A 125 135.24 -39.93 REMARK 500 VAL A 221 -159.05 -67.09 REMARK 500 TYR A 235 -148.86 -154.57 REMARK 500 GLU A 238 168.62 -48.76 REMARK 500 ALA A 248 -18.73 -45.83 REMARK 500 LEU A 252 -38.83 -39.22 REMARK 500 PRO A 268 130.34 -25.98 REMARK 500 THR A 282 3.30 -63.48 REMARK 500 HIS A 320 164.97 -47.38 REMARK 500 LYS A 349 83.23 -38.54 REMARK 500 ASP A 350 91.93 52.44 REMARK 500 THR A 351 -1.41 -164.17 REMARK 500 VAL A 355 78.01 -103.22 REMARK 500 MET A 356 103.03 -57.77 REMARK 500 LYS A 357 -16.27 -31.47 REMARK 500 LEU A 358 -58.30 57.79 REMARK 500 GLU A 361 -5.19 -59.02 REMARK 500 THR A 366 -35.59 -142.37 REMARK 500 ARG A 370 42.44 -140.46 REMARK 500 ALA B 17 39.25 -74.61 REMARK 500 ALA B 52 -10.51 -49.82 REMARK 500 SER B 66 -75.63 -11.54 REMARK 500 GLU B 81 -8.13 -58.42 REMARK 500 CYS B 98 -173.33 -176.71 REMARK 500 LEU B 103 1.72 -57.39 REMARK 500 SER B 129 -52.96 -5.82 REMARK 500 VAL B 180 48.46 -107.90 REMARK 500 ALA B 206 -9.83 -59.90 REMARK 500 ASP B 222 42.65 -85.62 REMARK 500 GLU B 224 -126.80 -72.57 REMARK 500 ALA B 225 77.86 162.91 REMARK 500 PHE B 243 91.35 -19.92 REMARK 500 LYS B 245 -11.74 -46.52 REMARK 500 LYS B 246 43.96 -91.21 REMARK 500 ALA B 248 -8.75 -59.71 REMARK 500 LYS B 283 2.90 -66.72 REMARK 500 PRO B 302 -5.95 -50.60 REMARK 500 PRO B 306 102.48 -35.40 REMARK 500 HIS B 313 17.16 59.57 REMARK 500 REMARK 500 THIS ENTRY HAS 79 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP C 300 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1DJL RELATED DB: PDB REMARK 900 THE CRYSTAL STRUCTURE OF HUMAN TRANSHYDROGENASE DOMAIN III WITH REMARK 900 BOUND NADP REMARK 900 RELATED ID: 1E3T RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE NADP-BINDING COMPONENT (DIII) OF PROTON- REMARK 900 TRANSLOCATING TRANSHYDROGENASE FROM RHODOSPIRILLUM RUBRUM REMARK 900 RELATED ID: 1F8G RELATED DB: PDB REMARK 900 THE X-RAY STRUCTURE OF TRANSHYDROGENASE FROM R. RUBRUM COMPLEXED REMARK 900 WITH NAD+ DBREF 1HZZ A 1 384 UNP Q60164 PNTAA_RHORU 1 384 DBREF 1HZZ B 1 384 UNP Q60164 PNTAA_RHORU 1 384 DBREF 1HZZ C 1 203 UNP Q59765 PNTB_RHORU 262 464 SEQRES 1 A 384 MET LYS ILE ALA ILE PRO LYS GLU ARG ARG PRO GLY GLU SEQRES 2 A 384 ASP ARG VAL ALA ILE SER PRO GLU VAL VAL LYS LYS LEU SEQRES 3 A 384 VAL GLY LEU GLY PHE GLU VAL ILE VAL GLU GLN GLY ALA SEQRES 4 A 384 GLY VAL GLY ALA SER ILE THR ASP ASP ALA LEU THR