HEADER CYTOKINE 16-MAR-01 1I8X TITLE SEMI-AUTOMATIC STRUCTURE DETERMINATION OF THE CG1 1-30 PEPTIDE BASED TITLE 2 ON ARIA COMPND MOL_ID: 1; COMPND 2 MOLECULE: GRANULIN-1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINUS (RESIDUES 1-30); COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THE PEPTIDE WAS CHEMICALLY SYNTHESIZED BY SOLID PHASE SOURCE 4 SYNTHESIS. THE SEQUENCE OF THE PEPTIDE IS NATURALLY FOUND IN SOURCE 5 CYPRINUS CARPIO (CARP). KEYWDS TWO BETA-HAIRPIN STACK, CYTOKINE EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR W.F.VRANKEN,S.JAMES,H.P.J.BENNETT,F.NI REVDAT 5 20-NOV-24 1I8X 1 REMARK REVDAT 4 27-OCT-21 1I8X 1 REMARK SEQADV REVDAT 3 24-FEB-09 1I8X 1 VERSN REVDAT 2 01-APR-03 1I8X 1 JRNL REVDAT 1 17-APR-02 1I8X 0 JRNL AUTH W.F.VRANKEN,S.JAMES,H.P.BENNETT,F.NI JRNL TITL SOLUTION STRUCTURES OF A 30-RESIDUE AMINO-TERMINAL DOMAIN OF JRNL TITL 2 THE CARP GRANULIN-1 PROTEIN AND ITS AMINO-TERMINALLY JRNL TITL 3 TRUNCATED 3-30 SUBFRAGMENT: IMPLICATIONS FOR THE JRNL TITL 4 CONFORMATIONAL STABILITY OF THE STACK OF TWO BETA-HAIRPINS. JRNL REF PROTEINS V. 47 14 2002 JRNL REFN ISSN 0887-3585 JRNL PMID 11870861 JRNL DOI 10.1002/PROT.10077.ABS REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.1, ARIA 1.0 REMARK 3 AUTHORS : BRUKER (XWINNMR), LINGE (ARIA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 NO NOE PEAKS WERE MANUALLY ASSIGNED - CALCULATION REMARK 3 IS BASED ON INITIAL NOE PEAK LISTS AND CHEMICAL REMARK 3 SHIFT ASSIGNMENTS COMBINED WITH AMBIGUOUS RESTRAINTS REMARK 3 USED IN ARIA. REMARK 4 REMARK 4 1I8X COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-MAR-01. REMARK 100 THE DEPOSITION ID IS D_1000013052. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 288 REMARK 210 PH : 4.5 REMARK 210 IONIC STRENGTH : 0.02 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : ACETATE BUFFER; ACETATE BUFFER REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; DQF-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SEMI-AUTOMATED CALCULATION BASED REMARK 210 ON A SET OF ARIA RUNS. REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 30 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 CYS A 4 -90.13 58.81 REMARK 500 1 ASP A 12 104.13 -59.52 REMARK 500 2 ALA A 7 -51.76 -124.03 REMARK 500 2 PRO A 20 -8.06 -59.31 REMARK 500 3 PRO A 20 -4.80 -58.36 REMARK 500 4 ALA A 6 15.76 58.40 REMARK 500 4 THR A 8 86.75 53.37 REMARK 500 4 ASP A 12 104.27 -59.65 REMARK 500 5 HIS A 3 -33.60 -133.90 REMARK 500 5 CYS A 4 -94.05 55.51 REMARK 500 5 ASP A 5 30.71 -94.37 REMARK 500 5 THR A 8 87.29 55.64 REMARK 500 6 HIS A 3 -64.21 -137.25 REMARK 500 6 CYS A 4 -86.40 60.93 REMARK 500 6 PRO A 20 -6.43 -59.45 REMARK 500 7 ASP A 5 18.19 59.98 REMARK 500 7 PRO A 20 -8.36 -56.62 REMARK 500 8 CYS A 4 -90.84 58.80 REMARK 500 8 ALA A 6 16.76 58.23 REMARK 500 8 ASP A 12 99.96 -55.43 REMARK 500 9 CYS A 4 -84.35 63.54 REMARK 500 9 ALA A 7 -31.46 -137.27 REMARK 500 9 ASP A 12 138.14 69.65 REMARK 500 10 CYS A 4 -87.10 60.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1QGM RELATED DB: PDB REMARK 900 1QGM IS THE SAME MOLECULE WITH A DIFFERENT STRUCTURE CALCULATION REMARK 900 METHOD REMARK 900 RELATED ID: 4351 RELATED DB: BMRB REMARK 900 4351 IS NMR DATA FOR MOLECULE DBREF 1I8X A 1 30 UNP P81013 GRN1_CYPCA 1 30 SEQADV 1I8X SER A 17 UNP P81013 CYS 17 ENGINEERED MUTATION SEQADV 1I8X SER A 27 UNP P81013 CYS 27 ENGINEERED MUTATION SEQRES 1 A 30 VAL ILE HIS CYS ASP ALA ALA THR ILE CYS PRO ASP GLY SEQRES 2 A 30 THR THR CYS SER LEU SER PRO TYR GLY VAL TRP TYR CYS SEQRES 3 A 30 SER PRO PHE SER SHEET 1 A 2 THR A 14 LEU A 18 0 SHEET 2 A 2 TRP A 24 PRO A 28 -1 N TYR A 25 O SER A 17 SSBOND 1 CYS A 4 CYS A 16 1555 1555 2.03 SSBOND 2 CYS A 10 CYS A 26 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1