data_1I1P # _entry.id 1I1P # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.386 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1I1P pdb_00001i1p 10.2210/pdb1i1p/pdb NDB DD0038 ? ? RCSB RCSB012793 ? ? WWPDB D_1000012793 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2002-06-21 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Non-polymer description' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' struct_conn 5 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 4 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 5 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 6 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 7 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 8 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 9 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 10 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 11 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 12 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 13 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 14 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 15 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 16 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 17 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 18 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 19 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1I1P _pdbx_database_status.recvd_initial_deposition_date 2001-02-02 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Coste, F.' 1 'Shepard, W.' 2 'Zelwer, C.' 3 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary ;Description of ordered solvent molecules in a platinated decanucleotide duplex refined at 1.6A resolution against experimental MAD phases. ; 'Acta Crystallogr.,Sect.D' 58 431 440 2002 ABCRE6 DK 0907-4449 0766 ? 11856828 10.1107/S0907444901021709 1 ;Crystal Structure of a Double-Stranded DNA Containing A Cisplatin Interstrand Cross-Link At 1.63 Angstrom Resolution: Hydration At The Platinated Site ; 'Nucleic Acids Res.' 27 1837 1846 1999 NARHAD UK 0305-1048 0389 ? ? 10.1093/nar/27.8.1837 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Coste, F.' 1 ? primary 'Shepard, W.' 2 ? primary 'Zelwer, C.' 3 ? 1 'Coste, F.' 4 ? 1 'Malinge, J.M.' 5 ? 1 'Serre, L.' 6 ? 1 'Shepard, W.' 7 ? 1 'Roth, M.' 8 ? 1 'Leng, M.' 9 ? 1 'Zelwer, C.' 10 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*CP*CP*TP*CP*GP*CP*TP*CP*TP*C)-3'" 2931.917 1 ? ? ? ? 2 polymer syn "5'-D(*GP*AP*GP*AP*GP*CP*GP*AP*GP*G)-3'" 3159.079 1 ? ? ? ? 3 non-polymer syn Cisplatin 300.045 1 ? ? ? ? 4 non-polymer syn SPERMINE 202.340 1 ? ? ? ? 5 water nat water 18.015 135 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DC)(DC)(DT)(DC)(DG)(DC)(DT)(DC)(DT)(DC)' CCTCGCTCTC A ? 2 polydeoxyribonucleotide no no '(DG)(DA)(DG)(DA)(DG)(DC)(DG)(DA)(DG)(DG)' GAGAGCGAGG B ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 Cisplatin CPT 4 SPERMINE SPM 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DC n 1 3 DT n 1 4 DC n 1 5 DG n 1 6 DC n 1 7 DT n 1 8 DC n 1 9 DT n 1 10 DC n 2 1 DG n 2 2 DA n 2 3 DG n 2 4 DA n 2 5 DG n 2 6 DC n 2 7 DG n 2 8 DA n 2 9 DG n 2 10 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight CPT non-polymer . Cisplatin 'diammine(dichloro)platinum' 'Cl2 H6 N2 Pt' 300.045 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 SPM non-polymer . SPERMINE ? 