ALA SEQRES 5 A 384 ALA GLY ALA THR ILE ALA SER THR ALA ALA GLN ALA LEU SEQRES 6 A 384 SER GLN ALA ASP VAL VAL TRP LYS VAL GLN ARG PRO MET SEQRES 7 A 384 THR ALA GLU GLU GLY THR ASP GLU VAL ALA LEU ILE LYS SEQRES 8 A 384 GLU GLY ALA VAL LEU MET CYS HIS LEU GLY ALA LEU THR SEQRES 9 A 384 ASN ARG PRO VAL VAL GLU ALA LEU THR LYS ARG LYS ILE SEQRES 10 A 384 THR ALA TYR ALA MET GLU LEU MET PRO ARG ILE SER ARG SEQRES 11 A 384 ALA GLN SER MET ASP ILE LEU SER SER GLN SER ASN LEU SEQRES 12 A 384 ALA GLY TYR ARG ALA VAL ILE ASP GLY ALA TYR GLU PHE SEQRES 13 A 384 ALA ARG ALA PHE PRO MET MET MET THR ALA ALA GLY THR SEQRES 14 A 384 VAL PRO PRO ALA ARG VAL LEU VAL PHE GLY VAL GLY VAL SEQRES 15 A 384 ALA GLY LEU GLN ALA ILE ALA THR ALA LYS ARG LEU GLY SEQRES 16 A 384 ALA VAL VAL MET ALA THR ASP VAL ARG ALA ALA THR LYS SEQRES 17 A 384 GLU GLN VAL GLU SER LEU GLY GLY LYS PHE ILE THR VAL SEQRES 18 A 384 ASP ASP GLU ALA MET LYS THR ALA GLU THR ALA GLY GLY SEQRES 19 A 384 TYR ALA LYS GLU MET GLY GLU GLU PHE ARG LYS LYS GLN SEQRES 20 A 384 ALA GLU ALA VAL LEU LYS GLU LEU VAL LYS THR ASP ILE SEQRES 21 A 384 ALA ILE THR THR ALA LEU ILE PRO GLY LYS PRO ALA PRO SEQRES 22 A 384 VAL LEU ILE THR GLU GLU MET VAL THR LYS MET LYS PRO SEQRES 23 A 384 GLY SER VAL ILE ILE ASP LEU ALA VAL GLU ALA GLY GLY SEQRES 24 A 384 ASN CYS PRO LEU SER GLU PRO GLY LYS ILE VAL VAL LYS SEQRES 25 A 384 HIS GLY VAL LYS ILE VAL GLY HIS THR ASN VAL PRO SER SEQRES 26 A 384 ARG VAL ALA ALA ASP ALA SER PRO LEU PHE ALA LYS ASN SEQRES 27 A 384 LEU LEU ASN PHE LEU THR PRO HIS VAL ASP LYS ASP THR SEQRES 28 A 384 LYS THR LEU VAL MET LYS LEU GLU ASP GLU THR VAL SER SEQRES 29 A 384 GLY THR CYS VAL THR ARG ASP GLY ALA ILE VAL HIS PRO SEQRES 30 A 384 ALA LEU THR GLY GLN GLY ALA SEQRES 1 B 384 MET LYS ILE ALA ILE PRO LYS GLU ARG ARG PRO GLY GLU SEQRES 2 B 384 ASP ARG VAL ALA ILE SER PRO GLU VAL VAL LYS LYS LEU SEQRES 3 B 384 VAL GLY LEU GLY PHE GLU VAL ILE VAL GLU GLN GLY ALA SEQRES 4 B 384 GLY VAL GLY ALA SER ILE THR ASP ASP ALA LEU THR ALA SEQRES 5 B 384 ALA GLY ALA THR ILE ALA SER THR ALA ALA GLN ALA LEU SEQRES 6 B 384 SER GLN ALA ASP VAL VAL TRP LYS VAL GLN ARG PRO MET SEQRES 7 B 384 THR ALA GLU GLU GLY THR ASP GLU VAL ALA LEU ILE LYS SEQRES 8 B 384 GLU GLY ALA VAL LEU MET CYS HIS LEU GLY ALA LEU THR SEQRES 9 B 384 ASN ARG PRO VAL VAL GLU ALA LEU THR LYS ARG LYS ILE