HEADER HYDROLASE/HYDROLASE INHIBITOR 07-MAR-01 1I73 TITLE COMPLEX OF PRO-LEU-L-TRP PHOSPHONATE WITH THE CATALITIC DOMAIN OF TITLE 2 MATRIX METALLO PROTEINASE-8 (MET80 FORM) COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEUTROPHIL COLLAGENASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 80-242; COMPND 5 SYNONYM: MATRIX METALLOPROTEINASE-8; MMP-8; COMPND 6 EC: 3.4.24.34; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: THREE RESIDUE PEPTIDE INHIBITOR; COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 OTHER_DETAILS: THE THREE RESIDUE PEPTIDE INHIBITOR WAS CHEMICALLY SOURCE 10 SYNTHESIZED KEYWDS METALLOPROTEASE-INHIBITOR COMPLEX, HYDROLASE-HYDROLASE INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR E.GAVUZZO,G.POCHETTI,F.MAZZA,C.GALLINA,B.GORINI,S.D'ALESSIO,M.PIEPER, AUTHOR 2 H.TSCHESCHE,P.A.TUCKER REVDAT 6 09-AUG-23 1I73 1 REMARK LINK REVDAT 5 04-OCT-17 1I73 1 REMARK REVDAT 4 13-JUL-11 1I73 1 VERSN REVDAT 3 24-FEB-09 1I73 1 VERSN REVDAT 2 01-APR-03 1I73 1 JRNL REVDAT 1 21-MAR-01 1I73 0 JRNL AUTH E.GAVUZZO,G.POCHETTI,F.MAZZA,C.GALLINA,B.GORINI,S.D'ALESSIO, JRNL AUTH 2 M.PIEPER,H.TSCHESCHE,P.A.TUCKER JRNL TITL TWO CRYSTAL STRUCTURES OF HUMAN NEUTROPHIL COLLAGENASE, ONE JRNL TITL 2 COMPLEXED WITH A PRIMED- AND THE OTHER WITH AN UNPRIMED-SIDE JRNL TITL 3 INHIBITOR: IMPLICATIONS FOR DRUG DESIGN. JRNL REF J.MED.CHEM. V. 43 3377 2000 JRNL REFN ISSN 0022-2623 JRNL PMID 10978185 JRNL DOI 10.1021/JM9909589 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH F.GRAMS,P.REINEMER,J.C.POWERS,T.KLEINE,M.PIEPER,H.TSCHESCHE, REMARK 1 AUTH 2 R.HUBER,W.BODE REMARK 1 TITL X-RAY STRUCTURES OF HUMAN NEUTROPHIL COLLAGENASE COMPLEXED REMARK 1 TITL 2 WITH PEPTIDE HYDROXAMATE AND PEPTIDE THIOL INHIBITORS. REMARK 1 TITL 3 IMPLICATIONS FOR SUBSTRATE BINDING AND RATIONAL DRUG DESIGN REMARK 1 REF EUR.J.BIOCHEM. V. 228 830 1995 REMARK 1 REFN ISSN 0014-2956 REMARK 1 REFERENCE 2 REMARK 1 AUTH H.MATTER,W.SCHWAB,D.BARBIER,G.BILLEN,B.HAASE,B.NEISES, REMARK 1 AUTH 2 M.SCHUDOK,W.THORWART,H.SCHREUDER,V.BRACHVOGEL,P.LOENZE, REMARK 1 AUTH 3 K.U.WEITHMANN REMARK 1 TITL QUANTITATIVE STRUCTURE-ACTIVITY RELATIONSHIP OF HUMAN REMARK 1 TITL 2 NEUTROPHIL COLLAGENASE (MMP8-8) INHIBITORS USING COMPARATIVE REMARK 1 TITL 3 MOLECULAR FIELD ANALYSIS AND X-RAY STRUCTURE ANALYSIS REMARK 1 REF J.MED.CHEM. V. 42 1908 1999 REMARK 1 REFN ISSN 0022-2623 REMARK 1 DOI 10.1021/JM980631S REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELXL REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.138 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.134 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 1508 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 28619 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : 0.117 REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE (F>4SIG(F)) : 0.179 REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : 2399 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1314 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 281 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : 1589.0 REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : 1203.0 REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : 6 REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : 14472 REMARK 3 NUMBER OF RESTRAINTS : 17466 REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 ANGLE DISTANCES (A) : 0.025 REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : NULL REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : NULL REMARK 3 ZERO CHIRAL VOLUMES (A**3) : 0.152 REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : 0.307 REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : 0.022 REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : NULL REMARK 3 SIMILAR ADP COMPONENTS (A**2) : NULL REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: NULL REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : ENGH AND HUBER REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1I73 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-MAR-01. REMARK 100 THE DEPOSITION ID IS D_1000012986. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUL-98 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : BW7B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.84 REMARK 200 MONOCHROMATOR : TRIANGULAR MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30229 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.3 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.25800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: PDB ENTRY 1JAP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 6000, MES-NAOH, NACL, CACL2, REMARK 280 ZNCL2, PH 6.00, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 16.49150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 35.24300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.33650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 35.24300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 16.49150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.33650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -67.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PAT B 3 C O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 90 CD - NE - CZ ANGL. DEV. = 9.1 DEGREES REMARK 500 ARG A 90 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 90 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 96 CD - NE - CZ ANGL. DEV. = 33.7 DEGREES REMARK 500 ARG A 111 CD - NE - CZ ANGL. DEV. = 11.7 DEGREES REMARK 500 ARG A 111 NE - CZ - NH1 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG A 111 NE - CZ - NH2 ANGL. DEV. = 7.5 DEGREES REMARK 500 ARG A 130 NE - CZ - NH1 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG A 130 NE - CZ - NH2 ANGL. DEV. = 5.0 DEGREES REMARK 500 ARG A 145 NE - CZ - NH1 ANGL. DEV. = -4.8 DEGREES REMARK 500 ARG A 145 NE - CZ - NH2 ANGL. DEV. = 3.0 DEGREES REMARK 500 PRO B 1 CA - N - CD ANGL. DEV. = -8.6 DEGREES REMARK 500 PRO B 1 N - CA - C ANGL. DEV. = 27.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 85 57.59 37.82 REMARK 500 ARG A 145 -127.39 45.60 REMARK 500 HIS A 147 33.89 -146.72 REMARK 500 ASN A 157 -165.89 66.32 REMARK 500 ASP A 210 107.07 -56.14 REMARK 500 ASN A 226 43.05 -141.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 996 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 137 O REMARK 620 2 GLY A 169 O 165.3 REMARK 620 3 GLY A 171 O 97.3 93.6 REMARK 620 4 ASP A 173 OD1 87.1 102.7 90.2 REMARK 620 5 HOH A 397 O 86.1 86.2 80.2 167.4 REMARK 620 6 HOH A 402 O 86.0 81.6 169.6 99.8 90.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 998 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 147 NE2 REMARK 620 2 ASP A 149 OD1 107.1 REMARK 620 3 HIS A 162 NE2 116.0 115.6 REMARK 620 4 HIS A 175 ND1 106.3 95.2 114.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 997 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 154 OD1 REMARK 620 2 GLY A 155 O 88.4 REMARK 620 3 ASN A 157 O 90.4 86.3 REMARK 620 4 ILE A 159 O 87.7 175.9 92.4 REMARK 620 5 ASP A 177 OD2 90.0 86.0 172.3 95.3 REMARK 620 6 GLU A 180 OE2 178.5 92.8 88.9 91.0 90.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 999 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 197 NE2 REMARK 620 2 HIS A 201 NE2 106.0 REMARK 620 3 HIS A 207 NE2 111.8 97.8 REMARK 620 4 PAT B 3 O2P 124.7 120.4 91.1 REMARK 620 5 PAT B 3 O1P 98.3 84.0 147.8 61.4 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 996 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 997 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 998 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 999 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN B OF THREE RESIDUE REMARK 800 PEPTIDE INHIBITOR REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1JAP RELATED