HEADER ENDOCYTOSIS/EXOCYTOSIS 12-FEB-01 1I31 TITLE MU2 ADAPTIN SUBUNIT (AP50) OF AP2 CLATHRIN ADAPTOR, COMPLEXED WITH TITLE 2 EGFR INTERNALIZATION PEPTIDE FYRALM AT 2.5 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: CLATHRIN COAT ASSEMBLY PROTEIN AP50; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 122-435; COMPND 5 SYNONYM: MU2 ADAPTIN OF AP2 ADAPTOR; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: EPIDERMAL GROWTH FACTOR RECEPTOR; COMPND 9 CHAIN: P; COMPND 10 FRAGMENT: RESIDUES 998-1003; COMPND 11 SYNONYM: EGFR; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: AP50; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PPROEX; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: THE HEXAPEPTIDE OF EPIDERMAL GROWTH FACTOR RECEPTOR SOURCE 14 WAS CHEMICALLY SYNTHESIZED KEYWDS BETA-SANDWICH, PEPTIDE-BINDING SITE, PROTEIN-PEPTIDE COMPLEX, KEYWDS 2 CLATHRIN ADAPTOR, ENDOCYTOSIS-EXOCYTOSIS COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.MODIS,W.BOLL,I.RAPOPORT,T.KIRCHHAUSEN REVDAT 4 09-AUG-23 1I31 1 REMARK REVDAT 3 24-FEB-09 1I31 1 VERSN REVDAT 2 30-SEP-03 1I31 1 DBREF REVDAT 1 21-FEB-01 1I31 0 JRNL AUTH Y.MODIS,W.BOLL,I.RAPOPORT,T.KIRCHHAUSEN JRNL TITL MU2 ADAPTIN SUBUNIT (AP50) OF AP2 CLATHRIN ADAPTOR, JRNL TITL 2 COMPLEXED WITH EGFR INTERNALIZATION PEPTIDE FYRALM AT 2.5 A JRNL TITL 3 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.J.OWEN,P.R.EVANS REMARK 1 TITL A STRUCTURAL EXPLANATION FOR THE RECOGNITION OF REMARK 1 TITL 2 TYROSINE-BASED ENDOCYTIC SIGNALS REMARK 1 REF SCIENCE V. 282 1327 1998 REMARK 1 REFN ISSN 0036-8075 REMARK 1 DOI 10.1126/SCIENCE.282.5392.1327 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 20796 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.247 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1123 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2122 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 47 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 74.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : -0.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.21400 REMARK 3 B22 (A**2) : 0.26800 REMARK 3 B33 (A**2) : -1.09500 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.26700 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.019 ; 0.019 REMARK 3 ANGLE DISTANCE (A) : 0.055 ; 0.055 REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : 0.050 ; 0.061 REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : 0.025 ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : 0.204 ; 0.150 REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : 0.215 ; 0.300 REMARK 3 MULTIPLE TORSION (A) : 0.267 ; 0.300 REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : 0.178 ; 0.300 REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : 3.700 ; 3.000 REMARK 3 STAGGERED (DEGREES) : 19.500; 15.000 REMARK 3 TRANSVERSE (DEGREES) : 21.500; 20.000 REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.487 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 4.021 ; 3.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 3.469 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 5.213 ; 3.000 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: MINIMIZATION OF MAXIMUM LIKELIHOOD REMARK 3 RESIDUAL BY CONJUGATE DIRECTION METHOD REMARK 4 REMARK 4 1I31 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-FEB-01. REMARK 100 THE DEPOSITION ID IS D_1000012840. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUN-00 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-BM-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.006 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : BENT CYLINDRICAL SI-MIRROR (RH REMARK 200 COATING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21919 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 200 DATA REDUNDANCY : 50.80 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 25.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.52 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.56 REMARK 200 COMPLETENESS FOR SHELL (%) : 76.2 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 0.59900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1BW8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 73.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM FORMATE, SODIUM ACETATE, PH REMARK 280 4.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 24.87800 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 49.75600 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 24.87800 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 49.75600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 11 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 122 REMARK 465 ASN A 123 REMARK 465 SER A 124 REMARK 465 GLU A 125 REMARK 465 THR A 126 REMARK 465 GLY A 127 REMARK 465 ALA A 128 REMARK 465 LEU A 129 REMARK 465 LYS A 130 REMARK 465 THR A 131 REMARK 465 PHE A 132 REMARK 465 ILE A 133 REMARK 465 THR A 134 REMARK 465 GLN A 135 REMARK 465 GLN A 136 REMARK 465 GLY A 137 REMARK 465 ILE A 138 REMARK 465 LYS A 139 REMARK 465 SER A 140 REMARK 465 GLN A 141 REMARK 465 HIS A 142 REMARK 465 GLN A 143 REMARK 465 THR A 144 REMARK 465 LYS A 145 REMARK 465 GLU A 146 REMARK 465 GLU A 147 REMARK 465 GLN A 148 REMARK 465 SER A 149 REMARK 465 GLN A 150 REMARK 465 ILE A 151 REMARK 465 THR A 152 REMARK 465 SER A 153 REMARK 465 GLN A 154 REMARK 465 VAL A 155 REMARK 465 THR A 156 REMARK 465 GLY A 157 REMARK 465 GLN A 158 REMARK 465 VAL A 221 REMARK 465 ILE A 222 REMARK 465 GLU A 223 REMARK 465 LYS A 224 REMARK 465 GLN A 225 REMARK 465 GLY A 226 REMARK 465 LYS A 227 REMARK 465 GLY A 228 REMARK 465 THR A 229 REMARK 465 ALA A 230 REMARK 465 ASP A 231 REMARK 465 GLU A 232 REMARK 465 THR A 233 REMARK 465 SER A 234 REMARK 465 LYS A 235 REMARK 465 SER A 236 REMARK 465 GLY A 237 REMARK 465 LYS A 256 REMARK 465 PHE A 257 REMARK 465 ASP A 258 REMARK 465 SER A 259 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1 O HOH A 1 4665 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 162 CD - NE - CZ ANGL. DEV. = 13.3 DEGREES REMARK 500 ARG A 162 NE - CZ - NH1 ANGL. DEV. = 4.7 DEGREES REMARK 500 ARG A 163 NE - CZ - NH1 ANGL. DEV. = -3.9 DEGREES REMARK 500 GLU A 164 OE1 - CD - OE2 ANGL. DEV. = -8.4 DEGREES REMARK 500 GLU A 164 CG - CD - OE2 ANGL. DEV. = 14.0 DEGREES REMARK 500 GLY A 165 C - N - CA ANGL. DEV. = -13.2 DEGREES REMARK 500 ASP A 176 CB - CG - OD2 ANGL. DEV. = 7.9 DEGREES REMARK 500 SER A 180 CB - CA - C ANGL. DEV. = 11.8 DEGREES REMARK 500 SER A 180 N - CA - CB ANGL. DEV. = -10.0 DEGREES REMARK 500 LEU A 184 CB - CA - C ANGL. DEV. = -12.0 DEGREES REMARK 500 ARG A 199 CD - NE - CZ ANGL. DEV. = 20.2 DEGREES REMARK 500 ARG A 199 NE - CZ - NH1 ANGL. DEV. = 7.7 DEGREES REMARK 500 ARG A 199 NE - CZ - NH2 ANGL. DEV. = -5.8 DEGREES REMARK 500 MET A 209 CG - SD - CE ANGL. DEV. = 10.1 DEGREES REMARK 500 GLU A 211 OE1 - CD - OE2 ANGL. DEV. = 12.7 DEGREES REMARK 500 ASP A 218 CB - CG - OD2 ANGL. DEV. = 10.1 DEGREES REMARK 500 LYS A 219 N - CA - CB ANGL. DEV. = 11.8 DEGREES REMARK 500 LYS A 219 CA - C - O ANGL. DEV. = 24.2 DEGREES REMARK 500 LYS A 219 CA - C - N ANGL. DEV. = -17.9 DEGREES REMARK 500 ILE A 220 C - N - CA ANGL. DEV. = 29.5 DEGREES REMARK 500 ASP A 244 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 ARG A 253 CD - NE - CZ ANGL. DEV. = 9.4 DEGREES REMARK 500 ARG A 253 NH1 - CZ - NH2 ANGL. DEV. = -8.7 DEGREES REMARK 500 ARG A 253 NE - CZ - NH1 ANGL. DEV. = 10.2 DEGREES REMARK 500 SER A 255 N - CA - CB ANGL. DEV. = -9.1 DEGREES REMARK 500 ARG A 261 CD - NE - CZ ANGL. DEV. = 9.3 DEGREES REMARK 500 ASP A 269 CB - CG - OD1 ANGL. DEV. = 7.2 DEGREES REMARK 500 ASP A 269 CB - CG - OD2 ANGL. DEV. = -7.7 DEGREES REMARK 500 ARG A 276 N - CA - CB ANGL. DEV. = -10.8 DEGREES REMARK 500 THR A 279 CA - CB - CG2 ANGL. DEV. = 13.0 DEGREES REMARK 500 LYS A 281 CD - CE - NZ ANGL. DEV. = 15.6 DEGREES REMARK 500 ARG A 288 NE - CZ - NH1 ANGL. DEV. = -5.8 DEGREES REMARK 500 ARG A 288 NE - CZ - NH2 ANGL. DEV. = 4.7 DEGREES REMARK 500 ARG A 298 O - C - N ANGL. DEV. = 10.8 DEGREES REMARK 500 THR A 299 N - CA - CB ANGL. DEV. = -15.8 DEGREES REMARK 500 THR A 299 CA - CB - CG2 ANGL. DEV. = 12.8 DEGREES REMARK 500 ALA A 317 CB - CA - C ANGL. DEV. = -9.9 DEGREES REMARK 500 GLU A 321 OE1 - CD - OE2 ANGL. DEV. = 11.1 DEGREES REMARK 500 ARG A 323 N - CA - CB ANGL. DEV. = -11.1 DEGREES REMARK 500 ARG A 323 CD - NE - CZ ANGL. DEV. = -14.5 DEGREES REMARK 500 ARG A 323 NH1 - CZ - NH2 ANGL. DEV. = 9.3 DEGREES REMARK 500 ARG A 323 NE - CZ - NH2 ANGL. DEV. = -10.4 DEGREES REMARK 500 GLN A 334 CA - CB - CG ANGL. DEV. = 16.9 DEGREES REMARK 500 LYS A 339 CA - CB - CG ANGL. DEV. = 13.5 DEGREES REMARK 500 TYR A 344 CB - CG - CD2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG A 357 NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES REMARK 500 MET A 358 CG - SD - CE ANGL. DEV. = -10.8 DEGREES REMARK 500 ASP A 377 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ARG A 383 NE - CZ - NH2 ANGL. DEV. = -6.7 DEGREES REMARK 500 ARG A 402 NE - CZ - NH2 ANGL. DEV. = -7.4 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 67 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 218 -150.67 -76.07 REMARK 500 LYS A 219 80.84 43.93 REMARK 500 LEU A 254 -78.82 -21.22 REMARK 500 ASN A 310 78.67 -102.10 REMARK 500 LYS A 312 151.86 -41.60 REMARK 500 PRO A 393 47.31 -86.43 REMARK 500 ASN A 412 32.34 -92.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 VAL A 177 11.28 REMARK 500 SER A 207 -12.31 REMARK 500 LEU A 285 -19.06 REMARK 500 GLU A 295 10.82 REMARK 500 LYS A 312 -16.85 REMARK 500 LYS A 356 12.