HEADER TRANSFERASE 30-JAN-01 1I12 TITLE CRYSTAL STRUCTURE OF SACCHAROMYCES CEREVISIAE GNA1 COMPLEXED WITH TITLE 2 ACCOA COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCOSAMINE-PHOSPHATE N-ACETYLTRANSFERASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: PHOSPHOGLUCOSAMINE TRANSACETYLASE; PHOSPHOGLUCOSAMINE COMPND 5 ACETYLASE; COMPND 6 EC: 2.3.1.4; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: YFL017C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: M15 (PREP4); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PQE30 KEYWDS GNAT, ALPHA/BETA, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.PENEFF,D.MENGIN-LECREULX,Y.BOURNE REVDAT 5 07-FEB-24 1I12 1 REMARK REVDAT 4 27-OCT-21 1I12 1 REMARK SEQADV REVDAT 3 31-JAN-18 1I12 1 REMARK REVDAT 2 24-FEB-09 1I12 1 VERSN REVDAT 1 16-MAY-01 1I12 0 JRNL AUTH C.PENEFF,D.MENGIN-LECREULX,Y.BOURNE JRNL TITL THE CRYSTAL STRUCTURES OF APO AND COMPLEXED SACCHAROMYCES JRNL TITL 2 CEREVISIAE GNA1 SHED LIGHT ON THE CATALYTIC MECHANISM OF AN JRNL TITL 3 AMINO-SUGAR N-ACETYLTRANSFERASE. JRNL REF J.BIOL.CHEM. V. 276 16328 2001 JRNL REFN ISSN 0021-9258 JRNL PMID 11278591 JRNL DOI 10.1074/JBC.M009988200 REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.86 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2235690.090 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 94.3 REMARK 3 NUMBER OF REFLECTIONS : 163383 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.800 REMARK 3 FREE R VALUE TEST SET COUNT : 2955 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.38 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 25603 REMARK 3 BIN R VALUE (WORKING SET) : 0.2880 REMARK 3 BIN FREE R VALUE : 0.2990 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 1.70 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 453 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.014 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4917 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 214 REMARK 3 SOLVENT ATOMS : 629 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.63000 REMARK 3 B22 (A**2) : 3.62000 REMARK 3 B33 (A**2) : -1.99000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.72000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.16 REMARK 3 ESD FROM SIGMAA (A) : 0.15 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.17 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.16 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.018 REMARK 3 BOND ANGLES (DEGREES) : 1.600 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.10 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.180 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.190 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.800 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.080 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.010 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 42.56 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : LIGAND.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : LIGAND.