DB: PDB REMARK 900 COMPLEX OF PRO-LEU-GLY-HYDROXYLAMINE WITH THE CATALYTIC DOMAIN OF REMARK 900 MATRIX METALLO PROTEINASE-8 (MET80 FORM) REMARK 900 RELATED ID: 1BZS RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MMP8 COMPLEXED WITH HMR2909 REMARK 900 RELATED ID: 1I76 RELATED DB: PDB REMARK 900 COMPLEX OF 2-(BIPHENYL-4-SULFONYL)-1,2,3,4-TETRAHYDRO-ISOQUINOLINE- REMARK 900 3-CARBOXYLIC ACID (D-TIC DERIVATIVE) WITH T CATALITIC DOMAIN OF REMARK 900 MATRIX METALLO PROTEINASE-8 (MET80 FORM) DBREF 1I73 A 80 242 UNP P22894 MM08_HUMAN 100 262 DBREF 1I73 B 1 3 PDB 1I73 1I73 1 3 SEQRES 1 A 163 MET LEU THR PRO GLY ASN PRO LYS TRP GLU ARG THR ASN SEQRES 2 A 163 LEU THR TYR ARG ILE ARG ASN TYR THR PRO GLN LEU SER SEQRES 3 A 163 GLU ALA GLU VAL GLU ARG ALA ILE LYS ASP ALA PHE GLU SEQRES 4 A 163 LEU TRP SER VAL ALA SER PRO LEU ILE PHE THR ARG ILE SEQRES 5 A 163 SER GLN GLY GLU ALA ASP ILE ASN ILE ALA PHE TYR GLN SEQRES 6 A 163 ARG ASP HIS GLY ASP ASN SER PRO PHE ASP GLY PRO ASN SEQRES 7 A 163 GLY ILE LEU ALA HIS ALA PHE GLN PRO GLY GLN GLY ILE SEQRES 8 A 163 GLY GLY ASP ALA HIS PHE ASP ALA GLU GLU THR TRP THR SEQRES 9 A 163 ASN THR SER ALA ASN TYR ASN LEU PHE LEU VAL ALA ALA SEQRES 10 A 163 HIS GLU PHE GLY HIS SER LEU GLY LEU ALA HIS SER SER SEQRES 11 A 163 ASP PRO GLY ALA LEU MET TYR PRO ASN TYR ALA PHE ARG SEQRES 12 A 163 GLU THR SER ASN TYR SER LEU PRO GLN ASP ASP ILE ASP SEQRES 13 A 163 GLY ILE GLN ALA ILE TYR GLY SEQRES 1 B 3 PRO LEU PAT MODRES 1I73 PAT B 3 TRP ALPHA-PHOSPHONO-TRYPTOPHAN HET PAT B 3 16 HET CA A 996 1 HET CA A 997 1 HET ZN A 998 1 HET ZN A 999 1 HETNAM PAT ALPHA-PHOSPHONO-TRYPTOPHAN HETNAM CA CALCIUM ION HETNAM ZN ZINC ION FORMUL 2 PAT C11 H13 N2 O5 P FORMUL 3 CA 2(CA 2+) FORMUL 5 ZN 2(ZN 2+) FORMUL 7 HOH *281(H2 O) HELIX 1 1 SER A 105 VAL A 122 1 18 HELIX 2 2 ASN A 190 GLY A 204 1 15 HELIX 3 3 PRO A 230 GLY A 242 1 13 SHEET 1 A 5 ILE A 127 ARG A 130 0 SHEET 2 A 5 ASN A 92 ILE A 97 1 O LEU A 93 N THR A 129 SHEET 3 A 5 ILE A 138 TYR A 143 1 N ILE A 138 O THR A 94 SHEET 4 A 5 ALA A 174 ASP A 177 1 N ALA A 174 O ASN A 139 SHEET 5 A 5 ALA A 161 ALA A 163 -1 O HIS A 162 N HIS A 175 LINK C LEU B 2 N PAT B 3 1555 1555 1.36 LINK O ASP A 137 CA CA A 996 1555 1555 2.32 LINK NE2 HIS A 147 ZN ZN A 998 1555 1555 2.01 LINK OD1 ASP A 149 ZN ZN A 998 1555 1555 1.97 LINK OD1 ASP A 154 CA CA A 997 1555 1555 2.35 LINK O GLY A 155 CA CA A 997 1555 1555 2.29 LINK O ASN A 157 CA CA A 997 1555 1555 2.34 LINK O ILE A 159 CA CA A 997 1555 1555 2.29 LINK NE2 HIS A 162 ZN ZN A 998 1555 1555 1.96 LINK O GLY A 169 CA CA A 996 1555 1555 2.29 LINK O GLY A 171 CA CA A 996 1555 1555 2.29 LINK OD1 ASP A 173 CA CA A 996 1555 1555 2.36 LINK ND1 HIS A 175 ZN ZN A 998 1555 1555 2.07 LINK OD2 ASP A 177 CA CA A 997 1555 1555 2.31 LINK OE2 GLU A 180 CA CA A 997 1555 1555 2.26 LINK NE2 HIS A 197 ZN ZN A 999 1555 1555 2.01 LINK NE2 HIS A 201 ZN ZN A 999 1555 1555 2.10 LINK NE2 HIS A 207 ZN ZN A 999 1555 1555 2.01 LINK O HOH A 397 CA CA A 996 1555 1555 2.42 LINK O HOH A 402 CA CA A 996 1555 1555 2.38 LINK ZN ZN A 999 O2P PAT B 3 1555 1555 1.87 LINK ZN ZN A 999 O1P PAT B 3 1555 1555 2.66 CISPEP 1 ASN A 188 TYR A 189 0 0.26 SITE 1 AC1 6 ASP A 137 GLY A 169 GLY A 171 ASP A 173 SITE 2 AC1 6 HOH A 397 HOH A 402 SITE 1 AC2 6 ASP A 154 GLY A 155 ASN A 157 ILE A 159 SITE 2 AC2 6 ASP A 177 GLU A 180 SITE 1 AC3 4 HIS A 147 ASP A 149 HIS A 162 HIS A 175 SITE 1 AC4 4 HIS A 197 HIS A 201 HIS A 207 PAT B 3 SITE 1 AC5 17 SER A 151 ALA A 161 HIS A 162 ALA A 163 SITE 2 AC5 17 PHE A 164 HIS A 197 GLU A 198 HIS A 201 SITE 3 AC5 17 HIS A 207 HOH A 329 HOH A 394 HOH A 420 SITE 4 AC5 17 HOH A 555 ZN A 999 HOH B 478 HOH B 500 SITE 5 AC5 17 HOH B 512 CRYST1 32.983 68.673 70.486 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.030319 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014562 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014187 0.00000