HEADER APOPTOSIS 15-FEB-01 1I3P TITLE THE 3.1 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF A MUTATED BACULOVIRUS TITLE 2 P35 AFTER CASPASE CLEAVAGE COMPND MOL_ID: 1; COMPND 2 MOLECULE: EARLY 35 KDA PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: APOPTOSIS PREVENTING PROTEIN; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AUTOGRAPHA CALIFORNICA NUCLEOPOLYHEDROVIRUS; SOURCE 3 ORGANISM_TAXID: 46015; SOURCE 4 GENE: P35; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET22B+ KEYWDS HELIX-TURN-HELIX, REACTIVE SITE LOOP, HAIRPIN LOOP, APOPTOSIS EXPDTA X-RAY DIFFRACTION AUTHOR W.P.DELA CRUZ,D.LEMONGELLO,P.D.FRIESEN,A.J.FISHER REVDAT 6 09-AUG-23 1I3P 1 REMARK REVDAT 5 27-OCT-21 1I3P 1 SEQADV SHEET REVDAT 4 31-JAN-18 1I3P 1 REMARK REVDAT 3 04-OCT-17 1I3P 1 REMARK REVDAT 2 24-FEB-09 1I3P 1 VERSN REVDAT 1 24-OCT-01 1I3P 0 JRNL AUTH W.P.DELA CRUZ,P.D.FRIESEN,A.J.FISHER JRNL TITL CRYSTAL STRUCTURE OF BACULOVIRUS P35 REVEALS A NOVEL JRNL TITL 2 CONFORMATIONAL CHANGE IN THE REACTIVE SITE LOOP AFTER JRNL TITL 3 CASPASE CLEAVAGE. JRNL REF J.BIOL.CHEM. V. 276 32933 2001 JRNL REFN ISSN 0021-9258 JRNL PMID 11402050 JRNL DOI 10.1074/JBC.M103930200 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.J.FISHER,W.P.DELA CRUZ,S.J.ZOOG,C.L.SCHNEIDER,P.D.FRIESEN REMARK 1 TITL CRYSTAL STRUCTURE OF BACULOVIRUS P35: ROLE OF A NOVEL REMARK 1 TITL 2 REACTIVE SITE LOOP IN APOPTOTIC INHIBITION REMARK 1 REF EMBO J. V. 18 2031 1999 REMARK 1 REFN ISSN 0261-4189 REMARK 1 DOI 10.1093/EMBOJ/18.8.2031 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 14.95 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 934677.250 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 7530 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.239 REMARK 3 FREE R VALUE : 0.291 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600 REMARK 3 FREE R VALUE TEST SET COUNT : 346 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.016 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.29 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1191 REMARK 3 BIN R VALUE (WORKING SET) : 0.3140 REMARK 3 BIN FREE R VALUE : 0.3840 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 62 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.049 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2077 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 69.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 75.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.42 REMARK 3 ESD FROM SIGMAA (A) : 0.20 REMARK 3 LOW RESOLUTION CUTOFF (A) : 15.0 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.55 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.36 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.019 REMARK 3 BOND ANGLES (DEGREES) : 2.100 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 26.40 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.480 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : GROUP REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.24 REMARK 3 BSOL : 49.08 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1I3P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-FEB-01. REMARK 100 THE DEPOSITION ID IS D_1000012864. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-DEC-99 REMARK 200 TEMPERATURE (KELVIN) : 170 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NI MIRROR + NI FILTER REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : R-AXIS REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7577 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 15.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 10.63 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 470.