SEQRES 10 B 384 THR ALA TYR ALA MET GLU LEU MET PRO ARG ILE SER ARG SEQRES 11 B 384 ALA GLN SER MET ASP ILE LEU SER SER GLN SER ASN LEU SEQRES 12 B 384 ALA GLY TYR ARG ALA VAL ILE ASP GLY ALA TYR GLU PHE SEQRES 13 B 384 ALA ARG ALA PHE PRO MET MET MET THR ALA ALA GLY THR SEQRES 14 B 384 VAL PRO PRO ALA ARG VAL LEU VAL PHE GLY VAL GLY VAL SEQRES 15 B 384 ALA GLY LEU GLN ALA ILE ALA THR ALA LYS ARG LEU GLY SEQRES 16 B 384 ALA VAL VAL MET ALA THR ASP VAL ARG ALA ALA THR LYS SEQRES 17 B 384 GLU GLN VAL GLU SER LEU GLY GLY LYS PHE ILE THR VAL SEQRES 18 B 384 ASP ASP GLU ALA MET LYS THR ALA GLU THR ALA GLY GLY SEQRES 19 B 384 TYR ALA LYS GLU MET GLY GLU GLU PHE ARG LYS LYS GLN SEQRES 20 B 384 ALA GLU ALA VAL LEU LYS GLU LEU VAL LYS THR ASP ILE SEQRES 21 B 384 ALA ILE THR THR ALA LEU ILE PRO GLY LYS PRO ALA PRO SEQRES 22 B 384 VAL LEU ILE THR GLU GLU MET VAL THR LYS MET LYS PRO SEQRES 23 B 384 GLY SER VAL ILE ILE ASP LEU ALA VAL GLU ALA GLY GLY SEQRES 24 B 384 ASN CYS PRO LEU SER GLU PRO GLY LYS ILE VAL VAL LYS SEQRES 25 B 384 HIS GLY VAL LYS ILE VAL GLY HIS THR ASN VAL PRO SER SEQRES 26 B 384 ARG VAL ALA ALA ASP ALA SER PRO LEU PHE ALA LYS ASN SEQRES 27 B 384 LEU LEU ASN PHE LEU THR PRO HIS VAL ASP LYS ASP THR SEQRES 28 B 384 LYS THR LEU VAL MET LYS LEU GLU ASP GLU THR VAL SER SEQRES 29 B 384 GLY THR CYS VAL THR ARG ASP GLY ALA ILE VAL HIS PRO SEQRES 30 B 384 ALA LEU THR GLY GLN GLY ALA SEQRES 1 C 203 MET ASN ARG SER ILE PHE ASN VAL ILE LEU GLY GLY PHE SEQRES 2 C 203 GLY SER GLU GLY GLY VAL ALA ALA ALA GLY GLY ALA ALA SEQRES 3 C 203 GLY ASP ARG SER VAL LYS ALA GLY SER ALA GLU ASP ALA SEQRES 4 C 203 ALA PHE ILE MET LYS ASN ALA SER LYS VAL ILE ILE VAL SEQRES 5 C 203 PRO GLY TYR GLY MET ALA VAL ALA GLN ALA GLN HIS ALA SEQRES 6 C 203 LEU ARG GLU MET ALA ASP VAL LEU LYS LYS GLU GLY VAL SEQRES 7 C 203 GLU VAL SER TYR ALA ILE HIS PRO VAL ALA GLY ARG MET SEQRES 8 C 203 PRO GLY HIS MET ASN VAL LEU LEU ALA GLU ALA ASN VAL SEQRES 9 C 203 PRO TYR ASP GLU VAL PHE GLU LEU GLU GLU ILE ASN SER SEQRES 10 C 203 SER PHE GLN THR ALA ASP VAL ALA PHE VAL ILE GLY ALA SEQRES 11 C 203 ASN ASP VAL THR ASN PRO ALA ALA LYS THR ASP PRO SER SEQRES 12 C 203 SER PRO ILE TYR GLY MET PRO ILE LEU ASP VAL GLU LYS SEQRES 13 C 203 ALA GLY THR VAL LEU PHE ILE LYS ARG SER MET ALA SER SEQRES 14 C 203 GLY TYR ALA GLY VAL GLU ASN GLU LEU PHE PHE ARG