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1I12 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-FEB-01. REMARK 100 THE DEPOSITION ID IS D_1000012773. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-NOV-99 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9326 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 547136 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 26.820 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.900 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 200 DATA REDUNDANCY : 2.050 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04500 REMARK 200 FOR THE DATA SET : 7.9724 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.35 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.3 REMARK 200 DATA REDUNDANCY IN SHELL : 1.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.37600 REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 600, IMIDAZOLE, MALATE, PH 5.1, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 20K, TEMPERATURE REMARK 280 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 78.27950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.92100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 78.27950 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 25.92100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1313 LIES ON A SPECIAL POSITION. REMARK 375 HOH D1231 LIES ON A SPECIAL POSITION. REMARK 375 HOH D1300 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ASP A 53 REMARK 465 ASN A 54 REMARK 465 GLU A 55 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 ASP B 53 REMARK 465 ASN B 54 REMARK 465 GLU B 55 REMARK 465 ASP B 56 REMARK 465 ASP C 53 REMARK 465 ASN C 54 REMARK 465 GLU C 55 REMARK 465 ASP C 56 REMARK 465 LYS C 57 REMARK 465 LYS C 159 REMARK 465 GLU D 55 REMARK 465 ASP D 56 REMARK 465 LYS D 57 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 57 CB CG CD CE NZ REMARK 470 LYS B 159 CB CG CD CE NZ REMARK 470 THR C 32 CB OG1 CG2 REMARK 470 LYS C 58 CG CD CE NZ REMARK 470 ASN D 54 CB CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1242 O HOH A 1387 2.06 REMARK 500 OG1 THR B 34 O HOH B 1346 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1344 O HOH B 1342 2656 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MET C 65 SD MET C 65 CE -0.433 REMARK 500 MET D 65 SD MET D 65 CE -0.391 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET C 65 CG - SD - CE ANGL. DEV. = -10.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU C 27 -62.28 -98.11 REMARK 500 THR D 28 -168.13 -169.60 REMARK 500 ASP D 53 66.44 -105.