HEADER METAL BINDING PROTEIN 29-MAR-01 1IBY TITLE RED COPPER PROTEIN NITROSOCYANIN FROM NITROSOMONAS EUROPAEA COMPND MOL_ID: 1; COMPND 2 MOLECULE: NITROSOCYANIN; COMPND 3 CHAIN: A, B, C, D SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NITROSOMONAS EUROPAEA; SOURCE 3 ORGANISM_TAXID: 915 KEYWDS RED COPPER, CUPREDOXIN, BETA HAIRPIN, NITROSOCYANIN, NITROSOMONAS KEYWDS 2 EUROPAEA, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.L.LIEBERMAN,D.M.ARCIERO,A.B.HOOPER,A.C.ROSENZWEIG REVDAT 4 07-FEB-24 1IBY 1 REMARK LINK REVDAT 3 31-JAN-18 1IBY 1 REMARK REVDAT 2 24-FEB-09 1IBY 1 VERSN REVDAT 1 06-JUN-01 1IBY 0 JRNL AUTH R.L.LIEBERMAN,D.M.ARCIERO,A.B.HOOPER,A.C.ROSENZWEIG JRNL TITL CRYSTAL STRUCTURE OF A NOVEL RED COPPER PROTEIN FROM JRNL TITL 2 NITROSOMONAS EUROPAEA. JRNL REF BIOCHEMISTRY V. 40 5674 2001 JRNL REFN ISSN 0006-2960 JRNL PMID 11341832 JRNL DOI 10.1021/BI0102611 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 14.98 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 370895.110 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 91.3 REMARK 3 NUMBER OF REFLECTIONS : 55245 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2797 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.75 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 81.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 7716 REMARK 3 BIN R VALUE (WORKING SET) : 0.2490 REMARK 3 BIN FREE R VALUE : 0.2780 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.20 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 427 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.013 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3452 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 581 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.78000 REMARK 3 B22 (A**2) : 1.78000 REMARK 3 B33 (A**2) : -3.56000 REMARK 3 B12 (A**2) : 0.18000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.18 REMARK 3 ESD FROM SIGMAA (A) : 0.15 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.21 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.16 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.600 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 28.40 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.860 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.560 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.470 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.770 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 4.390 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.43 REMARK 3 BSOL : 53.80 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARA REMARK 3 PARAMETER FILE 4 : HEXANEDIOL.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : ION.TOP REMARK 3 TOPOLOGY FILE 3 : WATER_REP.TOP REMARK 3 TOPOLOGY FILE 4 : HEXANEDIOL.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1IBY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-APR-01. REMARK 100 THE DEPOSITION ID IS D_1000013142. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUN-00 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 5ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.989 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58664 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 15.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.34300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HEPES, CITRATE, 1,6 HEXANEDIOL, PH REMARK 280 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 23K, TEMPERATURE REMARK 280 296.