'C10 H26 N4' 202.340 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DC 2 2 2 DC C A . n A 1 3 DT 3 3 3 DT T A . n A 1 4 DC 4 4 4 DC C A . n A 1 5 DG 5 5 5 DG +G A . n A 1 6 DC 6 6 6 DC C A . n A 1 7 DT 7 7 7 DT T A . n A 1 8 DC 8 8 8 DC C A . n A 1 9 DT 9 9 9 DT T A . n A 1 10 DC 10 10 10 DC C A . n B 2 1 DG 1 11 11 DG G B . n B 2 2 DA 2 12 12 DA A B . n B 2 3 DG 3 13 13 DG G B . n B 2 4 DA 4 14 14 DA A B . n B 2 5 DG 5 15 15 DG +G B . n B 2 6 DC 6 16 16 DC C B . n B 2 7 DG 7 17 17 DG G B . n B 2 8 DA 8 18 18 DA A B . n B 2 9 DG 9 19 19 DG G B . n B 2 10 DG 10 20 20 DG G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CPT 1 221 221 CPT CPT A . D 4 SPM 1 222 222 SPM SPM B . E 5 HOH 1 222 2 HOH HOH A . E 5 HOH 2 223 3 HOH HOH A . E 5 HOH 3 224 4 HOH HOH A . E 5 HOH 4 225 5 HOH HOH A . E 5 HOH 5 226 7 HOH HOH A . E 5 HOH 6 227 11 HOH HOH A . E 5 HOH 7 228 13 HOH HOH A . E 5 HOH 8 229 15 HOH HOH A . E 5 HOH 9 230 19 HOH HOH A . E 5 HOH 10 231 20 HOH HOH A . E 5 HOH 11 232 22 HOH HOH A . E 5 HOH 12 233 23 HOH HOH A . E 5 HOH 13 234 24 HOH HOH A . E 5 HOH 14 235 28 HOH HOH A . E 5 HOH 15 236 29 HOH HOH A . E 5 HOH 16 237 34 HOH HOH A . E 5 HOH 17 238 35 HOH HOH A . E 5 HOH 18 239 36 HOH HOH A . E 5 HOH 19 240 37 HOH HOH A . E 5 HOH 20 241 41 HOH HOH A . E 5 HOH 21 242 42 HOH HOH A . E 5 HOH 22 243 44 HOH HOH A . E 5 HOH 23 244 45 HOH HOH A . E 5 HOH 24 245 46 HOH HOH A . E 5 HOH 25 246 47 HOH HOH A . E 5 HOH 26 247 48 HOH HOH A . E 5 HOH 27 248 53 HOH HOH A . E 5 HOH 28 249 55 HOH HOH A . E 5 HOH 29 250 56 HOH HOH A . E 5 HOH 30 251 57 HOH HOH A . E 5 HOH 31 252 59 HOH HOH A . E 5 HOH 32 253 60 HOH HOH A . E 5 HOH 33 254 63 HOH HOH A . E 5 HOH 34 255 69 HOH HOH A . E 5 HOH 35 256 73 HOH HOH A . E 5 HOH 36 257 75 HOH HOH A . E 5 HOH 37 258 78 HOH HOH A . E 5 HOH 38 259 84 HOH HOH A . E 5 HOH 39 260 85 HOH HOH A . E 5 HOH 40 261 87 HOH HOH A . E 5 HOH 41 262 88 HOH HOH A . E 5 HOH 42 263 94 HOH HOH A . E 5 HOH 43 264 97 HOH HOH A . E 5 HOH 44 265 99 HOH HOH A . E 5 HOH 45 266 102 HOH HOH A . E 5 HOH 46 267 108 HOH HOH A . E 5 HOH 47 268 110 HOH HOH A . E 5 HOH 48 269 117 HOH HOH A . E 5 HOH 49 270 120 HOH HOH A . E 5 HOH 50 271 123 HOH HOH A . E 5 HOH 51 272 129 HOH HOH A . E 5 HOH 52 273 132 HOH HOH A . E 5 HOH 53 274 135 HOH HOH A . E 5 HOH 54 275 139 HOH HOH A . F 5 HOH 1 223 6 HOH HOH B . F 5 HOH 2 224 8 HOH HOH B . F 5 HOH 3 225 9 HOH HOH B . F 5 HOH 4 226 10 HOH HOH B . F 5 HOH 5 227 12 HOH HOH B . F 5 HOH 6 228 14 HOH HOH B . F 5 HOH 7 229 16 HOH HOH B . F 5 HOH 8 230 17 HOH HOH B . F 5 HOH 9 231 18 HOH HOH B . F 5 HOH 10 232 21 HOH HOH B . F 5 HOH 11 233 25 HOH HOH B . F 5 HOH 12 234 26 HOH HOH B . F 5 HOH 13 235 27 HOH HOH B . F 5 HOH 14 236 30 HOH HOH B . F 5 HOH 15 237 31 HOH HOH B . F 5 HOH 16 238 32 HOH HOH B . F 5 HOH 17 239 33 HOH HOH B . F 5 HOH 18 240 38 HOH HOH B . F 5 HOH 19 241 39 HOH HOH B . F 5 HOH 20 242 40 HOH HOH B . F 5 HOH 21 243 43 HOH HOH B . F 5 HOH 22 244 49 HOH HOH B . F 5 HOH 23 245 50 HOH HOH B . F 5 HOH 24 246 51 HOH HOH B . F 5 HOH 25 247 52 HOH HOH B . F 5 HOH 26 248 54 HOH HOH B . F 5 HOH 27 249 58 HOH HOH B . F 5 HOH 28 250 61 HOH HOH B . F 5 HOH 29 251 62 HOH HOH B . F 5 HOH 30 252 64 HOH HOH B . F 5 HOH 31 253 65 HOH HOH B . F 5 HOH 32 254 66 HOH HOH B . F 5 HOH 33 255 67 HOH HOH B . F 5 HOH 34 256 68 HOH HOH B . F 5 HOH 35 257 70 HOH HOH B . F 5 HOH 36 258 71 HOH HOH B . F 5 HOH 37 259 72 HOH HOH B . F 5 HOH 38 260 74 HOH HOH B . F 5 HOH 39 261 76 HOH HOH B . F 5 HOH 40 262 77 HOH HOH B . F 5 HOH 41 263 79 HOH HOH B . F 5 HOH 42 264 80 HOH HOH B . F 5 HOH 43 265 81 HOH HOH B . F 5 HOH 44 266 82 HOH HOH B . F 5 HOH 45 267 83 