HEADER APOPTOSIS 15-FEB-01 1I3S TITLE THE 2.7 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF A MUTATED BACULOVIRUS TITLE 2 P35 AFTER CASPASE CLEAVAGE COMPND MOL_ID: 1; COMPND 2 MOLECULE: EARLY 35 KDA PROTEIN; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: APOPTOSIS PREVENTING PROTEIN; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AUTOGRAPHA CALIFORNICA NUCLEOPOLYHEDROVIRUS; SOURCE 3 ORGANISM_TAXID: 46015; SOURCE 4 GENE: P35; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET22B+ KEYWDS HAIRPIN LOOP, HELIX-TURN-HELIX, REACTIVE SITE LOOP, APOPTOSIS EXPDTA X-RAY DIFFRACTION AUTHOR W.P.DELA CRUZ,D.LEMONGELLO,P.D.FRIESEN,A.J.FISHER REVDAT 6 30-OCT-24 1I3S 1 REMARK REVDAT 5 09-AUG-23 1I3S 1 REMARK REVDAT 4 27-OCT-21 1I3S 1 REMARK SEQADV LINK REVDAT 3 04-OCT-17 1I3S 1 REMARK REVDAT 2 24-FEB-09 1I3S 1 VERSN REVDAT 1 24-OCT-01 1I3S 0 JRNL AUTH W.P.DELA CRUZ,P.D.FRIESEN,A.J.FISHER JRNL TITL CRYSTAL STRUCTURE OF BACULOVIRUS P35 REVEALS A NOVEL JRNL TITL 2 CONFORMATIONAL CHANGE IN THE REACTIVE SITE LOOP AFTER JRNL TITL 3 CASPASE CLEAVAGE. JRNL REF J.BIOL.CHEM. V. 276 32933 2001 JRNL REFN ISSN 0021-9258 JRNL PMID 11402050 JRNL DOI 10.1074/JBC.M103930200 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.J.FISHER,W.P.DELA CRUZ,S.J.ZOOG,C.L.SCHNEIDER,P.D.FRIESEN REMARK 1 TITL CRYSTAL STRUCTURE OF BACULOVIRUS P35: ROLE OF A NOVEL REMARK 1 TITL 2 REACTIVE SITE LOOP IN APOPTOTIC INHIBITION REMARK 1 REF EMBO J. V. 18 2031 1999 REMARK 1 REFN ISSN 0261-4189 REMARK 1 DOI 10.1093/EMBOJ/18.8.2031 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.49 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1079019.620 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 94.8 REMARK 3 NUMBER OF REFLECTIONS : 25271 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1222 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.10 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3939 REMARK 3 BIN R VALUE (WORKING SET) : 0.2380 REMARK 3 BIN FREE R VALUE : 0.3060 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 203 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.021 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6703 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 54 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -12.67000 REMARK 3 B22 (A**2) : 10.22000 REMARK 3 B33 (A**2) : 2.45000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.30 REMARK 3 ESD FROM SIGMAA (A) : 0.28 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.40 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.35 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.013 REMARK 3 BOND ANGLES (DEGREES) : 1.700 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 