ASN SEQRES 15 C 203 ASN THR MET MET LEU PHE GLY ASP ALA LYS LYS MET THR SEQRES 16 C 203 GLU GLN ILE VAL GLN ALA MET ASN HET NAD A 400 44 HET NAP C 300 48 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 4 NAD C21 H27 N7 O14 P2 FORMUL 5 NAP C21 H28 N7 O17 P3 FORMUL 6 HOH *74(H2 O) HELIX 1 1 SER A 19 GLY A 30 1 12 HELIX 2 2 THR A 46 ALA A 52 1 7 HELIX 3 3 THR A 60 SER A 66 1 7 HELIX 4 4 THR A 79 GLY A 83 5 5 HELIX 5 5 GLY A 101 THR A 104 5 4 HELIX 6 6 ASN A 105 ARG A 115 1 11 HELIX 7 7 GLU A 123 MET A 125 5 3 HELIX 8 8 ILE A 128 MET A 134 5 7 HELIX 9 9 ASP A 135 PHE A 156 1 22 HELIX 10 10 GLY A 181 LEU A 194 1 14 HELIX 11 11 ALA A 206 SER A 213 1 8 HELIX 12 12 GLY A 240 VAL A 256 1 17 HELIX 13 13 THR A 277 THR A 282 1 6 HELIX 14 14 ALA A 294 GLY A 298 5 5 HELIX 15 15 ASN A 322 ARG A 326 5 5 HELIX 16 16 VAL A 327 THR A 344 1 18 HELIX 17 17 PRO A 345 VAL A 347 5 3 HELIX 18 18 ASP A 360 GLY A 365 1 6 HELIX 19 19 SER B 19 LEU B 29 1 11 HELIX 20 20 GLY B 40 SER B 44 5 5 HELIX 21 21 THR B 46 ALA B 52 1 7 HELIX 22 22 THR B 60 SER B 66 1 7 HELIX 23 23 THR B 79 GLY B 83 5 5 HELIX 24 24 ASP B 85 ILE B 90 1 6 HELIX 25 25 GLY B 101 THR B 104 5 4 HELIX 26 26 ASN B 105 ARG B 115 1 11 HELIX 27 27 GLU B 123 MET B 125 5 3 HELIX 28 28 ILE B 128 GLN B 132 5 5 HELIX 29 29 ASP B 135 PHE B 156 1 22 HELIX 30 30 GLY B 181 GLY B 195 1 15 HELIX 31 31 ALA B 206 SER B 213 1 8 HELIX 32 32 GLN B 247 VAL B 256 1 10 HELIX 33 33 THR B 277 LYS B 283 1 7 HELIX 34 34 ALA B 294 GLY B 298 5 5 HELIX 35 35 ASN B 322 ARG B 326 5 5 HELIX 36 36 VAL B 327 THR B 344 1 18 HELIX 37 37 PRO B 345 VAL B 347 5 3 HELIX 38 38 ASP B 360 GLY B 365 1 6 HELIX 39 39 SER C 35 ASN C 45 1 11 HELIX 40 40 GLY C 54 ALA C 60 1 7 HELIX 41 41 ALA C 62 VAL C 72 1 11 HELIX 42 42 GLY C 93 ALA C 102 1 10 HELIX 43 43 PRO C 105 ASP C 107 5 3 HELIX 44 44 GLU C 113 ILE C 115 5 3 HELIX 45 45 ASN C 135 LYS C 139 5 5 HELIX 46 46 ASN C 176 PHE C 180 5 5 HELIX 47 47 ASP C 190 ALA C 201 1 12 SHEET 1 A 7 THR A 56 ALA A 58 0 SHEET 2 A 7 GLU A 32 GLU A 36 1 N VAL A 35 O THR A 56 SHEET 3 A 7 LYS A 2 ILE A 5 1 N ILE A 5 O ILE A 34 SHEET 4 A 7 VAL A 70 GLN A 75 1 O TRP A 72 N ALA A 4 SHEET 5 A 7 VAL A 95 HIS A 99 1 O VAL A 95 N VAL A 71 SHEET 6 A 7 THR A 118 ALA A 121 1 O THR A 118 N LEU A 96 SHEET 7 A 7 CYS A 367 ARG A 370 -1 O THR A 369 N ALA A 119 SHEET 1 B 2 MET A 163 THR A 165 0 