HOH HOH B . F 5 HOH 46 268 86 HOH HOH B . F 5 HOH 47 269 89 HOH HOH B . F 5 HOH 48 270 90 HOH HOH B . F 5 HOH 49 271 91 HOH HOH B . F 5 HOH 50 272 92 HOH HOH B . F 5 HOH 51 273 93 HOH HOH B . F 5 HOH 52 274 95 HOH HOH B . F 5 HOH 53 275 96 HOH HOH B . F 5 HOH 54 276 98 HOH HOH B . F 5 HOH 55 277 100 HOH HOH B . F 5 HOH 56 278 101 HOH HOH B . F 5 HOH 57 279 103 HOH HOH B . F 5 HOH 58 280 105 HOH HOH B . F 5 HOH 59 281 106 HOH HOH B . F 5 HOH 60 282 107 HOH HOH B . F 5 HOH 61 283 109 HOH HOH B . F 5 HOH 62 284 111 HOH HOH B . F 5 HOH 63 285 112 HOH HOH B . F 5 HOH 64 286 113 HOH HOH B . F 5 HOH 65 287 114 HOH HOH B . F 5 HOH 66 288 115 HOH HOH B . F 5 HOH 67 289 116 HOH HOH B . F 5 HOH 68 290 118 HOH HOH B . F 5 HOH 69 291 119 HOH HOH B . F 5 HOH 70 292 121 HOH HOH B . F 5 HOH 71 293 124 HOH HOH B . F 5 HOH 72 294 125 HOH HOH B . F 5 HOH 73 295 126 HOH HOH B . F 5 HOH 74 296 127 HOH HOH B . F 5 HOH 75 297 128 HOH HOH B . F 5 HOH 76 298 130 HOH HOH B . F 5 HOH 77 299 131 HOH HOH B . F 5 HOH 78 300 133 HOH HOH B . F 5 HOH 79 301 134 HOH HOH B . F 5 HOH 80 302 136 HOH HOH B . F 5 HOH 81 303 138 HOH HOH B . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 N 1 B SPM 222 ? N1 ? D SPM 1 N1 2 1 N 1 B SPM 222 ? C2 ? D SPM 1 C2 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SHARP phasing . ? 1 REFMAC refinement . ? 2 MOSFLM 'data reduction' . ? 3 CCP4 'data scaling' '(SCALA)' ? 4 # _cell.entry_id 1I1P _cell.length_a 42.890 _cell.length_b 29.980 _cell.length_c 46.570 _cell.angle_alpha 90.00 _cell.angle_beta 95.98 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1I1P _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 # _exptl.entry_id 1I1P _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.34 _exptl_crystal.density_percent_sol 47.43 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.2 _exptl_crystal_grow.pdbx_details 'sodium cacodylate, NaCl, KCl, spermine, MPD, pH 6.2, VAPOR DIFFUSION, HANGING DROP, temperature 277K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 'sodium cacodylate' ? ? ? 1 2 1 NaCl ? ? ? 1 3 1 KCl ? ? ? 1 4 1 spermine ? ? ? 1 5 1 MPD ? ? ? 1 6 2 'sodium cacodylate' ? ? ? 1 7 2 NaCl ? ? ? 1 8 2 KCl ? ? ? 1 9 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 1997-11-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'DOUBLE CRYSTAL' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 1.0906 1.0 2 1.0718 1.0 3 1.0711 1.0 4 1.0301 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'LURE BEAMLINE DW21B' _diffrn_source.pdbx_synchrotron_site LURE _diffrn_source.pdbx_synchrotron_beamline DW21B _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0906,1.0718,1.0711,1.0301 # _reflns.entry_id 1I1P _reflns.observed_criterion_sigma_I 4 _reflns.observed_criterion_sigma_F 1 _reflns.d_resolution_low 20 _reflns.d_resolution_high 1.63 _reflns.number_obs 7333 _reflns.number_all 7353 _reflns.percent_possible_obs 93.1 _reflns.pdbx_Rmerge_I_obs 0.0370000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 14 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.5 _reflns.R_free_details ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.63 _reflns_shell.d_res_low 1.72 _reflns_shell.percent_possible_all 97 _reflns_shell.Rmerge_I_obs 0.0700000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 3.4 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1I1P _refine.ls_number_reflns_obs 7322 _refine.ls_number_reflns_all 7353 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_d_res_low 20 _refine.ls_d_res_high 1.63 