26.10 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.950 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : OVERALL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.32 REMARK 3 BSOL : 35.49 REMARK 3 REMARK 3 NCS MODEL : CONSTR REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 PARAMETER FILE 2 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1I3S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-FEB-01. REMARK 100 THE DEPOSITION ID IS D_1000012867. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-APR-00 REMARK 200 TEMPERATURE (KELVIN) : 170 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL7-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.08 REMARK 200 MONOCHROMATOR : NI MIRROR + NI FILTER REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MAR REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25271 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 200 DATA REDUNDANCY : 7.260 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 450.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.46 REMARK 200 R MERGE FOR SHELL (I) : 0.33400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1I3P REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 9-13% PEG 20,000, 100-400 MM NACL, 100 REMARK 280 MM MES, PH 6.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 38.80400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.04950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.65150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 68.04950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.80400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.65150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A MONOMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 CYS A 2 REMARK 465 VAL A 3 REMARK 465 ILE A 4 REMARK 465 PHE A 5 REMARK 465 PRO A 6 REMARK 465 VAL A 7 REMARK 465 GLU A 8 REMARK 465 ILE A 9 REMARK 465 ASP A 10 REMARK 465 VAL A 11 REMARK 465 GLY A 88 REMARK 465 PHE A 89 REMARK 465 HIS A 90 REMARK 465 ASP A 91 REMARK 465 LYS A 299 REMARK 465 CYS B 2 REMARK 465 VAL B 3 REMARK 465 ILE B 4 REMARK 465 PHE B 5 REMARK 465 PRO B 6 REMARK 465 VAL B 7 REMARK 465 GLU B 8 REMARK 465 ILE B 9 REMARK 465 ASP B 10 REMARK 465 VAL B 11 REMARK 465 GLN B 85 REMARK 465 MET B 86 REMARK 465 ASP B 87 REMARK 465 GLY B 88 REMARK 465 PHE B 89 REMARK 465 HIS B 90 REMARK 465 ASP B 91 REMARK 465 CYS C 2 REMARK 465 VAL C 3 REMARK 465 ILE C 4 REMARK 465 PHE C 5 REMARK 465 PRO C 6 REMARK 465 VAL C 7 REMARK 465 GLU C 8 REMARK 465 ILE C 9 REMARK 465 ASP C 10 REMARK 465 VAL C 11 REMARK 465 MET C 86 REMARK 465 ASP C 87 REMARK 465 GLY C 88 REMARK 465 PHE C 89 REMARK 465 HIS C 90 REMARK 465 ASP C 91 