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 48.18900 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 27.82193 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 93.25733 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 48.18900 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 27.82193 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 93.25733 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 48.18900 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 27.82193 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 93.25733 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 48.18900 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 27.82193 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 93.25733 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 48.18900 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 27.82193 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 93.25733 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 48.18900 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 27.82193 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 93.25733 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 55.64386 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 186.51467 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 55.64386 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 186.51467 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 55.64386 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 186.51467 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 55.64386 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 186.51467 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 55.64386 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 186.51467 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 55.64386 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 186.51467 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH C1301 LIES ON A SPECIAL POSITION. REMARK 375 HOH D1334 LIES ON A SPECIAL POSITION. REMARK 375 HOH D1335 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU C 1 N ASN C 3 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 2 -20.03 93.10 REMARK 500 GLN A 70 88.48 -150.85 REMARK 500 ILE A 102 -60.13 -108.20 REMARK 500 HIS C 2 86.46 -54.35 REMARK 500 GLN C 70 108.54 -163.73 REMARK 500 GLN D 70 86.46 -150.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 601 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 60 OE1 REMARK 620 2 CYS A 95 SG 119.2 REMARK 620 3 HIS A 98 ND1 95.1 97.6 REMARK 620 4 HIS A 103 ND1 90.7 99.8 156.0 REMARK 620 5 HOH A1238 O 78.4 161.6 74.1 84.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU B 603 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 60 OE1 REMARK 620 2 CYS B 95 SG 114.2 REMARK 620 3 HIS B 98 ND1 96.2 96.8 REMARK 620 4 HIS B 103 ND1 86.1 100.1 160.3 REMARK 620 5 HOH B1310 O 80.1 164.8 75.6 85.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU C 602 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 60 OE1 REMARK 620 2 CYS C 95 SG 115.8 REMARK 620 3 HIS C 98 ND1 94.0 100.2 REMARK 620 4 HIS C 103 ND1 88.9 97.1 159.1 REMARK 620 5 HOH C1269 O 83.4 160.8 77.3 82.