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1590000 _refine.ls_R_factor_R_free 0.1880000 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 340 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'Hendrikson & Konnert' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.correlation_coeff_Fo_to_Fc ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 404 _refine_hist.pdbx_number_atoms_ligand 15 _refine_hist.number_atoms_solvent 135 _refine_hist.number_atoms_total 554 _refine_hist.d_res_high 1.63 _refine_hist.d_res_low 20 # _database_PDB_matrix.entry_id 1I1P _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1I1P _struct.title ;REFINEMENT INCLUDING EXPERIMENTAL MAD PHASES ALLOWS AN EXHAUSTIVE STUDY OF ORDERED SOLVENT MOLECULES FOR A PLATINATED DECANUCLEOTIDE ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1I1P _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'ANTITUMOR DRUG, CIS-DDP, INTERSTRAND CROSS-LINK, DEOXYRIBONUCLEIC ACID, SPERMINE, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? # loop_ _struct_ref.id _struct_ref.entity_id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 1 PDB 1I1P 1I1P ? ? ? 2 2 PDB 1I1P 1I1P ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1I1P A 1 ? 10 ? 1I1P 1 ? 10 ? 1 10 2 2 1I1P B 1 ? 10 ? 1I1P 11 ? 20 ? 11 20 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DG 5 N7 ? ? ? 1_555 C CPT . PT1 ? ? A DG 5 A CPT 221 1_555 ? ? ? ? ? ? ? 2.010 ? ? metalc2 metalc ? ? C CPT . PT1 ? ? ? 1_555 B DG 5 N7 ? ? A CPT 221 B DG 15 1_555 ? ? ? ? ? ? ? 1.991 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 1 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 1 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 1 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 9 N1 ? ? A DC 2 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 9 O6 ? ? A DC 2 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 9 N2 ? ? A DC 2 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DT 3 N3 ? ? ? 1_555 B DA 8 N1 ? ? A DT 3 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DT 3 O4 ? ? ? 1_555 B DA 8 N6 ? ? A DT 3 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 4 N3 ? ? ? 1_555 B DG 7 N1 ? ? A DC 4 B DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 4 N4 ? ? ? 1_555 B DG 7 O6 ? ? A DC 4 B DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 4 O2 ? ? ? 1_555 B DG 7 N2 ? ? A DC 4 B DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 4 N1 ? ? A DT 7 B DA 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DT 7 O4 ? ? ? 1_555 B DA 4 N6 ? ? A DT 7 B DA 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 8 N3 ? ? ? 1_555 B DG 3 N1 ? ? A DC 8 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 8 N4 ? ? ? 1_555 B DG 3 O6 ? ? A DC 8 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 8 O2 ? ? ? 1_555 B DG 3 N2 ? ? A DC 8 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DT 9 N3 ? ? ? 1_555 B DA 2 N1 ? ? A DT 9 B DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DT 9 O4 ? ? ? 1_555 B DA 2 N6 ? ? A DT 9 B DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 10 N3 ? ? ? 1_555 B DG 1 N1 ? ? A DC 10 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 10 N4 ? ? ? 1_555 B DG 1 O6 ? ? A DC 10 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 10 O2 ? ? ? 1_555 B DG 1 N2 ? ? A DC 10 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 N7 ? A DG 5 ? A DG 5 ? 1_555 PT1 ? C CPT . ? A CPT 221 ? 1_555 N1 ? C CPT . ? A CPT 221 ? 1_555 90.5 ? 2 N7 ? A DG 5 ? A DG 5 ? 