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 33 CG CD CE NZ REMARK 470 MET A 86 CG SD CE REMARK 470 ASP A 87 CG OD1 OD2 REMARK 470 GLU A 99 CG CD OE1 OE2 REMARK 470 SER A 113 OG REMARK 470 LYS A 114 CG CD CE NZ REMARK 470 LYS A 117 CG CD CE NZ REMARK 470 LYS A 120 CG CD CE NZ REMARK 470 ASP A 123 CG OD1 OD2 REMARK 470 LYS A 127 CG CD CE NZ REMARK 470 LYS A 128 CG CD CE NZ REMARK 470 GLU A 131 CG CD OE1 OE2 REMARK 470 GLU A 144 CG CD OE1 OE2 REMARK 470 ARG A 145 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 185 CG CD OE1 OE2 REMARK 470 ASP A 188 CG OD1 OD2 REMARK 470 LYS A 237 CG CD CE NZ REMARK 470 ASN A 238 CG OD1 ND2 REMARK 470 GLU A 251 CG CD OE1 OE2 REMARK 470 SER A 252 OG REMARK 470 SER A 253 OG REMARK 470 LYS A 256 CG CD CE NZ REMARK 470 SER A 257 OG REMARK 470 GLU A 258 CG CD OE1 OE2 REMARK 470 LYS A 274 CG CD CE NZ REMARK 470 LYS B 23 CG CD CE NZ REMARK 470 LYS B 33 CG CD CE NZ REMARK 470 ASN B 36 CG OD1 ND2 REMARK 470 THR B 37 OG1 CG2 REMARK 470 MET B 38 CG SD CE REMARK 470 ASP B 84 CG OD1 OD2 REMARK 470 LYS B 112 CG CD CE NZ REMARK 470 LYS B 117 CG CD CE NZ REMARK 470 THR B 125 OG1 CG2 REMARK 470 LYS B 127 CG CD CE NZ REMARK 470 LYS B 128 CG CD CE NZ REMARK 470 GLU B 144 CG CD OE1 OE2 REMARK 470 ARG B 145 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 146 CG OD1 ND2 REMARK 470 SER B 236 OG REMARK 470 LYS B 237 CG CD CE NZ REMARK 470 GLU B 251 CG CD OE1 OE2 REMARK 470 SER B 252 OG REMARK 470 SER B 253 OG REMARK 470 TRP B 254 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 254 CZ3 CH2 REMARK 470 LYS B 256 CG CD CE NZ REMARK 470 SER B 257 OG REMARK 470 GLU B 258 CG CD OE1 OE2 REMARK 470 LYS B 274 CG CD CE NZ REMARK 470 LYS B 299 CG CD CE NZ REMARK 470 LYS C 23 CG CD CE NZ REMARK 470 LYS C 33 CG CD CE NZ REMARK 470 ASN C 36 CG OD1 ND2 REMARK 470 ASP C 98 CG OD1 OD2 REMARK 470 GLU C 99 CG CD OE1 OE2 REMARK 470 LYS C 112 CG CD CE NZ REMARK 470 LYS C 120 CG CD CE NZ REMARK 470 ASP C 123 CG OD1 OD2 REMARK 470 LYS C 127 CG CD CE NZ REMARK 470 LYS C 128 CG CD CE NZ REMARK 470 GLU C 131 CG CD OE1 OE2 REMARK 470 ASP C 143 CG OD1 OD2 REMARK 470 GLU C 144 CG CD OE1 OE2 REMARK 470 ARG C 145 CG CD NE CZ NH1 NH2 REMARK 470 SER C 236 OG REMARK 470 LYS C 237 CG CD CE NZ REMARK 470 GLU C 258 CG CD OE1 OE2 REMARK 470 LYS C 274 CG CD CE NZ REMARK 470 LYS C 299 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS B 137 CA - CB - SG ANGL. DEV. = 7.