HEADER LIGASE 02-MAR-01 1I6L TITLE 1.7 HIGH RESOLUTION EXPERIMENTAL PHASES FOR TRYPTOPHANYL-TRNA TITLE 2 SYNTHETASE COMPLEXED WITH TRYPTOPHANYL-5'AMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRYPTOPHANYL-TRNA SYNTHETASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TRPRS; COMPND 5 EC: 6.1.1.2 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 1422 KEYWDS CLASS I TRNA SYNTHETASE, AARS, INDUCED FIT, TRPRS, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR P.RETAILLEAU,C.W.CARTER REVDAT 6 24-JUL-19 1I6L 1 REMARK LINK REVDAT 5 13-JUL-11 1I6L 1 VERSN REVDAT 4 24-FEB-09 1I6L 1 VERSN REVDAT 3 01-APR-03 1I6L 1 JRNL REVDAT 2 24-APR-02 1I6L 1 REMARK REVDAT 1 07-NOV-01 1I6L 0 JRNL AUTH P.RETAILLEAU,Y.YIN,M.HU,J.ROACH,G.BRICOGNE,C.VONRHEIN, JRNL AUTH 2 P.ROVERSI,E.BLANC,R.M.SWEET,C.W.CARTER JRNL TITL HIGH-RESOLUTION EXPERIMENTAL PHASES FOR TRYPTOPHANYL-TRNA JRNL TITL 2 SYNTHETASE (TRPRS) COMPLEXED WITH TRYPTOPHANYL-5'AMP. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 57 1595 2001 JRNL REFN ISSN 0907-4449 JRNL PMID 11679724 JRNL DOI 10.1107/S090744490101215X REMARK 2 REMARK 2 RESOLUTION. 1.72 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SMART,VONRHEIN,WOMACK, REMARK 3 : MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.72 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 44725 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4417 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : NULL REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2590 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 109 REMARK 3 SOLVENT ATOMS : 351 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2772 ; 0.800 ; NULL REMARK 3 BOND ANGLES : 3733 ; 1.300 ; NULL REMARK 3 TORSION ANGLES : 1604 ; 0.000 ; NULL REMARK 3 TRIGONAL CARBON PLANES : 86 ; 2.000 ; NULL REMARK 3 GENERAL PLANES : 427 ; 5.000 ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS : 2663 ; 20.000 ; NULL REMARK 3 BAD NON-BONDED CONTACTS : 79 ; 10.000 ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : NULL ; NULL ; NULL REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : NULL ; NULL ; NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.019 REMARK 3 BOND ANGLES (DEGREES) : 1.41 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : NULL REMARK 3 OTHER TORSION ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1I6L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-MAR-01. REMARK 100 THE DEPOSITION ID IS D_1000012968. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-APR-99 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.60 REMARK 200 NUMBER OF CRYSTALS USED : 4 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X12C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRANDEIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51522 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.720 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 200 DATA REDUNDANCY : 10.30 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07800 REMARK 200 FOR THE DATA SET : 8.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.72 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 68.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.57100 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP, BUSTER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: POTASSIUM PHOSPHATE, AMMONIUM SULFATE, REMARK 280 MAGNESIUM SULFATE, PH 7.60, MICRODIALYSIS, TEMPERATURE 310K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 116.32500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 29.88500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 29.88500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 174.48750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 29.88500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 29.88500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 58.16250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 29.88500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 29.88500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 174.48750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 29.88500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 29.88500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 58.16250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 116.32500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 12160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -196.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 59.77000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 59.77000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 116.32500 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 327 REMARK 465 ARG A 328 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 285 CG GLU A 285 CD 0.091 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ALA A 117 N - CA - C ANGL. DEV. = -19.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 22 -70.14 -124.85 REMARK 500 ARG A 182 84.66 -150.66 REMARK 500 THR A 222 -120.31 -123.44 REMARK 500 ASP A 231 88.96 -169.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 360 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 361 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 362 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 363 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 364 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 365 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 366 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NH4 A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TYM A 350 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 370 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 371 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 372 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 373 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 374 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 375 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1I6K RELATED DB: PDB REMARK 900 1I6K IS TRYPTOPHANYL-TRNA SYNTHETASE COMPLEXED WITH TRYPTOPHANYL-5' REMARK 900 AMP DBREF 1I6L A 1 328 UNP P00953 SYW_BACST 1 328 SEQADV 1I6L MSE A 1 UNP P00953 MET 1 MODIFIED RESIDUE SEQADV 1I6L MSE A 92 UNP P00953 MET 92 MODIFIED RESIDUE SEQADV 1I6L MSE A 105 UNP P00953 MET 105 MODIFIED RESIDUE SEQADV 1I6L MSE A 129 UNP P00953 MET 129 MODIFIED RESIDUE SEQADV 1I6L MSE A 184 UNP P00953 MET 184 MODIFIED RESIDUE SEQADV 1I6L MSE A 193 UNP P00953 MET 193 MODIFIED RESIDUE SEQADV 1I6L MSE A 291 UNP P00953 MET 291 MODIFIED RESIDUE SEQADV 1I6L MSE A 314 UNP P00953 MET 314 MODIFIED RESIDUE SEQADV 1I6L MSE A 318 UNP P00953 MET 318 MODIFIED RESIDUE SEQADV 1I6L MSE A 322 