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU D 604 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU D 60 OE1 REMARK 620 2 CYS D 95 SG 116.5 REMARK 620 3 HIS D 98 ND1 94.8 98.2 REMARK 620 4 HIS D 103 ND1 90.2 99.3 157.3 REMARK 620 5 HOH D1270 O 76.2 166.8 76.4 83.3 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU C 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU B 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU D 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEZ A 1169 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEZ B 1170 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEZ D 1171 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEZ C 1172 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1IBZ RELATED DB: PDB REMARK 900 RED COPPER PROTEIN NITROSOCYANIN FROM NITROSOMONAS EUROPAEA REMARK 900 RELATED ID: 1IC0 RELATED DB: PDB REMARK 900 RED COPPER PROTEIN NITROSOCYANIN FROM NITROSOMONAS EUROPAEA DBREF 1IBY A 1 112 UNP Q820S6 Q820S6_NITEU 25 136 DBREF 1IBY B 1 112 UNP Q820S6 Q820S6_NITEU 25 136 DBREF 1IBY C 1 112 UNP Q820S6 Q820S6_NITEU 25 136 DBREF 1IBY D 1 112 UNP Q820S6 Q820S6_NITEU 25 136 SEQRES 1 A 112 GLU HIS ASN PHE ASN VAL VAL ILE ASN ALA TYR ASP THR SEQRES 2 A 112 THR ILE PRO GLU LEU ASN VAL GLU GLY VAL THR VAL LYS SEQRES 3 A 112 ASN ILE ARG ALA PHE ASN VAL LEU ASN GLU PRO GLU THR SEQRES 4 A 112 LEU VAL VAL LYS LYS GLY ASP ALA VAL LYS VAL VAL VAL SEQRES 5 A 112 GLU ASN LYS SER PRO ILE SER GLU GLY PHE SER ILE ASP SEQRES 6 A 112 ALA PHE GLY VAL GLN GLU VAL ILE LYS ALA GLY GLU THR SEQRES 7 A 112 LYS THR ILE SER PHE THR ALA ASP LYS ALA GLY ALA PHE SEQRES 8 A 112 THR ILE TRP CYS GLN LEU HIS PRO LYS ASN ILE HIS LEU SEQRES 9 A 112 PRO GLY THR LEU ASN VAL VAL GLU SEQRES 1 B 112 GLU HIS ASN PHE ASN VAL VAL ILE ASN ALA TYR ASP THR SEQRES 2 B 112 THR ILE PRO GLU LEU ASN VAL GLU GLY VAL THR VAL LYS SEQRES 3 B 112 ASN ILE ARG ALA PHE ASN VAL LEU ASN GLU PRO GLU THR SEQRES 4 B 112 LEU VAL VAL LYS LYS GLY ASP ALA VAL LYS VAL VAL VAL SEQRES 5 B 112 GLU ASN LYS SER PRO ILE SER GLU GLY PHE SER ILE ASP SEQRES 6 B 112 ALA PHE GLY VAL GLN GLU VAL ILE LYS ALA GLY GLU THR SEQRES 7 B 112 LYS THR ILE SER PHE THR ALA ASP LYS ALA GLY ALA PHE SEQRES 8 B 112 THR ILE TRP CYS GLN LEU HIS PRO LYS ASN ILE HIS LEU SEQRES 9 B 112 PRO GLY THR LEU ASN VAL VAL GLU SEQRES 1 C 112 GLU HIS ASN PHE ASN VAL VAL ILE ASN ALA TYR ASP THR SEQRES 2 C 112 THR ILE PRO GLU LEU ASN VAL GLU GLY VAL THR VAL LYS SEQRES 3 C 112 ASN ILE ARG ALA PHE ASN VAL LEU ASN GLU PRO GLU THR SEQRES 4 C 112 LEU VAL VAL LYS LYS GLY ASP ALA VAL LYS VAL VAL VAL SEQRES 5 C 112 GLU ASN LYS SER PRO ILE SER GLU GLY PHE SER ILE ASP SEQRES 6 C 112 ALA PHE GLY VAL GLN GLU VAL ILE LYS ALA GLY GLU THR SEQRES 7 C 112 LYS THR ILE SER PHE THR ALA ASP LYS ALA GLY ALA PHE SEQRES 8 C 112 THR ILE TRP CYS GLN LEU HIS PRO LYS ASN ILE HIS LEU SEQRES 9 C 112 PRO GLY THR LEU ASN VAL VAL GLU SEQRES 1 D 112 GLU HIS ASN PHE ASN VAL VAL ILE ASN ALA TYR ASP THR SEQRES 2 D 112 THR ILE PRO GLU LEU ASN VAL GLU GLY VAL THR VAL LYS SEQRES 3 D 112 ASN ILE ARG ALA PHE ASN VAL LEU ASN GLU PRO GLU THR SEQRES 4 D 112 LEU VAL VAL LYS LYS GLY ASP ALA VAL LYS VAL VAL VAL SEQRES 5 D 112 GLU ASN LYS SER PRO ILE SER GLU GLY PHE SER ILE ASP SEQRES 6 D 112 ALA PHE GLY VAL GLN GLU VAL ILE LYS ALA GLY GLU THR SEQRES 7 D 112 LYS THR ILE SER PHE THR ALA ASP LYS ALA GLY ALA PHE SEQRES 8 D 112 THR ILE TRP CYS GLN LEU HIS PRO LYS ASN ILE HIS LEU SEQRES 9 D 112 PRO GLY THR LEU ASN VAL VAL GLU HET CU A 601 1 HET HEZ A1169 8 HET CU B 603 1 HET HEZ B1170 8 HET CU C 602 1 HET HEZ C1172 8 HET CU D 604 1 HET HEZ D1171 8 HETNAM CU COPPER (II) ION HETNAM HEZ HEXANE-1,6-DIOL FORMUL 5 CU 4(CU 2+) FORMUL 6 HEZ 4(C6 H14 O2) FORMUL 13 HOH *581(H2 O) HELIX 1 1 ASP A 65 GLY A 68 5 4 HELIX 2 2 ASP B 65 GLY B 68 5 4 HELIX 3 3 ASP C 65 GLY C 68 5 4 HELIX 4 4 ASP D 65 GLY D 68 5 4 SHEET 1 A 4 VAL A 23 GLU A 36 0 SHEET 2 A 4 PHE A 4 VAL A 20 -1 N VAL A 7 O GLU A 36 SHEET 3 A 4 ALA A 47 ASN A 54 1 O LYS A 49 N PHE A 4 SHEET 4 A 4 THR A 78 THR A 84 -1 O LYS A 