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 22 173.23 179.29 REMARK 500 MET A 35 -27.87 -23.83 REMARK 500 ASN A 36 53.27 -116.72 REMARK 500 TYR A 82 36.47 -83.54 REMARK 500 ASP A 84 14.03 57.39 REMARK 500 MET A 86 70.54 -104.54 REMARK 500 LYS A 114 34.82 -145.15 REMARK 500 ASP A 123 40.47 72.31 REMARK 500 ASP A 126 106.91 -37.11 REMARK 500 ARG A 145 -61.67 -29.26 REMARK 500 ASP A 147 59.65 -93.84 REMARK 500 TYR A 148 150.30 -46.88 REMARK 500 PRO A 181 70.61 -65.38 REMARK 500 ASP A 195 83.20 -163.61 REMARK 500 ASN A 225 -18.67 -44.66 REMARK 500 SER A 236 -166.56 -109.52 REMARK 500 SER A 257 82.02 -29.03 REMARK 500 ASP B 22 -175.02 -172.34 REMARK 500 MET B 35 -31.89 -27.74 REMARK 500 TYR B 82 42.17 -100.85 REMARK 500 SER B 83 63.83 -69.27 REMARK 500 ARG B 145 -58.08 -27.91 REMARK 500 GLN B 165 54.06 -90.98 REMARK 500 PRO B 181 76.62 -66.95 REMARK 500 ASP B 195 79.58 -158.95 REMARK 500 SER B 236 -152.67 -94.56 REMARK 500 SER B 253 -87.68 -40.15 REMARK 500 TRP B 254 -15.42 -49.23 REMARK 500 LYS B 256 -35.90 70.81 REMARK 500 SER B 257 104.70 76.00 REMARK 500 ASP C 22 176.28 179.32 REMARK 500 MET C 35 -23.13 -39.11 REMARK 500 ASN C 36 44.56 -105.04 REMARK 500 LEU C 39 128.33 -23.94 REMARK 500 ASP C 84 -3.25 -58.82 REMARK 500 LYS C 114 35.43 -141.89 REMARK 500 CYS C 137 -66.92 -103.93 REMARK 500 LEU C 138 -38.42 -35.67 REMARK 500 ASP C 147 59.54 -90.96 REMARK 500 TYR C 148 155.56 -47.76 REMARK 500 ASN C 164 54.95 -116.09 REMARK 500 GLN C 165 51.01 -101.29 REMARK 500 PRO C 181 77.18 -60.95 REMARK 500 ASP C 195 80.19 -160.02 REMARK 500 SER C 236 -159.71 -89.08 REMARK 500 TRP C 254 -31.30 -138.92 REMARK 500 LYS C 256 61.68 11.49 REMARK 500 SER C 257 84.70 83.27 REMARK 500 ILE C 298 -158.81 -128.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DTT A 1137 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DTT B 2137 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DTT C 3137 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1P35 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BACULOVIRUS P35 REMARK 900 RELATED ID: 1I3P RELATED DB: PDB REMARK 900 3.1 ANGSTROM RESOLUTION STRUCTURE OF A MUTATED BACULOVIRUS P35 REMARK 900 AFTER CASPASE CLEAVAGE DBREF 1I3S A 2 299 UNP P08160 VP35_NPVAC 2 299 DBREF 1I3S B 2 299 UNP P08160 VP35_NPVAC 2 299 DBREF 1I3S C 2 299 UNP P08160 VP35_NPVAC 2 299 SEQADV 1I3S MET A 38 UNP P08160 GLN 38 CONFLICT SEQADV 1I3S PRO A 71 UNP P08160 VAL 71 ENGINEERED MUTATION SEQADV 1I3S MET B 38 UNP P08160 GLN 38 CONFLICT SEQADV 1I3S PRO B 71 UNP P08160 VAL 71 ENGINEERED MUTATION SEQADV 1I3S MET C 38 UNP P08160 GLN 38 CONFLICT SEQADV 1I3S PRO C 71 UNP P08160 VAL 71 ENGINEERED MUTATION SEQRES 1 A 298 CYS VAL ILE PHE PRO VAL GLU ILE ASP VAL SER GLN THR SEQRES 2 A 298 ILE ILE ARG ASP CYS GLN VAL ASP LYS GLN THR ARG GLU SEQRES 3 A 298 LEU VAL TYR ILE ASN LYS ILE MET ASN THR MET LEU THR SEQRES 4 A 298 LYS PRO VAL LEU MET MET PHE ASN ILE SER GLY PRO ILE SEQRES 5 A 298 ARG SER VAL THR ARG LYS ASN ASN ASN LEU ARG ASP ARG SEQRES 6 A 298 ILE LYS SER