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR B 126 0.07 SIDE CHAIN REMARK 500 TYR C 126 0.07 SIDE CHAIN REMARK 500 TYR D 126 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACO B 1200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACO A 1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACO C 1202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACO D 1203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD A 1002 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1I1D RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF YEAST GNA1 BOUND TO COA AND GLNAC-6P REMARK 900 RELATED ID: 1I21 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF YEAST GNA1 DBREF 1I12 A 1 159 UNP P43577 GNA1_YEAST 1 159 DBREF 1I12 B 1 159 UNP P43577 GNA1_YEAST 1 159 DBREF 1I12 C 1 159 UNP P43577 GNA1_YEAST 1 159 DBREF 1I12 D 1 159 UNP P43577 GNA1_YEAST 1 159 SEQADV 1I12 SER A 0 UNP P43577 CLONING ARTIFACT SEQADV 1I12 CYS A 39 UNP P43577 SER 39 ENGINEERED MUTATION SEQADV 1I12 SER B 0 UNP P43577 CLONING ARTIFACT SEQADV 1I12 CYS B 39 UNP P43577 SER 39 ENGINEERED MUTATION SEQADV 1I12 SER C 0 UNP P43577 CLONING ARTIFACT SEQADV 1I12 CYS C 39 UNP P43577 SER 39 ENGINEERED MUTATION SEQADV 1I12 SER D 0 UNP P43577 CLONING ARTIFACT SEQADV 1I12 CYS D 39 UNP P43577 SER 39 ENGINEERED MUTATION SEQRES 1 A 160 SER MET SER LEU PRO ASP GLY PHE TYR ILE ARG ARG MET SEQRES 2 A 160 GLU GLU GLY ASP LEU GLU GLN VAL THR GLU THR LEU LYS SEQRES 3 A 160 VAL LEU THR THR VAL GLY THR ILE THR PRO GLU SER PHE SEQRES 4 A 160 CYS LYS LEU ILE LYS TYR TRP ASN GLU ALA THR VAL TRP SEQRES 5 A 160 ASN ASP ASN GLU ASP LYS LYS ILE MET GLN TYR ASN PRO SEQRES 6 A 160 MET VAL ILE VAL ASP LYS ARG THR GLU THR VAL ALA ALA SEQRES 7 A 160 THR GLY ASN ILE ILE ILE GLU ARG LYS ILE ILE HIS GLU SEQRES 8 A 160 LEU GLY LEU CYS GLY HIS ILE GLU ASP ILE ALA VAL ASN SEQRES 9 A 160 SER LYS TYR GLN GLY GLN GLY LEU GLY LYS LEU LEU ILE SEQRES 10 A 160 ASP GLN LEU VAL THR ILE GLY PHE ASP TYR GLY CYS TYR SEQRES 11 A 160 LYS ILE ILE LEU ASP CYS ASP GLU LYS ASN VAL LYS PHE SEQRES 12 A 160 TYR GLU LYS CYS GLY PHE SER ASN ALA GLY VAL GLU MET SEQRES 13 A 160 GLN ILE ARG LYS SEQRES 1 B 160 SER MET SER LEU PRO ASP GLY PHE TYR ILE ARG ARG MET SEQRES 2 B 160 GLU GLU GLY ASP LEU GLU GLN VAL THR GLU THR LEU LYS SEQRES 3 B 160 VAL LEU THR THR VAL GLY THR ILE THR PRO GLU SER PHE SEQRES 4 B 160 CYS LYS LEU ILE LYS TYR TRP ASN GLU ALA THR VAL TRP SEQRES 5 B 160 ASN ASP ASN GLU ASP LYS LYS ILE MET GLN TYR ASN PRO SEQRES 6 B 160 MET VAL ILE VAL ASP LYS ARG THR GLU THR VAL ALA ALA SEQRES 7 B 160 THR GLY ASN ILE ILE ILE GLU ARG LYS ILE ILE HIS GLU SEQRES 8 B 160 LEU GLY LEU CYS GLY HIS ILE GLU ASP ILE ALA VAL ASN SEQRES 9 B 160 SER LYS TYR GLN GLY GLN GLY LEU GLY LYS LEU LEU ILE SEQRES 10 B 160 ASP GLN LEU VAL THR ILE GLY PHE ASP TYR GLY CYS TYR SEQRES 11 B 160 LYS ILE ILE LEU ASP CYS ASP GLU LYS ASN VAL LYS PHE SEQRES 12 B 160 TYR GLU LYS CYS GLY PHE SER ASN ALA GLY VAL GLU MET SEQRES 13 B 160 GLN ILE ARG LYS SEQRES 1 C 160 SER MET SER LEU PRO ASP GLY PHE TYR ILE ARG ARG MET SEQRES 2 C 160 GLU GLU GLY ASP LEU GLU GLN VAL THR GLU THR LEU LYS SEQRES 3 C 160 VAL LEU THR THR VAL GLY THR ILE THR PRO GLU SER PHE SEQRES 4 C 160 CYS LYS LEU ILE LYS TYR TRP ASN GLU ALA THR VAL TRP SEQRES 5 C 160 ASN ASP ASN GLU ASP LYS LYS ILE MET GLN TYR ASN PRO SEQRES 6 C 160 MET VAL ILE VAL ASP LYS ARG THR GLU THR VAL ALA ALA SEQRES 7 C 160 THR GLY ASN ILE ILE ILE GLU ARG LYS ILE ILE