1_555 PT1 ? C CPT . ? A CPT 221 ? 1_555 N2 ? C CPT . ? A CPT 221 ? 1_555 174.5 ? 3 N1 ? C CPT . ? A CPT 221 ? 1_555 PT1 ? C CPT . ? A CPT 221 ? 1_555 N2 ? C CPT . ? A CPT 221 ? 1_555 85.3 ? 4 N7 ? A DG 5 ? A DG 5 ? 1_555 PT1 ? C CPT . ? A CPT 221 ? 1_555 N7 ? B DG 5 ? B DG 15 ? 1_555 86.4 ? 5 N1 ? C CPT . ? A CPT 221 ? 1_555 PT1 ? C CPT . ? A CPT 221 ? 1_555 N7 ? B DG 5 ? B DG 15 ? 1_555 176.5 ? 6 N2 ? C CPT . ? A CPT 221 ? 1_555 PT1 ? C CPT . ? A CPT 221 ? 1_555 N7 ? B DG 5 ? B DG 15 ? 1_555 97.8 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CPT 221 ? 8 'BINDING SITE FOR RESIDUE CPT A 221' AC2 Software B SPM 222 ? 6 'BINDING SITE FOR RESIDUE SPM B 222' 1 ? ? ? ? ? ? ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 DG A 5 ? DG A 5 . ? 1_555 ? 2 AC1 8 DT A 7 ? DT A 7 . ? 1_555 ? 3 AC1 8 DC A 8 ? DC A 8 . ? 1_555 ? 4 AC1 8 HOH E . ? HOH A 235 . ? 1_555 ? 5 AC1 8 HOH E . ? HOH A 249 . ? 1_555 ? 6 AC1 8 HOH E . ? HOH A 259 . ? 1_555 ? 7 AC1 8 DG B 5 ? DG B 15 . ? 1_555 ? 8 AC1 8 HOH F . ? HOH B 233 . ? 1_555 ? 9 AC2 6 DC A 2 ? DC A 2 . ? 4_557 ? 10 AC2 6 DT A 3 ? DT A 3 . ? 4_557 ? 11 AC2 6 DC B 6 ? DC B 16 . ? 1_555 ? 12 AC2 6 DG B 7 ? DG B 17 . ? 1_555 ? 13 AC2 6 HOH F . ? HOH B 263 . ? 1_555 ? 14 AC2 6 HOH F . ? HOH B 269 . ? 1_555 ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 263 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 272 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.11 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O5'" A DC 1 ? ? "C5'" A DC 1 ? ? "C4'" A DC 1 ? ? 104.48 109.40 -4.92 0.80 N 2 1 "O4'" A DC 1 ? ? "C4'" A DC 1 ? ? "C3'" A DC 1 ? ? 101.52 104.50 -2.98 0.40 N 3 1 N3 A DC 2 ? ? C4 A DC 2 ? ? N4 A DC 2 ? ? 122.99 118.00 4.99 0.70 N 4 1 "O3'" A DT 3 ? ? P A DC 4 ? ? OP2 A DC 4 ? ? 130.06 110.50 19.56 1.10 Y 5 1 "O5'" A DG 5 ? ? "C5'" A DG 5 ? ? "C4'" A DG 5 ? ? 102.62 109.40 -6.78 0.80 N 6 1 C4 A DG 5 ? ? C5 A DG 5 ? ? N7 A DG 5 ? ? 108.17 110.80 -2.63 0.40 N 7 1 N9 A DG 5 ? ? C4 A DG 5 ? ? C5 A DG 5 ? ? 108.14 105.40 2.74 0.40 N 8 1 N1 A DG 5 ? ? C6 A DG 5 ? ? O6 A DG 5 ? ? 115.97 119.90 -3.93 0.60 N 9 1 C6 A DT 7 ? ? N1 A DT 7 ? ? C2 A DT 7 ? ? 124.45 121.30 3.15 0.50 N 10 1 C5 A DT 7 ? ? C6 A DT 7 ? ? N1 A DT 7 ? ? 118.97 123.70 -4.73 0.60 N 11 1 "O3'" A DT 7 ? ? P A DC 8 ? ? OP2 A DC 8 ? ? 118.11 110.50 7.61 1.10 Y 12 1 "O4'" A DC 8 ? ? "C1'" A DC 8 ? ? N1 A DC 8 ? ? 103.14 108.00 -4.86 0.70 N 13 1 "O3'" A DC 8 ? ? P A DT 9 ? ? OP2 A DT 9 ? ? 118.30 110.50 7.80 1.10 Y 14 1 "O3'" A DT 9 ? ? P A DC 10 ? ? OP2 A DC 10 ? ? 121.28 110.50 10.78 1.10 Y 15 1 "C3'" B DA 12 ? ? "C2'" B DA 12 ? ? "C1'" B DA 12 ? ? 96.48 102.40 -5.92 0.80 N 16 1 C6 B DA 12 ? ? N1 B DA 12 ? ? C2 B DA 12 ? ? 124.16 118.60 5.56 0.60 N 17 1 N1 B DA 12 ? ? C2 B DA 12 ? ? N3 B DA 12 ? ? 124.44 129.30 -4.86 0.50 N 18 1 N1 B DA 12 ? ? C6 B DA 12 ? ? N6 B DA 12 ? ? 122.35 118.60 3.75 0.60 N 19 1 OP1 B DA 14 ? ? P B DA 14 ? ? OP2 B DA 14 ? ? 129.42 119.60 9.82 1.50 N 20 1 "O5'" B DG 15 ? ? "C5'" B DG 15 ? ? "C4'" B DG 15 ? ? 104.28 109.40 -5.12 0.80 N 21 1 "O4'" B DG 17 ? ? "C1'" B DG 17 ? ? N9 B DG 17 ? ? 102.54 108.00 -5.46 0.70 N 22 1 "O4'" B DA 18 ? ? "C1'" B DA 18 ? ? N9 B DA 18 ? ? 