LYS PRO ASP GLU GLN PHE ASP GLN LEU GLU SEQRES 7 A 298 ARG ASP TYR SER ASP GLN MET ASP GLY PHE HIS ASP SER SEQRES 8 A 298 ILE LYS TYR PHE LYS ASP GLU HIS TYR SER VAL SER CYS SEQRES 9 A 298 GLN ASN GLY SER VAL LEU LYS SER LYS PHE ALA LYS ILE SEQRES 10 A 298 LEU LYS SER HIS ASP TYR THR ASP LYS LYS SER ILE GLU SEQRES 11 A 298 ALA TYR GLU LYS TYR CYS LEU PRO LYS LEU VAL ASP GLU SEQRES 12 A 298 ARG ASN ASP TYR TYR VAL ALA VAL CYS VAL LEU LYS PRO SEQRES 13 A 298 GLY PHE GLU ASN GLY SER ASN GLN VAL LEU SER PHE GLU SEQRES 14 A 298 TYR ASN PRO ILE GLY ASN LYS VAL ILE VAL PRO PHE ALA SEQRES 15 A 298 HIS GLU ILE ASN ASP THR GLY LEU TYR GLU TYR ASP VAL SEQRES 16 A 298 VAL ALA TYR VAL ASP SER VAL GLN PHE ASP GLY GLU GLN SEQRES 17 A 298 PHE GLU GLU PHE VAL GLN SER LEU ILE LEU PRO SER SER SEQRES 18 A 298 PHE LYS ASN SER GLU LYS VAL LEU TYR TYR ASN GLU ALA SEQRES 19 A 298 SER LYS ASN LYS SER MET ILE TYR LYS ALA LEU GLU PHE SEQRES 20 A 298 THR THR GLU SER SER TRP GLY LYS SER GLU LYS TYR ASN SEQRES 21 A 298 TRP LYS ILE PHE CYS ASN GLY PHE ILE TYR ASP LYS LYS SEQRES 22 A 298 SER LYS VAL LEU TYR VAL LYS LEU HIS ASN VAL THR SER SEQRES 23 A 298 ALA LEU ASN LYS ASN VAL ILE LEU ASN THR ILE LYS SEQRES 1 B 298 CYS VAL ILE PHE PRO VAL GLU ILE ASP VAL SER GLN THR SEQRES 2 B 298 ILE ILE ARG ASP CYS GLN VAL ASP LYS GLN THR ARG GLU SEQRES 3 B 298 LEU VAL TYR ILE ASN LYS ILE MET ASN THR MET LEU THR SEQRES 4 B 298 LYS PRO VAL LEU MET MET PHE ASN ILE SER GLY PRO ILE SEQRES 5 B 298 ARG SER VAL THR ARG LYS ASN ASN ASN LEU ARG ASP ARG SEQRES 6 B 298 ILE LYS SER LYS PRO ASP GLU GLN PHE ASP GLN LEU GLU SEQRES 7 B 298 ARG ASP TYR SER ASP GLN MET ASP GLY PHE HIS ASP SER SEQRES 8 B 298 ILE LYS TYR PHE LYS ASP GLU HIS TYR SER VAL SER CYS SEQRES 9 B 298 GLN ASN GLY SER VAL LEU LYS SER LYS PHE ALA LYS ILE SEQRES 10 B 298 LEU LYS SER HIS ASP TYR THR ASP LYS LYS SER ILE GLU SEQRES 11 B 298 ALA TYR GLU LYS TYR CYS LEU PRO LYS LEU VAL ASP GLU SEQRES 12 B 298 ARG ASN ASP TYR TYR VAL ALA VAL CYS VAL LEU LYS PRO SEQRES 13 B 298 GLY PHE GLU ASN GLY SER ASN GLN VAL LEU SER PHE GLU SEQRES 14 B 298 TYR ASN PRO ILE GLY ASN LYS VAL ILE VAL PRO PHE ALA SEQRES 15 B 298 HIS GLU ILE ASN ASP THR GLY LEU TYR GLU TYR ASP VAL SEQRES 16 B 298 VAL ALA TYR VAL ASP SER VAL GLN PHE ASP GLY GLU GLN SEQRES 17 B 298 PHE GLU GLU PHE VAL GLN SER LEU ILE LEU PRO SER SER SEQRES 18 B 298 PHE LYS ASN SER GLU LYS VAL LEU TYR TYR ASN GLU ALA SEQRES 19 B 298 SER LYS ASN LYS SER MET ILE TYR LYS ALA LEU GLU PHE SEQRES 20 B 298 THR THR GLU SER SER TRP GLY LYS SER GLU LYS TYR ASN SEQRES 21 B 298 TRP LYS ILE PHE CYS ASN GLY PHE ILE TYR ASP LYS LYS SEQRES 22 B 298 SER LYS VAL LEU TYR VAL LYS LEU HIS ASN VAL THR SER SEQRES 23 B 298 ALA LEU