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.39500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1P35 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 9-13% PEG 20,000, 100-400 MM NACL, 100 REMARK 280 MM MES, PH 6.0, VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 80.46200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 40.23100 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 40.23100 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 80.46200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A MONOMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 CYS A 2 REMARK 465 VAL A 3 REMARK 465 ILE A 4 REMARK 465 PHE A 5 REMARK 465 SER A 83 REMARK 465 ASP A 84 REMARK 465 GLN A 85 REMARK 465 MET A 86 REMARK 465 ASP A 87 REMARK 465 GLY A 88 REMARK 465 PHE A 89 REMARK 465 HIS A 90 REMARK 465 SER A 236 REMARK 465 LYS A 237 REMARK 465 ASN A 238 REMARK 465 GLU A 251 REMARK 465 SER A 252 REMARK 465 SER A 253 REMARK 465 TRP A 254 REMARK 465 GLY A 255 REMARK 465 LYS A 256 REMARK 465 SER A 257 REMARK 465 GLU A 258 REMARK 465 LYS A 299 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PRO A 6 CG CD REMARK 470 VAL A 7 CG1 CG2 REMARK 470 GLU A 8 CG CD OE1 OE2 REMARK 470 ILE A 9 CG1 CG2 CD1 REMARK 470 ASP A 10 CG OD1 OD2 REMARK 470 LYS A 23 CG CD CE NZ REMARK 470 LYS A 33 CG CD CE NZ REMARK 470 ASN A 36 CG OD1 ND2 REMARK 470 THR A 37 OG1 CG2 REMARK 470 GLN A 38 CG CD OE1 NE2 REMARK 470 LEU A 39 CG CD1 CD2 REMARK 470 LYS A 41 CG CD CE NZ REMARK 470 ARG A 64 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 66 CG CD NE CZ NH1 NH2 REMARK 470 SER A 69 OG REMARK 470 LYS A 70 CG CD CE NZ REMARK 470 GLU A 73 CG CD OE1 OE2 REMARK 470 ASP A 91 CG OD1 OD2 REMARK 470 LYS A 97 CG CD CE NZ REMARK 470 ASP A 98 CG OD1 OD2 REMARK 470 GLU A 99 CG CD OE1 OE2 REMARK 470 HIS A 100 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 112 CG CD CE NZ REMARK 470 LYS A 117 CG CD CE NZ REMARK 470 LYS A 120 CG CD CE NZ REMARK 470 ASP A 123 CG OD1 OD2 REMARK 470 THR A 125 OG1 CG2 REMARK 470 ASP A 126 CG OD1 OD2 REMARK 470 LYS A 127 CG CD CE NZ REMARK 470 LYS A 128 CG CD CE NZ REMARK 470 SER A 129 OG REMARK 470 GLU A 131 CG CD OE1 OE2 REMARK 470 LYS A 135 CG CD CE NZ REMARK 470 TYR A 136 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASP A 143 CG OD1 OD2 REMARK 470 GLU A 144 CG CD OE1 OE2 REMARK 470 ARG A 145 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 146 CG OD1 ND2 REMARK 470 GLU A 160 CG CD OE1 OE2 REMARK 470 ASN A 164 CG OD1 ND2 REMARK 470 LYS A 224 CG CD CE NZ REMARK 470 THR A 250 OG1 CG2 REMARK 470 LYS A 259 CG CD CE NZ REMARK 470 TYR A 260 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 273 CG CD CE NZ REMARK 470 LYS A 274 CG CD CE NZ REMARK 470 LYS A 276 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 232 OE2 GLU A 247 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 156 CE LYS A 156 NZ 0.164 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 THR A 40 N - CA - C ANGL. DEV. = -23.8 DEGREES REMARK 500 PRO A 71 C - N - CA ANGL. DEV. = -10.0 DEGREES REMARK 500 PRO A 157 C - N - CA ANGL. DEV. = 9.6 DEGREES REMARK 500 PRO A 181 C - N - CA ANGL. DEV. = 10.