UNP P00953 MET 322 MODIFIED RESIDUE SEQRES 1 A 328 MSE LYS THR ILE PHE SER GLY ILE GLN PRO SER GLY VAL SEQRES 2 A 328 ILE THR ILE GLY ASN TYR ILE GLY ALA LEU ARG GLN PHE SEQRES 3 A 328 VAL GLU LEU GLN HIS GLU TYR ASN CYS TYR PHE CYS ILE SEQRES 4 A 328 VAL ASP GLN HIS ALA ILE THR VAL TRP GLN ASP PRO HIS SEQRES 5 A 328 GLU LEU ARG GLN ASN ILE ARG ARG LEU ALA ALA LEU TYR SEQRES 6 A 328 LEU ALA VAL GLY ILE ASP PRO THR GLN ALA THR LEU PHE SEQRES 7 A 328 ILE GLN SER GLU VAL PRO ALA HIS ALA GLN ALA ALA TRP SEQRES 8 A 328 MSE LEU GLN CYS ILE VAL TYR ILE GLY GLU LEU GLU ARG SEQRES 9 A 328 MSE THR GLN PHE LYS GLU LYS SER ALA GLY LYS GLU ALA SEQRES 10 A 328 VAL SER ALA GLY LEU LEU THR TYR PRO PRO LEU MSE ALA SEQRES 11 A 328 ALA ASP ILE LEU LEU TYR ASN THR ASP ILE VAL PRO VAL SEQRES 12 A 328 GLY GLU ASP GLN LYS GLN HIS ILE GLU LEU THR ARG ASP SEQRES 13 A 328 LEU ALA GLU ARG PHE ASN LYS ARG TYR GLY GLU LEU PHE SEQRES 14 A 328 THR ILE PRO GLU ALA ARG ILE PRO LYS VAL GLY ALA ARG SEQRES 15 A 328 ILE MSE SER LEU VAL ASP PRO THR LYS LYS MSE SER LYS SEQRES 16 A 328 SER ASP PRO ASN PRO LYS ALA TYR ILE THR LEU LEU ASP SEQRES 17 A 328 ASP ALA LYS THR ILE GLU LYS LYS ILE LYS SER ALA VAL SEQRES 18 A 328 THR ASP SER GLU GLY THR ILE ARG TYR ASP LYS GLU ALA SEQRES 19 A 328 LYS PRO GLY ILE SER ASN LEU LEU ASN ILE TYR SER THR SEQRES 20 A 328 LEU SER GLY GLN SER ILE GLU GLU LEU GLU ARG GLN TYR SEQRES 21 A 328 GLU GLY LYS GLY TYR GLY VAL PHE LYS ALA ASP LEU ALA SEQRES 22 A 328 GLN VAL VAL ILE GLU THR LEU ARG PRO ILE GLN GLU ARG SEQRES 23 A 328 TYR HIS HIS TRP MSE GLU SER GLU GLU LEU ASP ARG VAL SEQRES 24 A 328 LEU ASP GLU GLY ALA GLU LYS ALA ASN ARG VAL ALA SER SEQRES 25 A 328 GLU MSE VAL ARG LYS MSE GLU GLN ALA MSE GLY LEU GLY SEQRES 26 A 328 ARG ARG ARG MODRES 1I6L MSE A 1 MET SELENOMETHIONINE MODRES 1I6L MSE A 92 MET SELENOMETHIONINE MODRES 1I6L MSE A 105 MET SELENOMETHIONINE MODRES 1I6L MSE A 129 MET SELENOMETHIONINE MODRES 1I6L MSE A 184 MET SELENOMETHIONINE MODRES 1I6L MSE A 193 MET SELENOMETHIONINE MODRES 1I6L MSE A 291 MET SELENOMETHIONINE MODRES 1I6L MSE A 314 MET SELENOMETHIONINE MODRES 1I6L MSE A 318 MET SELENOMETHIONINE MODRES 1I6L MSE A 322 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 92 8 HET MSE A 105 8 HET MSE A 129 8 HET MSE A 184 8 HET MSE A 193 8 HET MSE A 291 8 HET MSE A 314 8 HET MSE A 318 8 HET MSE A 322 8 HET SO4 A 360 5 HET SO4 A 361 5 HET SO4 A 362 5 HET SO4 A 363 5 HET SO4 A 364 5 HET SO4 A 365 5 HET SO4 A 366 5 HET NH4 A 400 1 HET TYM A 350 37 HET GOL A 370 6 HET GOL A 371 6 HET GOL A 372 6 HET GOL A 373 6 HET GOL A 374 6 HET GOL A 375 6 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION HETNAM NH4 AMMONIUM ION HETNAM TYM TRYPTOPHANYL-5'AMP HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 2 SO4 7(O4 S 2-) FORMUL 9 NH4 H4 N 1+ FORMUL 10 TYM C21 H24 N7 O8 P FORMUL 11 GOL 6(C3 H8 O3) FORMUL 17 HOH *351(H2 O) HELIX 1 1 THR A 15 ALA A 22 1 8 HELIX 2 2 ALA A 22 GLN A 30 1 9 HELIX 3 3 VAL A 40 ILE A 45 1 6 HELIX 4 4 ASP A 50 VAL A 68 1 19 HELIX 5 5 SER A 81 VAL A 83 5 3 HELIX 6 6 PRO A 84 CYS A 95 1 12 HELIX 7 7 TYR A 98 ARG A 104 1 7 HELIX 8 8 MSE A 105 ALA A 113 1 9 HELIX 9 9 SER A 119 THR A 124 1 6 HELIX 10 10 THR A 124 LEU A 135 1 12 HELIX 11 11 GLY A 144 ASP A 146 5 3 HELIX 12 12 GLN A 147 GLY A 166 1 20 HELIX 13 13 ASN A 199 TYR A 203 5 5 HELIX 14 14 ASP