ASN LYS ASN VAL ILE LEU ASN THR ILE LYS SEQRES 1 C 298 CYS VAL ILE PHE PRO VAL GLU ILE ASP VAL SER GLN THR SEQRES 2 C 298 ILE ILE ARG ASP CYS GLN VAL ASP LYS GLN THR ARG GLU SEQRES 3 C 298 LEU VAL TYR ILE ASN LYS ILE MET ASN THR MET LEU THR SEQRES 4 C 298 LYS PRO VAL LEU MET MET PHE ASN ILE SER GLY PRO ILE SEQRES 5 C 298 ARG SER VAL THR ARG LYS ASN ASN ASN LEU ARG ASP ARG SEQRES 6 C 298 ILE LYS SER LYS PRO ASP GLU GLN PHE ASP GLN LEU GLU SEQRES 7 C 298 ARG ASP TYR SER ASP GLN MET ASP GLY PHE HIS ASP SER SEQRES 8 C 298 ILE LYS TYR PHE LYS ASP GLU HIS TYR SER VAL SER CYS SEQRES 9 C 298 GLN ASN GLY SER VAL LEU LYS SER LYS PHE ALA LYS ILE SEQRES 10 C 298 LEU LYS SER HIS ASP TYR THR ASP LYS LYS SER ILE GLU SEQRES 11 C 298 ALA TYR GLU LYS TYR CYS LEU PRO LYS LEU VAL ASP GLU SEQRES 12 C 298 ARG ASN ASP TYR TYR VAL ALA VAL CYS VAL LEU LYS PRO SEQRES 13 C 298 GLY PHE GLU ASN GLY SER ASN GLN VAL LEU SER PHE GLU SEQRES 14 C 298 TYR ASN PRO ILE GLY ASN LYS VAL ILE VAL PRO PHE ALA SEQRES 15 C 298 HIS GLU ILE ASN ASP THR GLY LEU TYR GLU TYR ASP VAL SEQRES 16 C 298 VAL ALA TYR VAL ASP SER VAL GLN PHE ASP GLY GLU GLN SEQRES 17 C 298 PHE GLU GLU PHE VAL GLN SER LEU ILE LEU PRO SER SER SEQRES 18 C 298 PHE LYS ASN SER GLU LYS VAL LEU TYR TYR ASN GLU ALA SEQRES 19 C 298 SER LYS ASN LYS SER MET ILE TYR LYS ALA LEU GLU PHE SEQRES 20 C 298 THR THR GLU SER SER TRP GLY LYS SER GLU LYS TYR ASN SEQRES 21 C 298 TRP LYS ILE PHE CYS ASN GLY PHE ILE TYR ASP LYS LYS SEQRES 22 C 298 SER LYS VAL LEU TYR VAL LYS LEU HIS ASN VAL THR SER SEQRES 23 C 298 ALA LEU ASN LYS ASN VAL ILE LEU ASN THR ILE LYS HET DTT A1137 8 HET DTT B2137 8 HET DTT C3137 8 HETNAM DTT 2,3-DIHYDROXY-1,4-DITHIOBUTANE HETSYN DTT 1,4-DITHIOTHREITOL FORMUL 4 DTT 3(C4 H10 O2 S2) FORMUL 7 HOH *54(H2 O) HELIX 1 1 LYS A 33 THR A 37 5 5 HELIX 2 2 ASN A 61 GLN A 77 1 17 HELIX 3 3 GLY A 108 LYS A 114 1 7 HELIX 4 4 LYS A 114 HIS A 122 1 9 HELIX 5 5 ASP A 126 CYS A 137 1 12 HELIX 6 6 CYS A 137 VAL A 142 1 6 HELIX 7 7 ASP A 206 LEU A 217 1 12 HELIX 8 8 ASN B 32 THR B 37 1 6 HELIX 9 9 ASN B 61 GLN B 77 1 17 HELIX 10 10 GLY B 108 LYS B 114 1 7 HELIX 11 11 LYS B 114 HIS B 122 1 9 HELIX 12 12 ASP B 126 CYS B 137 1 12 HELIX 13 13 CYS B 137 VAL B 142 1 6 HELIX 14 14 ASP B 206 SER B 216 1 11 HELIX 15 15 LYS C 33 THR C 37 5 5 HELIX 16 16 ASN C 61 GLN C 77 1 17 HELIX 17 17 GLY C 108 LYS C 114 1 7 HELIX 18 18 LYS C 114 SER C 121 1 8 HELIX 19 19 ASP C 126 CYS C 137 1 12 HELIX 20 20 CYS C 137 VAL C 142 1 6 HELIX 21 21 ASP C 206 SER C 216 1 11 SHEET 1 A 9 ILE A 53 ARG A 58 0 SHEET 2 A 9 LEU A 167 TYR A 171 -1 N SER A 168 O THR A 57 SHEET 3 A 9 THR A 25 ILE A 31 -1 N ARG A 26 O TYR A 171 SHEET 4 A 9 THR A 14 ASP A 22 -1 O ILE A 15 N ILE A 31 SHEET 