111.39 108.30 3.09 0.30 N # _struct_site_keywords.site_id 1 _struct_site_keywords.text 'COVALENT PT-N BONDS' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal CPT PT1 PT N N 1 CPT N1 N N N 2 CPT N2 N N N 3 CPT H11 H N N 4 CPT H12 H N N 5 CPT H21 H N N 6 CPT H22 H N N 7 CPT CL2 CL N N 8 CPT CL1 CL N N 9 CPT H13 H N N 10 CPT H23 H N N 11 DA OP3 O N N 12 DA P P N N 13 DA OP1 O N N 14 DA OP2 O N N 15 DA "O5'" O N N 16 DA "C5'" C N N 17 DA "C4'" C N R 18 DA "O4'" O N N 19 DA "C3'" C N S 20 DA "O3'" O N N 21 DA "C2'" C N N 22 DA "C1'" C N R 23 DA N9 N Y N 24 DA C8 C Y N 25 DA N7 N Y N 26 DA C5 C Y N 27 DA C6 C Y N 28 DA N6 N N N 29 DA N1 N Y N 30 DA C2 C Y N 31 DA N3 N Y N 32 DA C4 C Y N 33 DA HOP3 H N N 34 DA HOP2 H N N 35 DA "H5'" H N N 36 DA "H5''" H N N 37 DA "H4'" H N N 38 DA "H3'" H N N 39 DA "HO3'" H N N 40 DA "H2'" H N N 41 DA "H2''" H N N 42 DA "H1'" H N N 43 DA H8 H N N 44 DA H61 H N N 45 DA H62 H N N 46 DA H2 H N N 47 DC OP3 O N N 48 DC P P N N 49 DC OP1 O N N 50 DC OP2 O N N 51 DC "O5'" O N N 52 DC "C5'" C N N 53 DC "C4'" C N R 54 DC "O4'" O N N 55 DC "C3'" C N S 56 DC "O3'" O N N 57 DC "C2'" C N N 58 DC "C1'" C N R 59 DC N1 N N N 60 DC C2 C N N 61 DC O2 O N N 62 DC N3 N N N 63 DC C4 C N N 64 DC N4 N N N 65 DC C5 C N N 66 DC C6 C N N 67 DC HOP3 H N N 68 DC HOP2 H N N 69 DC "H5'" H N N 70 DC "H5''" H N N 71 DC "H4'" H N N 72 DC "H3'" H N N 73 DC "HO3'" H N N 74 DC "H2'" H N N 75 DC "H2''" H N N 76 DC "H1'" H N N 77 DC H41 H N N 78 DC H42 H N N 79 DC H5 H N N 80 DC H6 H N N 81 DG OP3 O N N 82 DG P P N N 83 DG OP1 O N N 84 DG OP2 O N N 85 DG "O5'" O N N 86 DG "C5'" C N N 87 DG "C4'" C N R 88 DG "O4'" O N N 89 DG "C3'" C N S 90 DG "O3'" O N N 91 DG "C2'" C N N 92 DG "C1'" C N R 93 DG N9 N Y N 94 DG C8 C Y N 95 DG N7 N Y N 96 DG C5 C Y N 97 DG C6 C N N 98 DG O6 O N N 99 DG N1 N N N 100 DG C2 C N N 101 DG N2 N N N 102 DG N3 N N N 103 DG C4 C Y N 104 DG HOP3 H N N 105 DG HOP2 H N N 106 DG "H5'" H N N 107 DG "H5''" H N N 108 DG "H4'" H N N 109 DG "H3'" H N N 110 DG "HO3'" H N N 111 DG "H2'" H N N 112 DG "H2''" H N N 113 DG "H1'" H N N 114 DG H8 H N N 115 DG H1 H N N 116 DG H21 H N N 117 DG H22 H N N 118 DT OP3 O N N 119 DT P P N N 120 DT OP1 O N N 121 DT OP2 O N N 122 DT "O5'" O N N 123 DT "C5'" C N N 124 DT "C4'" C N R 125 DT "O4'" O N N 126 DT "C3'" C N S 127 DT "O3'" O N N 128 DT "C2'" C N N 129 DT "C1'" C N R 130 DT N1 N N N 131 DT C2 C N N 132 DT O2 O N N 133 DT N3 N N N 134 DT C4 C N N 135 DT O4 O N N 136 DT C5 C N N 137 DT C7 C N N 138 DT C6 C N N 139 DT HOP3 H N N 140 DT HOP2 H N N 141 DT "H5'" H N N 142 DT "H5''" H N N 143 DT "H4'" H N N 144 DT "H3'" H N N 145 DT "HO3'" H N N 146 DT "H2'" H N N 147 DT "H2''" H N N 148 DT "H1'" H N N 149 DT H3 H N N 150 DT H71 H N N 151 DT H72 H N N 152 DT H73 H N N 153 DT H6 H N N 154 HOH O O N N 155 HOH H1 H N N 156 HOH H2 H N N 157 SPM N1 N N N 158 SPM C2 C N N 159 SPM C3 C N N 160 SPM C4 C N N 161 SPM N5 N N N 162 SPM C6 C N N 163 SPM C7 C N N 164 SPM C8 C N N 165 SPM C9 C N N 166 SPM N10 N N N 167 SPM C11 C N N 168 SPM C12 C N N 169 SPM C13 C N N 170 SPM N14 N N N 171 SPM HN11 H N N 172 SPM HN12 H N N 173 SPM H21 H N N 174 SPM H22 H N N 175 SPM H31 H N N 176 SPM H32 H N N 177 SPM H41 H N N 178 SPM H42 H N N 179 SPM HN5 H N N 180 SPM H61 H N N 181 SPM H62 H N N 182 SPM H71 H N N 183 SPM H72 H N N 184 SPM H81 H N N 185 SPM H82 H N N 186 SPM H91 H N N 187 SPM H92 H N N 188 SPM HN0 H N N 189 SPM H111 H N N 190 SPM H112 H N N 191 SPM H121 H N N 192 SPM H122 H N N 193 SPM H131 H N N 194 SPM H132 H N N 195 SPM HN41 H N N 196 SPM HN42 H N N 197 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal CPT PT1 N1 sing N N 1 CPT PT1 N2 sing N N 2 CPT N1 H11 sing N N 3 CPT N1 H12 sing N N 4 CPT N1 H13 sing N N 5 CPT N2 H21 sing N N 6 CPT N2 H22 sing N N 7 CPT N2 H23 sing N N 8 CPT CL2 PT1 sing N N 9 CPT CL1 PT1 sing N N 10 DA OP3 P sing N N 11 DA OP3 HOP3 