HEADER DNA BINDING PROTEIN/DNA 29-FEB-96 1IGN TITLE DNA-BINDING DOMAIN OF RAP1 IN COMPLEX WITH TELOMERIC DNA SITE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'- COMPND 3 D(*CP*CP*GP*CP*AP*CP*AP*CP*CP*CP*AP*CP*AP*CP*AP*CP*C P*AP*G)-3'); COMPND 4 CHAIN: C, E; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'- COMPND 8 D(*CP*CP*TP*GP*GP*TP*GP*TP*GP*TP*GP*GP*GP*TP*GP*TP*G P*CP*G)-3'); COMPND 9 CHAIN: D, F; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: PROTEIN (RAP1); COMPND 13 CHAIN: A, B; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 7 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 8 ORGANISM_TAXID: 4932; SOURCE 9 GENE: RAP1 DNA BINDING DOMAIN; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PET3C; SOURCE 13 EXPRESSION_SYSTEM_GENE: RAP1 DNA BINDING DOMAIN 353 TO 598; SOURCE 14 OTHER_DETAILS: T7 PROMOTER KEYWDS RAP1, YEAST, TELOMERES, HOMOEODOMAIN, DNA BINDING PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR P.KOENIG,R.GIRALDO,L.CHAPMAN,D.RHODES REVDAT 5 07-FEB-24 1IGN 1 REMARK REVDAT 4 28-JUN-17 1IGN 1 DBREF REVDAT 3 24-FEB-09 1IGN 1 VERSN REVDAT 2 01-APR-03 1IGN 1 JRNL REVDAT 1 27-JAN-97 1IGN 0 JRNL AUTH P.KONIG,R.GIRALDO,L.CHAPMAN,D.RHODES JRNL TITL THE CRYSTAL STRUCTURE OF THE DNA-BINDING DOMAIN OF YEAST JRNL TITL 2 RAP1 IN COMPLEX WITH TELOMERIC DNA. JRNL REF CELL(CAMBRIDGE,MASS.) V. 85 125 1996 JRNL REFN ISSN 0092-8674 JRNL PMID 8620531 JRNL DOI 10.1016/S0092-8674(00)81088-0 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH R.GIRALDO,D.RHODES REMARK 1 TITL THE YEAST TELOMERE-BINDING PROTEIN RAP1 BINDS TO AND REMARK 1 TITL 2 PROMOTES THE FORMATION OF DNA QUADRUPLEXES IN TELOMERIC DNA REMARK 1 REF EMBO J. V. 13 2411 1994 REMARK 1 REFN ISSN 0261-4189 REMARK 1 REFERENCE 2 REMARK 1 AUTH D.SHORE,K.NASMYTH REMARK 1 TITL PURIFICATION AND CLONING OF A DNA BINDING PROTEIN FROM YEAST REMARK 1 TITL 2 THAT BINDS TO BOTH SILENCER AND ACTIVATOR ELEMENTS REMARK 1 REF CELL(CAMBRIDGE,MASS.) V. 51 721 1987 REMARK 1 REFN ISSN 0092-8674 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 16.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.9 REMARK 3 NUMBER OF REFLECTIONS : 33264 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.294 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3178 REMARK 3 NUCLEIC ACID ATOMS : 1524 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 206 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.35 REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.017 REMARK 3 BOND ANGLES (DEGREES) : 2.900 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.610 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: ESTIMATED COORD. ERROR 0.426 ANGSTROMS REMARK 3 FINAL RMS COORD. SHIFT 0.111 ANGSTROMS REMARK 4 REMARK 4 1IGN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY NDB. REMARK 100 THE DEPOSITION ID IS D_1000174154. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-FEB-95 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM, CCP4 REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33281 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 16.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 4.