5 A 9 TYR A 192 ASP A 201 1 O ASP A 195 N THR A 14 SHEET 6 A 9 VAL A 277 SER A 287 -1 N LEU A 278 O VAL A 200 SHEET 7 A 9 TYR A 260 ASP A 272 -1 O GLY A 268 N LYS A 281 SHEET 8 A 9 LYS A 239 THR A 250 -1 O SER A 240 N TYR A 271 SHEET 9 A 9 LYS A 228 ALA A 235 -1 O LYS A 228 N GLU A 247 SHEET 1 B 4 VAL A 43 ILE A 49 0 SHEET 2 B 4 TYR A 149 LEU A 155 -1 O TYR A 149 N ILE A 49 SHEET 3 B 4 TYR A 101 ASN A 107 -1 O SER A 102 N VAL A 154 SHEET 4 B 4 LYS A 94 LYS A 97 -1 N LYS A 94 O CYS A 105 SHEET 1 C 2 LYS A 177 VAL A 180 0 SHEET 2 C 2 VAL A 293 ASN A 296 -1 O VAL A 293 N VAL A 180 SHEET 1 D 9 ILE B 53 ARG B 58 0 SHEET 2 D 9 LEU B 167 TYR B 171 -1 N SER B 168 O THR B 57 SHEET 3 D 9 ARG B 26 ILE B 31 -1 N ARG B 26 O TYR B 171 SHEET 4 D 9 THR B 14 GLN B 20 -1 N ILE B 15 O ILE B 31 SHEET 5 D 9 TYR B 192 ASP B 201 1 O ASP B 195 N THR B 14 SHEET 6 D 9 VAL B 277 SER B 287 -1 N LEU B 278 O VAL B 200 SHEET 7 D 9 TYR B 260 ASP B 272 -1 O GLY B 268 N LYS B 281 SHEET 8 D 9 LYS B 239 THR B 250 -1 O SER B 240 N TYR B 271 SHEET 9 D 9 LYS B 228 ALA B 235 -1 O LYS B 228 N GLU B 247 SHEET 1 E 4 VAL B 43 ILE B 49 0 SHEET 2 E 4 TYR B 149 LEU B 155 -1 O TYR B 149 N ILE B 49 SHEET 3 E 4 TYR B 101 ASN B 107 -1 O SER B 102 N VAL B 154 SHEET 4 E 4 LYS B 94 LYS B 97 -1 O LYS B 94 N CYS B 105 SHEET 1 F 2 LYS B 177 VAL B 180 0 SHEET 2 F 2 VAL B 293 ASN B 296 -1 O VAL B 293 N VAL B 180 SHEET 1 G 9 ILE C 53 ARG C 58 0 SHEET 2 G 9 LEU C 167 TYR C 171 -1 N SER C 168 O THR C 57 SHEET 3 G 9 ARG C 26 ILE C 31 -1 N ARG C 26 O TYR C 171 SHEET 4 G 9 THR C 14 GLN C 20 -1 O ILE C 15 N ILE C 31 SHEET 5 G 9 TYR C 192 ASP C 201 1 O ASP C 195 N THR C 14 SHEET 6 G 9 VAL C 277 SER C 287 -1 N LEU C 278 O VAL C 200 SHEET 7 G 9 LYS C 259 ASP C 272 -1 O GLY C 268 N LYS C 281 SHEET 8 G 9 LYS C 239 GLU C 251 -1 O SER C 240 N TYR C 271 SHEET 9 G 9 LYS C 228 ALA C 235 -1 O LYS C 228 N GLU C 247 SHEET 1 H 4 VAL C 43 ILE C 49 0 SHEET 2 H 4 TYR C 149 LEU C 155 -1 O TYR C 149 N ILE C 49 SHEET 3 H 4 TYR C 101 ASN C 107 -1 O SER C 102 N VAL C 154 SHEET 4 H 4 LYS C 94 LYS C 97 -1 O LYS C 94 N CYS C 105 SHEET 1 I 2 LYS C 177 VAL C 180 0 SHEET 2 I 2 VAL C 293 ASN C 296 -1 O VAL C 293 N VAL C 180 LINK SG CYS A 137 S1 DTT A1137 1555 1555 2.07 LINK SG CYS B 137 S1 DTT B2137 1555 1555 2.05 LINK SG CYS C 137 S1 DTT C3137 1555 1555 2.07 SITE 1 AC1 4 MET A 46 TYR A 133 CYS A 137 ALA A 183 SITE 1 AC2 5 MET B 46 TYR B 133 CYS B 137 ALA B 183 SITE 2 AC2 5 GLU B 185 SITE 1 AC3 4 MET C 46 TYR C 133 CYS C 137 ALA C 183 CRYST1 77.608 89.303 136.099 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012885 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011198 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007348 0.00000