79 N VAL A 52 SHEET 1 B 3 THR A 39 LYS A 43 0 SHEET 2 B 3 GLY A 106 VAL A 111 1 O THR A 107 N LEU A 40 SHEET 3 B 3 GLY A 89 ILE A 93 -1 O GLY A 89 N VAL A 110 SHEET 1 C 2 GLU A 60 ILE A 64 0 SHEET 2 C 2 VAL A 69 ILE A 73 -1 O VAL A 69 N ILE A 64 SHEET 1 D 4 VAL B 23 GLU B 36 0 SHEET 2 D 4 PHE B 4 VAL B 20 -1 N VAL B 7 O GLU B 36 SHEET 3 D 4 ALA B 47 ASN B 54 1 O LYS B 49 N PHE B 4 SHEET 4 D 4 THR B 78 THR B 84 -1 O LYS B 79 N VAL B 52 SHEET 1 E 3 THR B 39 LYS B 43 0 SHEET 2 E 3 GLY B 106 VAL B 111 1 O THR B 107 N LEU B 40 SHEET 3 E 3 GLY B 89 ILE B 93 -1 O GLY B 89 N VAL B 110 SHEET 1 F 2 GLU B 60 ILE B 64 0 SHEET 2 F 2 VAL B 69 ILE B 73 -1 O VAL B 69 N ILE B 64 SHEET 1 G 4 VAL C 23 GLU C 36 0 SHEET 2 G 4 PHE C 4 VAL C 20 -1 O VAL C 7 N GLU C 36 SHEET 3 G 4 ALA C 47 ASN C 54 1 O LYS C 49 N PHE C 4 SHEET 4 G 4 THR C 78 THR C 84 -1 O LYS C 79 N VAL C 52 SHEET 1 H 3 THR C 39 LYS C 43 0 SHEET 2 H 3 GLY C 106 VAL C 111 1 O THR C 107 N LEU C 40 SHEET 3 H 3 GLY C 89 ILE C 93 -1 O GLY C 89 N VAL C 110 SHEET 1 I 2 GLU C 60 ILE C 64 0 SHEET 2 I 2 VAL C 69 ILE C 73 -1 O VAL C 69 N ILE C 64 SHEET 1 J 4 VAL D 23 GLU D 36 0 SHEET 2 J 4 PHE D 4 VAL D 20 -1 N VAL D 7 O GLU D 36 SHEET 3 J 4 ALA D 47 ASN D 54 1 O LYS D 49 N PHE D 4 SHEET 4 J 4 THR D 78 THR D 84 -1 O LYS D 79 N VAL D 52 SHEET 1 K 3 THR D 39 LYS D 43 0 SHEET 2 K 3 GLY D 106 VAL D 111 1 O THR D 107 N LEU D 40 SHEET 3 K 3 GLY D 89 ILE D 93 -1 O GLY D 89 N VAL D 110 SHEET 1 L 2 GLU D 60 ILE D 64 0 SHEET 2 L 2 VAL D 69 ILE D 73 -1 O VAL D 69 N ILE D 64 LINK OE1 GLU A 60 CU CU A 601 1555 1555 2.05 LINK SG CYS A 95 CU CU A 601 1555 1555 2.26 LINK ND1 HIS A 98 CU CU A 601 1555 1555 2.01 LINK ND1 HIS A 103 CU CU A 601 1555 1555 1.98 LINK CU CU A 601 O HOH A1238 1555 1555 2.06 LINK OE1 GLU B 60 CU CU B 603 1555 1555 2.11 LINK SG CYS B 95 CU CU B 603 1555 1555 2.29 LINK ND1 HIS B 98 CU CU B 603 1555 1555 2.06 LINK ND1 HIS B 103 CU CU B 603 1555 1555 1.97 LINK CU CU B 603 O HOH B1310 1555 1555 2.42 LINK OE1 GLU C 60 CU CU C 602 1555 1555 2.10 LINK SG CYS C 95 CU CU C 602 1555 1555 2.25 LINK ND1 HIS C 98 CU CU C 602 1555 1555 1.98 LINK ND1 HIS C 103 CU CU C 602 1555 1555 1.98 LINK CU CU C 602 O HOH C1269 1555 1555 2.38 LINK OE1 GLU D 60 CU CU D 604 1555 1555 2.11 LINK SG CYS D 95 CU CU D 604 1555 1555 2.27 LINK ND1 HIS D 98 CU CU D 604 1555 1555 2.02 LINK ND1 HIS D 103 CU CU D 604 1555 1555 1.95 LINK CU CU D 604 O HOH D1270 1555 1555 2.15 CISPEP 1 GLU A 36 PRO A 37 0 0.18 CISPEP 2 GLU B 36 PRO B 37 0 0.07 CISPEP 3 GLU C 36 PRO C 37 0 -0.37 CISPEP 4 GLU D 36 PRO D 37 0 0.14 SITE 1 AC1 5 GLU A 60 CYS A 95 HIS A 98 HIS A 103 SITE 2 AC1 5 HOH A1238 SITE 1 AC2 5 GLU C 60 CYS C 95 HIS C 98 HIS C 103 SITE 2 AC2 5 HOH C1269 SITE 1 AC3 5 GLU B 60 CYS B 95 HIS B 98 HIS B 103 SITE 2 AC3 5 HOH B1310 SITE 1 AC4 5 GLU D 60 CYS D 95 HIS D 98 HIS D 103 SITE 2 AC4 5 HOH D1270 SITE 1 AC5 10 PHE A 31 VAL A 33 ILE A 58 GLU A 60 SITE 2 AC5 10 HIS A 98 PRO A 99 HOH A1238 HOH A1245 SITE 3 AC5 10 ILE C 15 HEZ D1171 SITE 1 AC6 6 LEU A 18 VAL B 33 LYS B 49 LEU B 97 SITE 2 AC6 6 ILE B 102 HOH B1310 SITE 1 AC7 10 HEZ A1169 LEU D 18 PHE D 31 VAL D 33 SITE 2 AC7 10 LEU D 97 HIS D 98 PRO D 99 ILE D 102 SITE 3 AC7 10 HOH D1270 HOH D1300 SITE 1 AC8 11 LEU B 18 HOH B1281 PHE C 31 VAL C 33 SITE 2 AC8 11 ILE C 58 GLU C 60 LEU C 97 HIS C 98 SITE 3 AC8 11 PRO C 99 HOH C1269 HOH C1271 CRYST1 96.378 96.378 279.772 90.00 90.00 120.00 H 3 2 72 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010376 0.005990 0.000000 0.00000 SCALE2 0.000000 0.011981 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003574 0.00000