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 7 123.80 -37.56 REMARK 500 GLN A 13 -116.60 -93.36 REMARK 500 THR A 14 114.20 -162.57 REMARK 500 ASP A 22 -165.25 -106.59 REMARK 500 LYS A 33 -36.17 -31.08 REMARK 500 GLN A 38 -110.54 -87.14 REMARK 500 LYS A 41 -174.50 -37.19 REMARK 500 PRO A 42 134.47 -36.45 REMARK 500 THR A 57 -163.04 -75.39 REMARK 500 ARG A 58 70.88 -163.34 REMARK 500 LYS A 59 -176.24 -53.85 REMARK 500 ASN A 61 13.27 -53.49 REMARK 500 ARG A 64 -77.99 -54.13 REMARK 500 GLU A 79 -169.95 -64.21 REMARK 500 LYS A 80 72.53 -172.85 REMARK 500 PHE A 115 -43.95 -26.84 REMARK 500 TYR A 124 -75.01 -84.65 REMARK 500 ASP A 126 -124.54 -88.10 REMARK 500 LYS A 127 -76.27 -165.11 REMARK 500 GLU A 144 -72.94 -93.36 REMARK 500 ARG A 145 -49.05 -23.56 REMARK 500 PRO A 157 -71.34 -23.47 REMARK 500 PRO A 181 65.69 -56.37 REMARK 500 ALA A 183 128.98 -32.47 REMARK 500 SER A 202 36.66 70.58 REMARK 500 LEU A 219 176.18 -59.52 REMARK 500 ASN A 225 -48.85 -22.85 REMARK 500 LYS A 263 66.56 -155.64 REMARK 500 PHE A 265 24.70 39.35 REMARK 500 LYS A 274 -88.99 -76.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 95 0.08 SIDE CHAIN REMARK 500 TYR A 192 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1P35 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF P35 WILD TYPE DBREF 1I3P A 2 299 UNP P08160 VP35_NPVAC 2 299 SEQADV 1I3P PRO A 71 UNP P08160 VAL 71 ENGINEERED MUTATION SEQRES 1 A 298 CYS VAL ILE PHE PRO VAL GLU ILE ASP VAL SER GLN THR SEQRES 2 A 298 ILE ILE ARG ASP CYS GLN VAL ASP LYS GLN THR ARG GLU SEQRES 3 A 298 LEU VAL TYR ILE ASN LYS ILE MET ASN THR GLN LEU THR SEQRES 4 A 298 LYS PRO VAL LEU MET MET PHE ASN ILE SER GLY PRO ILE SEQRES 5 A 298 ARG SER VAL THR ARG LYS ASN ASN ASN LEU ARG ASP ARG SEQRES 6 A 298 ILE LYS SER LYS PRO ASP GLU GLN PHE ASP GLN LEU GLU SEQRES 7 A 298 LYS ASP TYR SER ASP GLN MET ASP GLY PHE HIS ASP SER SEQRES 8 A 298 ILE LYS TYR PHE LYS ASP GLU HIS TYR SER VAL SER CYS SEQRES 9 A 298 GLN ASN GLY SER VAL LEU LYS SER LYS PHE ALA LYS ILE SEQRES 10 A 298 LEU LYS SER HIS ASP TYR THR ASP LYS LYS SER ILE GLU SEQRES 11 A 298 ALA TYR GLU LYS TYR CYS LEU PRO LYS LEU VAL ASP GLU SEQRES 12 A 298 ARG ASN ASP TYR TYR VAL ALA VAL CYS VAL LEU LYS PRO SEQRES 13 A 298 GLY PHE GLU ASN GLY SER ASN GLN VAL LEU SER PHE GLU SEQRES 14 A 298 TYR ASN PRO ILE GLY ASN LYS VAL ILE VAL PRO PHE ALA SEQRES 15 A 298 HIS GLU ILE ASN ASP THR GLY LEU TYR GLU TYR ASP VAL SEQRES 16 A 298 VAL ALA TYR VAL ASP SER VAL GLN PHE ASP GLY GLU GLN SEQRES 17 A 298 PHE GLU GLU PHE VAL GLN SER LEU ILE LEU PRO SER SER SEQRES 18 A 298 PHE LYS ASN SER GLU LYS VAL LEU TYR TYR ASN GLU ALA SEQRES 19 A 298 SER LYS ASN LYS SER MET ILE TYR LYS ALA LEU GLU PHE SEQRES 20 A 298 THR THR GLU SER SER TRP GLY LYS SER GLU LYS TYR ASN SEQRES 21 A 298 TRP LYS ILE PHE CYS ASN GLY PHE ILE TYR ASP LYS LYS SEQRES 22 A 298 SER LYS VAL LEU TYR VAL LYS LEU HIS ASN VAL THR SER SEQRES 23 A 298 ALA LEU ASN LYS ASN VAL ILE LEU ASN THR ILE LYS HELIX 1 2 ASN A 62 GLN A 77 1 16 HELIX 2 3 GLY A 108 PHE A 115 1 8 HELIX 3 4 LYS A 114 HIS A 122 1 9 HELIX 4 6 LEU A 138 VAL A 142 5 5 HELIX 5 7 PRO A 157 ASN A 161 5 5 HELIX 6 8 ASP A 206 SER A 216 1 11 SHEET 1 A 9 ILE A 53 THR A 57 0 SHEET 2 A 9 LEU A 167 TYR A 171 -1 O SER A 168 N THR A 57 SHEET 3 A 9 ARG A 26 ASN A 32 -1 N ARG A 26 O TYR A 171 SHEET 4 A 9 THR A 14 GLN A 20 -1 O ILE A 15 N ILE A 31 SHEET 5 A 9 TYR A 192 ASP A 201 1 O VAL A 197 N ILE A 16 SHEET 6 A 9 VAL A 277 SER A 287 -1 O LEU A 278 N VAL A 200 SHEET 7 A 9 ASN A 261 TYR A 271 -1 O GLY A 268 N LYS A 281 SHEET 8 A 9 SER A 240 THR A 249 -1 O SER A 240 N TYR A 271 SHEET 9 A 9 LYS A 228 ASN A 233 -1 N LYS A 228 O GLU A 247 SHEET 1 B 3 MET A 45 ILE A 49 0 SHEET 2 B 3 TYR A 149 LEU A 155 -1 O TYR A 149 N ILE A 49 SHEET 3 B 3 TYR A 101 ASN A 107 -1 O SER A 102 N VAL A 154 SHEET 1 C 2 LYS A 177 VAL A 180 0 SHEET 2 C 2 VAL A 293 ASN A 296 -1 O VAL A 293 N VAL A 180 CRYST1 75.806 75.806 120.693 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013192 0.007616 0.000000 0.00000 SCALE2 0.000000 0.015232 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008285 0.00000