sing N N 12 DA P OP1 doub N N 13 DA P OP2 sing N N 14 DA P "O5'" sing N N 15 DA OP2 HOP2 sing N N 16 DA "O5'" "C5'" sing N N 17 DA "C5'" "C4'" sing N N 18 DA "C5'" "H5'" sing N N 19 DA "C5'" "H5''" sing N N 20 DA "C4'" "O4'" sing N N 21 DA "C4'" "C3'" sing N N 22 DA "C4'" "H4'" sing N N 23 DA "O4'" "C1'" sing N N 24 DA "C3'" "O3'" sing N N 25 DA "C3'" "C2'" sing N N 26 DA "C3'" "H3'" sing N N 27 DA "O3'" "HO3'" sing N N 28 DA "C2'" "C1'" sing N N 29 DA "C2'" "H2'" sing N N 30 DA "C2'" "H2''" sing N N 31 DA "C1'" N9 sing N N 32 DA "C1'" "H1'" sing N N 33 DA N9 C8 sing Y N 34 DA N9 C4 sing Y N 35 DA C8 N7 doub Y N 36 DA C8 H8 sing N N 37 DA N7 C5 sing Y N 38 DA C5 C6 sing Y N 39 DA C5 C4 doub Y N 40 DA C6 N6 sing N N 41 DA C6 N1 doub Y N 42 DA N6 H61 sing N N 43 DA N6 H62 sing N N 44 DA N1 C2 sing Y N 45 DA C2 N3 doub Y N 46 DA C2 H2 sing N N 47 DA N3 C4 sing Y N 48 DC OP3 P sing N N 49 DC OP3 HOP3 sing N N 50 DC P OP1 doub N N 51 DC P OP2 sing N N 52 DC P "O5'" sing N N 53 DC OP2 HOP2 sing N N 54 DC "O5'" "C5'" sing N N 55 DC "C5'" "C4'" sing N N 56 DC "C5'" "H5'" sing N N 57 DC "C5'" "H5''" sing N N 58 DC "C4'" "O4'" sing N N 59 DC "C4'" "C3'" sing N N 60 DC "C4'" "H4'" sing N N 61 DC "O4'" "C1'" sing N N 62 DC "C3'" "O3'" sing N N 63 DC "C3'" "C2'" sing N N 64 DC "C3'" "H3'" sing N N 65 DC "O3'" "HO3'" sing N N 66 DC "C2'" "C1'" sing N N 67 DC "C2'" "H2'" sing N N 68 DC "C2'" "H2''" sing N N 69 DC "C1'" N1 sing N N 70 DC "C1'" "H1'" sing N N 71 DC N1 C2 sing N N 72 DC N1 C6 sing N N 73 DC C2 O2 doub N N 74 DC C2 N3 sing N N 75 DC N3 C4 doub N N 76 DC C4 N4 sing N N 77 DC C4 C5 sing N N 78 DC N4 H41 sing N N 79 DC N4 H42 sing N N 80 DC C5 C6 doub N N 81 DC C5 H5 sing N N 82 DC C6 H6 sing N N 83 DG OP3 P sing N N 84 DG OP3 HOP3 sing N N 85 DG P OP1 doub N N 86 DG P OP2 sing N N 87 DG P "O5'" sing N N 88 DG OP2 HOP2 sing N N 89 DG "O5'" "C5'" sing N N 90 DG "C5'" "C4'" sing N N 91 DG "C5'" "H5'" sing N N 92 DG "C5'" "H5''" sing N N 93 DG "C4'" "O4'" sing N N 94 DG "C4'" "C3'" sing N N 95 DG "C4'" "H4'" sing N N 96 DG "O4'" "C1'" sing N N 97 DG "C3'" "O3'" sing N N 98 DG "C3'" "C2'" sing N N 99 DG "C3'" "H3'" sing N N 100 DG "O3'" "HO3'" sing N N 101 DG "C2'" "C1'" sing N N 102 DG "C2'" "H2'" sing N N 103 DG "C2'" "H2''" sing N N 104 DG "C1'" N9 sing N N 105 DG "C1'" "H1'" sing N N 106 DG N9 C8 sing Y N 107 DG N9 C4 sing Y N 108 DG C8 N7 doub Y N 109 DG C8 H8 sing N N 110 DG N7 C5 sing Y N 111 DG C5 C6 sing N N 112 DG C5 C4 doub Y N 113 DG C6 O6 doub N N 114 DG C6 N1 sing N N 115 DG N1 C2 sing N N 116 DG N1 H1 sing N N 117 DG C2 N2 sing N N 118 DG C2 N3 doub N N 119 DG N2 H21 sing N N 120 DG N2 H22 sing N N 121 DG N3 C4 sing N N 122 DT OP3 P sing N N 123 DT OP3 HOP3 sing N N 124 DT P OP1 doub N N 125 DT P OP2 sing N N 126 DT P "O5'" sing N N 127 DT OP2 HOP2 sing N N 128 DT "O5'" "C5'" sing N N 129 DT "C5'" "C4'" sing N N 130 DT "C5'" "H5'" sing N N 131 DT "C5'" "H5''" sing N N 132 DT "C4'" "O4'" sing N N 133 DT "C4'" "C3'" sing N N 134 DT "C4'" "H4'" sing N N 135 DT "O4'" "C1'" sing N N 136 DT "C3'" "O3'" sing N N 137 DT "C3'" "C2'" sing N N 138 DT "C3'" "H3'" sing N N 139 DT "O3'" "HO3'" sing N N 140 DT "C2'" "C1'" sing N N 141 DT "C2'" "H2'" sing N N 142 DT "C2'" "H2''" sing N N 143 DT "C1'" N1 sing N N 144 DT "C1'" "H1'" sing N N 145 DT N1 C2 sing N N 146 DT N1 C6 sing N N 147 DT C2 O2 doub N N 148 DT C2 N3 sing N N 149 DT N3 C4 sing N N 150 DT N3 H3 sing N N 151 DT C4 O4 doub N N 152 DT C4 C5 sing N N 153 DT C5 C7 sing N N 154 DT C5 C6 doub N