HIS GLU SEQRES 8 C 160 LEU GLY LEU CYS GLY HIS ILE GLU ASP ILE ALA VAL ASN SEQRES 9 C 160 SER LYS TYR GLN GLY GLN GLY LEU GLY LYS LEU LEU ILE SEQRES 10 C 160 ASP GLN LEU VAL THR ILE GLY PHE ASP TYR GLY CYS TYR SEQRES 11 C 160 LYS ILE ILE LEU ASP CYS ASP GLU LYS ASN VAL LYS PHE SEQRES 12 C 160 TYR GLU LYS CYS GLY PHE SER ASN ALA GLY VAL GLU MET SEQRES 13 C 160 GLN ILE ARG LYS SEQRES 1 D 160 SER MET SER LEU PRO ASP GLY PHE TYR ILE ARG ARG MET SEQRES 2 D 160 GLU GLU GLY ASP LEU GLU GLN VAL THR GLU THR LEU LYS SEQRES 3 D 160 VAL LEU THR THR VAL GLY THR ILE THR PRO GLU SER PHE SEQRES 4 D 160 CYS LYS LEU ILE LYS TYR TRP ASN GLU ALA THR VAL TRP SEQRES 5 D 160 ASN ASP ASN GLU ASP LYS LYS ILE MET GLN TYR ASN PRO SEQRES 6 D 160 MET VAL ILE VAL ASP LYS ARG THR GLU THR VAL ALA ALA SEQRES 7 D 160 THR GLY ASN ILE ILE ILE GLU ARG LYS ILE ILE HIS GLU SEQRES 8 D 160 LEU GLY LEU CYS GLY HIS ILE GLU ASP ILE ALA VAL ASN SEQRES 9 D 160 SER LYS TYR GLN GLY GLN GLY LEU GLY LYS LEU LEU ILE SEQRES 10 D 160 ASP GLN LEU VAL THR ILE GLY PHE ASP TYR GLY CYS TYR SEQRES 11 D 160 LYS ILE ILE LEU ASP CYS ASP GLU LYS ASN VAL LYS PHE SEQRES 12 D 160 TYR GLU LYS CYS GLY PHE SER ASN ALA GLY VAL GLU MET SEQRES 13 D 160 GLN ILE ARG LYS HET ACO A1201 51 HET IMD A1002 5 HET ACO B1200 51 HET IMD B1001 5 HET ACO C1202 51 HET ACO D1203 51 HETNAM ACO ACETYL COENZYME *A HETNAM IMD IMIDAZOLE FORMUL 5 ACO 4(C23 H38 N7 O17 P3 S) FORMUL 6 IMD 2(C3 H5 N2 1+) FORMUL 11 HOH *629(H2 O) HELIX 1 1 GLU A 13 GLY A 15 5 3 HELIX 2 2 ASP A 16 LYS A 25 1 10 HELIX 3 3 THR A 34 ALA A 48 1 15 HELIX 4 4 ILE A 87 GLY A 92 1 6 HELIX 5 5 SER A 104 GLN A 107 5 4 HELIX 6 6 GLY A 110 TYR A 126 1 17 HELIX 7 7 ASP A 136 LYS A 138 5 3 HELIX 8 8 ASN A 139 CYS A 146 1 8 HELIX 9 9 GLU B 13 GLY B 15 5 3 HELIX 10 10 ASP B 16 LYS B 25 1 10 HELIX 11 11 THR B 34 ASN B 46 1 13 HELIX 12 12 ARG B 71 GLU B 73 5 3 HELIX 13 13 ILE B 87 GLY B 92 1 6 HELIX 14 14 SER B 104 GLN B 107 5 4 HELIX 15 15 GLY B 110 GLY B 127 1 18 HELIX 16 16 ASP B 136 LYS B 138 5 3 HELIX 17 17 ASN B 139 CYS B 146 1 8 HELIX 18 18 GLU C 13 GLY C 15 5 3 HELIX 19 19 ASP C 16 LYS C 25 1 10 HELIX 20 20 THR C 34 ASN C 46 1 13 HELIX 21 21 ILE C 87 GLY C 92 1 6 HELIX 22 22 GLY C 110 GLY C 127 1 18 HELIX 23 23 ASP C 136 LYS C 138 5 3 HELIX 24 24 ASN C 139 CYS C 146 1 8 HELIX 25 25 GLU D 13 GLY D 15 5 3 HELIX 26 26 ASP D 16 LYS D 25 1 10 HELIX 27 27 THR D 34 ALA D 48 1 15 HELIX 28 28 ILE D 87 GLY D 92 1 6 HELIX 29 29 SER D 104 GLN D 107 5 4 HELIX 30 30 GLY D 110 GLY D 127 1 18 HELIX 31 31 ASP D 136 LYS D 138 5 3 HELIX 32 32 ASN D 139 CYS D 146 1 8 SHEET 1 A13 PHE A 7 ARG A 11 0 SHEET 2 A13 MET A 65 ASP A 69 -1 N VAL A 66 O ARG A 10 SHEET 3 A13 THR A 74 ARG A 85 -1 O THR A 74 N ASP A 69 SHEET 4 A13 LEU A 93 VAL A 102 -1 O CYS A 94 N GLU A 84 SHEET 5 A13 LYS A 130 CYS A 135 1 O LYS A 130 N GLY A 95 SHEET 6 A13 SER C 149 ILE C 157 -1 N VAL C 153 O CYS A 135 SHEET 7 A13 SER A 149 ARG A 158 -1 O SER A 149 N GLN C 156 SHEET 8 A13 LYS C 130 CYS C 135 -1 N ILE C 131 O ILE A 157 SHEET 9 A13 LEU C 