SHEET 2 B 2 GLY A 168 VAL A 170 -1 O GLY A 168 N THR A 165 SHEET 1 C 7 LYS A 217 PHE A 218 0 SHEET 2 C 7 VAL A 197 THR A 201 1 N ALA A 200 O LYS A 217 SHEET 3 C 7 ARG A 174 PHE A 178 1 N VAL A 177 O MET A 199 SHEET 4 C 7 ILE A 260 THR A 263 1 O ILE A 262 N PHE A 178 SHEET 5 C 7 VAL A 289 ASP A 292 1 O ILE A 291 N ALA A 261 SHEET 6 C 7 VAL A 315 VAL A 318 1 O LYS A 316 N ILE A 290 SHEET 7 C 7 VAL A 310 LYS A 312 -1 N VAL A 310 O ILE A 317 SHEET 1 D 8 THR B 56 ALA B 58 0 SHEET 2 D 8 GLU B 32 GLU B 36 1 N VAL B 35 O THR B 56 SHEET 3 D 8 LYS B 2 ILE B 5 1 N ILE B 5 O ILE B 34 SHEET 4 D 8 VAL B 70 GLN B 75 1 O TRP B 72 N ALA B 4 SHEET 5 D 8 VAL B 95 HIS B 99 1 O VAL B 95 N VAL B 71 SHEET 6 D 8 THR B 118 ALA B 121 1 O THR B 118 N LEU B 96 SHEET 7 D 8 CYS B 367 ARG B 370 -1 O VAL B 368 N ALA B 119 SHEET 8 D 8 ALA B 373 ILE B 374 -1 O ALA B 373 N ARG B 370 SHEET 1 E 2 MET B 163 THR B 165 0 SHEET 2 E 2 GLY B 168 VAL B 170 -1 O GLY B 168 N THR B 165 SHEET 1 F 6 VAL B 197 THR B 201 0 SHEET 2 F 6 ARG B 174 PHE B 178 1 N VAL B 177 O THR B 201 SHEET 3 F 6 ILE B 260 THR B 263 1 O ILE B 262 N PHE B 178 SHEET 4 F 6 VAL B 289 ASP B 292 1 O ILE B 291 N ALA B 261 SHEET 5 F 6 VAL B 315 VAL B 318 1 O VAL B 318 N ILE B 290 SHEET 6 F 6 ILE B 309 LYS B 312 -1 N VAL B 310 O ILE B 317 SHEET 1 G 6 VAL C 109 GLU C 111 0 SHEET 2 G 6 GLU C 79 ILE C 84 1 N ILE C 84 O PHE C 110 SHEET 3 G 6 LYS C 48 ILE C 51 1 N ILE C 51 O SER C 81 SHEET 4 G 6 VAL C 124 PHE C 126 1 O VAL C 124 N ILE C 50 SHEET 5 G 6 THR C 159 LYS C 164 1 O LEU C 161 N ALA C 125 SHEET 6 G 6 THR C 184 PHE C 188 1 O LEU C 187 N PHE C 162 SITE 1 AC1 17 PRO A 126 ARG A 127 ILE A 128 GLN A 132 SITE 2 AC1 17 ASP A 135 GLY A 181 VAL A 182 ASP A 202 SITE 3 AC1 17 VAL A 203 ARG A 204 GLY A 234 GLN A 247 SITE 4 AC1 17 THR A 264 ALA A 265 LEU A 266 PRO A 273 SITE 5 AC1 17 HOH A 411 SITE 1 AC2 22 GLN B 132 GLY C 54 TYR C 55 GLY C 56 SITE 2 AC2 22 VAL C 87 ALA C 88 GLY C 89 ARG C 90 SITE 3 AC2 22 MET C 91 PRO C 92 GLY C 129 ALA C 130 SITE 4 AC2 22 ASN C 131 ASP C 132 VAL C 133 LYS C 164 SITE 5 AC2 22 ARG C 165 SER C 166 GLY C 170 TYR C 171 SITE 6 AC2 22 ASP C 190 ALA C 191 CRYST1 71.479 74.166 205.137 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013990 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013483 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004875 0.00000