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1BW8 RELATED DB: PDB REMARK 900 MU2 ADAPTIN SUBUNIT (AP50) OF AP2 ADAPTOR (SECOND DOMAIN), REMARK 900 COMPLEXED WITH EGFR INTERNALIZATION PEPTIDE FYRALM REMARK 900 RELATED ID: 1BXX RELATED DB: PDB REMARK 900 MU2 ADAPTIN SUBUNIT (AP50) OF AP2 ADAPTOR (SECOND DOMAIN), REMARK 900 COMPLEXED WITH TGN38 INTERNALIZATION PEPTIDE DYQRLN DBREF 1I31 A 122 435 UNP P84092 AP2M1_RAT 122 435 DBREF 1I31 P 1 6 GB 6478868 AAF14008 998 1003 SEQRES 1 A 314 GLN ASN SER GLU THR GLY ALA LEU LYS THR PHE ILE THR SEQRES 2 A 314 GLN GLN GLY ILE LYS SER GLN HIS GLN THR LYS GLU GLU SEQRES 3 A 314 GLN SER GLN ILE THR SER GLN VAL THR GLY GLN ILE GLY SEQRES 4 A 314 TRP ARG ARG GLU GLY ILE LYS TYR ARG ARG ASN GLU LEU SEQRES 5 A 314 PHE LEU ASP VAL LEU GLU SER VAL ASN LEU LEU MET SER SEQRES 6 A 314 PRO GLN GLY GLN VAL LEU SER ALA HIS VAL SER GLY ARG SEQRES 7 A 314 VAL VAL MET LYS SER TYR LEU SER GLY MET PRO GLU CYS SEQRES 8 A 314 LYS PHE GLY MET ASN ASP LYS ILE VAL ILE GLU LYS GLN SEQRES 9 A 314 GLY LYS GLY THR ALA ASP GLU THR SER LYS SER GLY LYS SEQRES 10 A 314 GLN SER ILE ALA ILE ASP ASP CYS THR PHE HIS GLN CYS SEQRES 11 A 314 VAL ARG LEU SER LYS PHE ASP SER GLU ARG SER ILE SER SEQRES 12 A 314 PHE ILE PRO PRO ASP GLY GLU PHE GLU LEU MET ARG TYR SEQRES 13 A 314 ARG THR THR LYS ASP ILE ILE LEU PRO PHE ARG VAL ILE SEQRES 14 A 314 PRO LEU VAL ARG GLU VAL GLY ARG THR LYS LEU GLU VAL SEQRES 15 A 314 LYS VAL VAL ILE LYS SER ASN PHE LYS PRO SER LEU LEU SEQRES 16 A 314 ALA GLN LYS ILE GLU VAL ARG ILE PRO THR PRO LEU ASN SEQRES 17 A 314 THR SER GLY VAL GLN VAL ILE CYS MET LYS GLY LYS ALA SEQRES 18 A 314 LYS TYR LYS ALA SER GLU ASN ALA ILE VAL TRP LYS ILE SEQRES 19 A 314 LYS ARG MET ALA GLY MET LYS GLU SER GLN ILE SER ALA SEQRES 20 A 314 GLU ILE GLU LEU LEU PRO THR ASN ASP LYS LYS LYS TRP SEQRES 21 A 314 ALA ARG PRO PRO ILE SER MET ASN PHE GLU VAL PRO PHE SEQRES 22 A 314 ALA PRO SER GLY LEU LYS VAL ARG TYR LEU LYS VAL PHE SEQRES 23 A 314 GLU PRO LYS LEU ASN TYR SER ASP HIS ASP VAL ILE LYS SEQRES 24 A 314 TRP VAL ARG TYR ILE GLY ARG SER GLY ILE TYR GLU THR SEQRES 25 A 314 ARG CYS SEQRES 1 P 6 PHE TYR ARG ALA LEU MET FORMUL 3 HOH *47(H2 O) HELIX 1 1 ALA A 346 GLU A 348 5 3 HELIX 2 2 SER A 414 VAL A 418 5 5 SHEET 1 A 9 ASP A 245 PHE A 248 0 SHEET 2 A 9 GLY A 270 THR A 279 -1 N ARG A 276 O THR A 247 SHEET 3 A 9 VAL A 191 TYR A 205 -1 N VAL A 196 O THR A 279 SHEET 4 A 9 GLU A 172 MET A 185 -1 O GLU A 172 N TYR A 205 SHEET 5 A 9 ILE A 419 THR A 433 1 O ILE A 419 N LEU A 173 SHEET 6 A 9 ILE A 386 VAL A 392 -1 N ILE A 386 O THR A 433 SHEET 7 A 9 LEU A 316 PRO A 325 -1 N GLN A 318 O GLU A 391 SHEET 8 A 9 ALA A 350 ALA A 359 -1 N ILE A 351 O ILE A 324 SHEET 9 A 9 LYS A 341 LYS A 345 -1 O LYS A 341 N LYS A 354 SHEET 1 B 6 ASP A 245 PHE A 248 0 SHEET 2 B 6 GLY A 270 THR A 279 -1 N ARG A 276 O THR A 247 SHEET 3 B 6 VAL A 191 TYR A 205 -1 N VAL A 196 O THR A 279 SHEET 4 B 6 GLU A 172 MET A 185 -1 O GLU A 172 N TYR A 205 SHEET 5 B 6 ILE A 419 THR A 433 1 O ILE A 419 N LEU A 173 SHEET 6 B 6 ARG P 3 ALA P 4 -1 N ARG P 3 O VAL A 422 SHEET 1 C 3 ILE A 263 PHE A 265 0 SHEET 2 C 3 GLU A 211 MET A 216 -1 N CYS A 212 O PHE A 265 SHEET 3 C 3 VAL A 401 PHE A 407 -1 N ARG A 402 O GLY A 215 SHEET 1 D 4 PHE A 287 VAL A 296 0 SHEET 2 D 4 LYS A 300 SER A 309 -1 N LYS A 300 O VAL A 296 SHEET 3 D 4 GLU A 363 LEU A 372 -1 N SER A 364 O ILE A 307 SHEET 4 D 4 THR A 330 ILE A 336 -1 N SER A 331 O GLU A 371 CRYST1 125.727 125.727 74.634 90.00 90.00 120.00 P 64 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007954 0.004592 0.000000 0.00000 SCALE2 0.000000 0.009184 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013399 0.00000