93 VAL C 102 1 O LEU C 93 N LYS C 130 SHEET 10 A13 THR C 74 ARG C 85 -1 N THR C 78 O ALA C 101 SHEET 11 A13 TYR C 62 ASP C 69 -1 N ASN C 63 O ILE C 81 SHEET 12 A13 PHE C 7 ARG C 11 -1 O TYR C 8 N VAL C 68 SHEET 13 A13 MET C 1 LEU C 3 -1 O MET C 1 N ILE C 9 SHEET 1 B13 PHE B 7 ARG B 11 0 SHEET 2 B13 MET B 65 ASP B 69 -1 N VAL B 66 O ARG B 10 SHEET 3 B13 THR B 74 ARG B 85 -1 O THR B 74 N ASP B 69 SHEET 4 B13 LEU B 93 VAL B 102 -1 N CYS B 94 O GLU B 84 SHEET 5 B13 LYS B 130 CYS B 135 1 O LYS B 130 N GLY B 95 SHEET 6 B13 SER D 149 ARG D 158 -1 N VAL D 153 O CYS B 135 SHEET 7 B13 SER B 149 ARG B 158 -1 O SER B 149 N GLN D 156 SHEET 8 B13 LYS D 130 CYS D 135 -1 N ILE D 131 O ILE B 157 SHEET 9 B13 LEU D 93 VAL D 102 1 O LEU D 93 N LYS D 130 SHEET 10 B13 VAL D 75 ARG D 85 -1 O THR D 78 N ALA D 101 SHEET 11 B13 MET D 65 ASP D 69 -1 N MET D 65 O GLY D 79 SHEET 12 B13 PHE D 7 ARG D 11 -1 O TYR D 8 N VAL D 68 SHEET 13 B13 MET D 1 LEU D 3 -1 O MET D 1 N ILE D 9 SHEET 1 C 2 THR B 49 VAL B 50 0 SHEET 2 C 2 ILE B 59 MET B 60 -1 O ILE B 59 N VAL B 50 SHEET 1 D 2 THR D 49 VAL D 50 0 SHEET 2 D 2 ILE D 59 MET D 60 -1 O ILE D 59 N VAL D 50 SITE 1 AC1 31 LYS A 141 ACO A1201 HOH A1210 LEU B 27 SITE 2 AC1 31 ASP B 99 ILE B 100 ALA B 101 VAL B 102 SITE 3 AC1 31 GLN B 107 GLY B 108 GLN B 109 GLY B 110 SITE 4 AC1 31 LEU B 111 GLY B 112 LYS B 113 ASP B 134 SITE 5 AC1 31 ASN B 139 PHE B 142 TYR B 143 LYS B 145 SITE 6 AC1 31 HOH B1201 HOH B1238 HOH B1243 HOH B1247 SITE 7 AC1 31 HOH B1249 HOH B1250 HOH B1259 HOH B1266 SITE 8 AC1 31 HOH B1298 HOH B1306 THR D 29 SITE 1 AC2 33 VAL A 26 LEU A 27 ASP A 99 ILE A 100 SITE 2 AC2 33 ALA A 101 VAL A 102 GLN A 107 GLY A 108 SITE 3 AC2 33 GLN A 109 GLY A 110 LEU A 111 GLY A 112 SITE 4 AC2 33 LYS A 113 ASP A 134 ASN A 139 LYS A 141 SITE 5 AC2 33 PHE A 142 TYR A 143 LYS A 145 HOH A1202 SITE 6 AC2 33 HOH A1228 HOH A1236 HOH A1249 HOH A1262 SITE 7 AC2 33 HOH A1263 HOH A1274 HOH A1286 HOH A1288 SITE 8 AC2 33 HOH A1306 HOH A1333 HOH A1378 LYS B 141 SITE 9 AC2 33 ACO B1200 SITE 1 AC3 25 ASP C 99 ILE C 100 ALA C 101 VAL C 102 SITE 2 AC3 25 GLN C 107 GLY C 108 GLN C 109 GLY C 110 SITE 3 AC3 25 LEU C 111 GLY C 112 LYS C 113 ASP C 134 SITE 4 AC3 25 LYS C 138 ASN C 139 LYS C 141 PHE C 142 SITE 5 AC3 25 TYR C 143 LYS C 145 HOH C1205 HOH C1249 SITE 6 AC3 25 HOH C1250 HOH C1258 HOH C1283 HOH C1298 SITE 7 AC3 25 HOH C1312 SITE 1 AC4 21 VAL D 26 ASP D 99 ILE D 100 ALA D 101 SITE 2 AC4 21 VAL D 102 GLN D 107 GLY D 108 GLN D 109 SITE 3 AC4 21 GLY D 110 LEU D 111 GLY D 112 LYS D 113 SITE 4 AC4 21 ASP D 134 LYS D 138 ASN D 139 LYS D 141 SITE 5 AC4 21 PHE D 142 TYR D 143 LYS D 145 HOH D1207 SITE 6 AC4 21 HOH D1253 SITE 1 AC5 5 ASP B 117 VAL B 120 HOH B1258 ILE D 157 SITE 2 AC5 5 LYS D 159 SITE 1 AC6 5 ILE A 82 HIS A 96 ILE C 82 HIS C 96 SITE 2 AC6 5 HOH C1270 CRYST1 156.559 51.842 92.232 90.00 107.81 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006387 0.000000 0.002052 0.00000 SCALE2 0.000000 0.019289 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011388 0.00000