N 155 DT C7 H71 sing N N 156 DT C7 H72 sing N N 157 DT C7 H73 sing N N 158 DT C6 H6 sing N N 159 HOH O H1 sing N N 160 HOH O H2 sing N N 161 SPM N1 C2 sing N N 162 SPM N1 HN11 sing N N 163 SPM N1 HN12 sing N N 164 SPM C2 C3 sing N N 165 SPM C2 H21 sing N N 166 SPM C2 H22 sing N N 167 SPM C3 C4 sing N N 168 SPM C3 H31 sing N N 169 SPM C3 H32 sing N N 170 SPM C4 N5 sing N N 171 SPM C4 H41 sing N N 172 SPM C4 H42 sing N N 173 SPM N5 C6 sing N N 174 SPM N5 HN5 sing N N 175 SPM C6 C7 sing N N 176 SPM C6 H61 sing N N 177 SPM C6 H62 sing N N 178 SPM C7 C8 sing N N 179 SPM C7 H71 sing N N 180 SPM C7 H72 sing N N 181 SPM C8 C9 sing N N 182 SPM C8 H81 sing N N 183 SPM C8 H82 sing N N 184 SPM C9 N10 sing N N 185 SPM C9 H91 sing N N 186 SPM C9 H92 sing N N 187 SPM N10 C11 sing N N 188 SPM N10 HN0 sing N N 189 SPM C11 C12 sing N N 190 SPM C11 H111 sing N N 191 SPM C11 H112 sing N N 192 SPM C12 C13 sing N N 193 SPM C12 H121 sing N N 194 SPM C12 H122 sing N N 195 SPM C13 N14 sing N N 196 SPM C13 H131 sing N N 197 SPM C13 H132 sing N N 198 SPM N14 HN41 sing N N 199 SPM N14 HN42 sing N N 200 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1I1P 'double helix' 1I1P 'b-form double helix' 1I1P 'internal loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 10 1_555 0.296 -0.121 0.207 -8.945 -12.537 -0.505 1 A_DC1:DG20_B A 1 ? B 20 ? 19 1 1 A DC 2 1_555 B DG 9 1_555 0.099 -0.102 0.404 -6.779 -11.501 -1.096 2 A_DC2:DG19_B A 2 ? B 19 ? 19 1 1 A DT 3 1_555 B DA 8 1_555 -0.143 -0.055 -0.024 -1.345 -5.984 4.791 3 A_DT3:DA18_B A 3 ? B 18 ? 20 1 1 A DC 4 1_555 B DG 7 1_555 0.286 -0.127 -0.292 12.739 2.844 -1.726 4 A_DC4:DG17_B A 4 ? B 17 ? 19 1 1 A DT 7 1_555 B DA 4 1_555 -0.122 -0.079 0.125 -9.941 -11.031 2.685 5 A_DT7:DA14_B A 7 ? B 14 ? 20 1 1 A DC 8 1_555 B DG 3 1_555 0.261 -0.181 0.093 -9.872 -9.137 -0.011 6 A_DC8:DG13_B A 8 ? B 13 ? 19 1 1 A DT 9 1_555 B DA 2 1_555 -0.276 -0.164 0.082 -8.651 -5.986 -1.794 7 A_DT9:DA12_B A 9 ? B 12 ? 20 1 1 A DC 10 1_555 B DG 1 1_555 0.262 -0.203 -0.254 -0.477 -5.401 -1.841 8 A_DC10:DG11_B A 10 ? B 11 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 10 1_555 A DC 2 1_555 B DG 9 1_555 0.631 -1.300 3.325 0.021 1.552 36.100 -2.317 -1.014 3.269 2.503 -0.034 36.132 1 AA_DC1DC2:DG19DG20_BB A 1 ? B 20 ? A 2 ? B 19 ? 1 A DC 2 1_555 B DG 9 1_555 A DT 3 1_555 B DA 8 1_555 -1.300 -1.029 3.268 4.113 2.442 21.329 -3.614 4.945 2.835 6.494 -10.934 21.853 2 AA_DC2DT3:DA18DG19_BB A 2 ? B 19 ? A 3 ? B 18 ? 1 A DT 3 1_555 B DA 8 1_555 A DC 4 1_555 B DG 7 1_555 -0.776 0.714 3.180 5.445 14.482 23.148 -2.045 2.944 2.875 31.920 -12.002 27.784 3 AA_DT3DC4:DG17DA18_BB A 3 ? B 18 ? A 4 ? B 17 ? 1 A DT 7 1_555 B DA 4 1_555 A DC 8 1_555 B DG 3 1_555 -0.412 -0.111 3.208 -0.786 1.687 38.070 -0.380 0.533 3.208 2.584 1.204 38.114 4 AA_DT7DC8:DG13DA14_BB A 7 ? B 14 ? A 8 ? B 13 ? 1 A DC 8 1_555 B DG 3 1_555 A DT 9 1_555 B DA 2 1_555 0.838 0.036 3.224 3.266 2.072 33.788 -0.269 -0.912 3.285 3.550 -5.596 34.003 5 AA_DC8DT9:DA12DG13_BB A 8 ? B 13 ? A 9 ? B 12 ? 1 A DT 9 1_555 B DA 2 1_555 A DC 10 1_555 B DG 1 1_555 -0.030 -0.058 3.141 3.419 0.603 31.710 -0.211 0.652 3.119 1.099 -6.234 31.895 6 AA_DT9DC10:DG11DA12_BB A 9 ? B 12 ? A 10 ? B 11 ? # _atom_sites.entry_id 1I1P _atom_sites.fract_transf_matrix[1][1] 0.023315 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.002442 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.033356 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.021591 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P PT # loop_