A 209 ALA A 220 1 12 HELIX 15 15 LYS A 235 GLY A 250 1 16 HELIX 16 16 SER A 252 TYR A 260 1 9 HELIX 17 17 GLY A 264 GLU A 292 1 29 HELIX 18 18 GLU A 294 GLY A 323 1 30 SHEET 1 A 3 THR A 3 ILE A 8 0 SHEET 2 A 3 ASN A 34 ILE A 39 1 O ASN A 34 N ILE A 4 SHEET 3 A 3 THR A 76 ILE A 79 1 N THR A 76 O CYS A 35 SHEET 1 B 2 ILE A 140 PRO A 142 0 SHEET 2 B 2 GLU A 173 ARG A 175 1 O GLU A 173 N VAL A 141 LINK C MSE A 1 N LYS A 2 1555 1555 1.33 LINK C TRP A 91 N MSE A 92 1555 1555 1.33 LINK C MSE A 92 N LEU A 93 1555 1555 1.35 LINK C ARG A 104 N MSE A 105 1555 1555 1.32 LINK C MSE A 105 N THR A 106 1555 1555 1.32 LINK C LEU A 128 N MSE A 129 1555 1555 1.35 LINK C MSE A 129 N ALA A 130 1555 1555 1.34 LINK C ILE A 183 N MSE A 184 1555 1555 1.35 LINK C MSE A 184 N SER A 185 1555 1555 1.34 LINK C LYS A 192 N MSE A 193 1555 1555 1.34 LINK C MSE A 193 N SER A 194 1555 1555 1.32 LINK C TRP A 290 N MSE A 291 1555 1555 1.33 LINK C MSE A 291 N GLU A 292 1555 1555 1.33 LINK C GLU A 313 N MSE A 314 1555 1555 1.34 LINK C MSE A 314 N VAL A 315 1555 1555 1.36 LINK C LYS A 317 N MSE A 318 1555 1555 1.33 LINK C MSE A 318 N GLU A 319 1555 1555 1.33 LINK C ALA A 321 N MSE A 322 1555 1555 1.35 LINK C MSE A 322 N GLY A 323 1555 1555 1.31 SITE 1 AC1 7 TYR A 98 ARG A 160 LYS A 163 ARG A 164 SITE 2 AC1 7 HOH A 559 HOH A 625 HOH A 626 SITE 1 AC2 3 THR A 222 TYR A 265 LYS A 269 SITE 1 AC3 4 ARG A 55 GLN A 320 GOL A 373 HOH A 637 SITE 1 AC4 4 GLY A 264 TYR A 265 GLY A 266 HOH A 537 SITE 1 AC5 4 ARG A 182 MSE A 184 THR A 190 LYS A 232 SITE 1 AC6 7 LYS A 178 GLY A 180 ALA A 181 ARG A 182 SITE 2 AC6 7 TYR A 230 ASN A 243 HOH A 513 SITE 1 AC7 3 ARG A 60 TYR A 287 HOH A 549 SITE 1 AC8 5 GLN A 30 TYR A 33 GLN A 74 HOH A 584 SITE 2 AC8 5 HOH A 588 SITE 1 AC9 28 PHE A 5 SER A 6 GLY A 7 ILE A 8 SITE 2 AC9 28 GLN A 9 GLY A 17 ASN A 18 GLY A 21 SITE 3 AC9 28 ALA A 22 VAL A 40 HIS A 43 TYR A 125 SITE 4 AC9 28 MSE A 129 ASP A 132 ILE A 133 VAL A 143 SITE 5 AC9 28 GLY A 144 ASP A 146 GLN A 147 GLY A 180 SITE 6 AC9 28 ALA A 181 ARG A 182 ILE A 183 LYS A 192 SITE 7 AC9 28 MSE A 193 LYS A 195 HOH A 402 HOH A 574 SITE 1 BC1 11 ASN A 34 CYS A 35 TYR A 36 THR A 73 SITE 2 BC1 11 GLN A 74 ALA A 75 THR A 76 LYS A 215 SITE 3 BC1 11 LYS A 306 HOH A 477 HOH A 588 SITE 1 BC2 9 SER A 11 GLY A 12 ILE A 14 ASN A 57 SITE 2 BC2 9 ARG A 60 THR A 205 HOH A 434 HOH A 639 SITE 3 BC2 9 HOH A 674 SITE 1 BC3 6 LYS A 211 LYS A 215 LYS A 306 ARG A 309 SITE 2 BC3 6 GOL A 375 HOH A 485 SITE 1 BC4 7 HIS A 52 ARG A 55 GLN A 56 ARG A 59 SITE 2 BC4 7 SO4 A 362 HOH A 461 HOH A 551 SITE 1 BC5 4 LYS A 192 SER A 194 LYS A 195 SER A 196 SITE 1 BC6 6 GLU A 214 LYS A 215 LYS A 218 GOL A 372 SITE 2 BC6 6 HOH A 521 HOH A 576 CRYST1 59.770 59.770 232.650 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016731 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016731 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004298 0.00000 HETATM 1 N MSE A 1 75.964 21.472 51.337 1.00 28.02 N HETATM 2 CA MSE A 1 75.270 22.064 50.192 1.00 25.93 C HETATM 3 C MSE A 1 73.811 22.188 50.564 1.00 25.64 C HETATM 4 O MSE A 1 73.325 21.421 51.394 1.00 26.12 O HETATM 5 CB MSE A 1 75.558 21.311 48.897 1.00 44.13 C HETATM 6 CG MSE A 1 74.472 20.510 48.232 1.00 38.37 C HETATM 7 SE MSE A 1 75.076 19.487 46.658 1.00 42.21 SE HETATM 8 CE MSE A 1 76.400 20.698 45.987 1.00 54.08 C