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : 0.04700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 26.78667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 53.57333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: MTRIX REMARK 300 THE TRANSFORMATIONS PRESENTED ON MTRIX RECORDS BELOW REMARK 300 DESCRIBE NON-CRYSTALLOGRAPHIC RELATIONSHIPS AMONG THE REMARK 300 VARIOUS DOMAINS IN THIS ENTRY. APPLYING THE APPROPRIATE REMARK 300 MTRIX TRANSFORMATION TO THE RESIDUES LISTED FIRST WILL REMARK 300 YIELD APPROXIMATE COORDINATES FOR THE RESIDUES LISTED REMARK 300 SECOND. REMARK 300 REMARK 300 APPLIED TO TRANSFORMED TO REMARK 300 MTRIX RESIDUES RESIDUES RMSD REMARK 300 M1 A 360 .. A 594 B 360 .. B 594 0.62 REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 DC E 1 REMARK 465 GLY A 353 REMARK 465 ALA A 354 REMARK 465 LEU A 355 REMARK 465 PRO A 356 REMARK 465 SER A 357 REMARK 465 HIS A 358 REMARK 465 ASN A 359 REMARK 465 THR A 482 REMARK 465 ASP A 483 REMARK 465 GLU A 484 REMARK 465 ASP A 485 REMARK 465 THR A 486 REMARK 465 PRO A 487 REMARK 465 THR A 488 REMARK 465 ALA A 489 REMARK 465 ILE A 490 REMARK 465 ALA A 491 REMARK 465 ARG A 492 REMARK 465 ARG A 493 REMARK 465 ASN A 494 REMARK 465 MET A 495 REMARK 465 THR A 496 REMARK 465 MET A 497 REMARK 465 ASP A 498 REMARK 465 PRO A 499 REMARK 465 ASN A 500 REMARK 465 HIS A 501 REMARK 465 VAL A 502 REMARK 465 PRO A 503 REMARK 465 GLY A 504 REMARK 465 SER A 505 REMARK 465 GLU A 506 REMARK 465 PRO A 507 REMARK 465 ASN A 508 REMARK 465 PHE A 509 REMARK 465 ALA A 510 REMARK 465 ALA A 511 REMARK 465 TYR A 512 REMARK 465 LYS A 565 REMARK 465 ALA A 566 REMARK 465 GLN A 567 REMARK 465 ASN A 568 REMARK 465 ARG A 569 REMARK 465 GLU A 570 REMARK 465 PRO A 571 REMARK 465 ASN A 579 REMARK 465 ARG A 580 REMARK 465 PRO A 581 REMARK 465 LYS A 582 REMARK 465 ARG A 583 REMARK 465 PRO A 584 REMARK 465 GLY A 585 REMARK 465 VAL A 586 REMARK 465 ALA A 595 REMARK 465 ALA A 596 REMARK 465 LYS A 597 REMARK 465 ARG A 598 REMARK 465 GLY B 353 REMARK 465 ALA B 354 REMARK 465 LEU B 355 REMARK 465 PRO B 356 REMARK 465 SER B 357 REMARK 465 HIS B 358 REMARK 465 ASN B 359 REMARK 465 THR B 482 REMARK 465 ASP B 483 REMARK 465 GLU B 484 REMARK 465 ASP B 485 REMARK 465 THR B 486 REMARK 465 PRO B 487 REMARK 465 THR B 488 REMARK 465 ALA B 489 REMARK 465 ILE B 490 REMARK 465 ALA B 491 REMARK 465 ARG B 492 REMARK 465 ARG B 493 REMARK 465 ASN B 494 REMARK 465 MET B 495 REMARK 465 THR B 496 REMARK 465 MET B 497 REMARK 465 ASP B 498 REMARK 465 PRO B 499 REMARK 465 ASN B 500 REMARK 465 HIS B 501 REMARK 465 VAL B 502 REMARK 465 PRO B 503 REMARK 465 GLY B 504 REMARK 465 SER B 505 REMARK 465 GLU B 506 REMARK 465 PRO B 507 REMARK 465 ASN B 508 REMARK 465 PHE B 509 REMARK 465 ALA B 510 REMARK 465 ALA B 511 REMARK 465 TYR B 512 REMARK 465 LYS B 565 REMARK 465 ALA B 566 REMARK 465 GLN B 567 REMARK 465 ASN B 568 REMARK 465 ARG B 569 REMARK 465 GLU B 570 REMARK 465 PRO B 571 REMARK 465 ASN B 579 REMARK 465 ARG B 580 REMARK 465 PRO B 581 REMARK 465 LYS B 582 REMARK 465 ARG B 583 REMARK 465 PRO B 584 REMARK 465 GLY B 585 REMARK 465 VAL B 586 REMARK 465 ALA B 595 REMARK 465 ALA B 596 REMARK 465 LYS B 597 REMARK 465 ARG B 598 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC C 1 C5' DC C 1 C4' 0.045 REMARK 500 DG C 3 O4' DG C 3 C1' 0.070 REMARK 500 DC C 4 N1 DC C 4 C2 -0.068 REMARK 500 DA C 7 P DA C 7 O5' -0.060 REMARK 500 DC C 8 P DC C 8 O5' -0.068 REMARK 500 DC C 8 N1 DC C 8 C2 -0.072 REMARK 500 DC C 12 P DC C 12 O5' -0.122 REMARK 500 DC C 14 O4' DC C 14 C4' -0.075 REMARK 500 DA C 15 C3' DA C 15 C2' -0.067 REMARK 500 DC C 16 C2' DC C 16 C1' -0.065 REMARK 500 DG C 19 C5 DG C 19 N7 0.037 REMARK 500 DT D 22 C5' DT D 22 C4' 0.048 REMARK 500 DT D 27 C4' DT D 27 C3' -0.062 REMARK 500 DG D 28 C4' DG D 28 C3' -0.066 REMARK 500 DT D 29 C5 DT D 29 C7 0.046 REMARK 500 DT D 29 O3' DG D 30 P -0.122 REMARK 500 DG D 30 P DG D 30 O5' -0.110 REMARK 500 DG D 30 O3' DG D 31 P -0.072 REMARK 500 DG D 31 C4 DG D 31 C5 -0.048 REMARK 500 DG D 32 P DG D 32 O5' 0.062 REMARK 500 DT D 33 N1 DT D 33 C2 -0.055 REMARK 500 DG D 34 O4' DG D 34 C1' 0.082 REMARK 500 DG D 36 C8 DG D 36 N9 0.044 REMARK 500 DG D 38 C5' DG D 38 C4' 0.058 REMARK 500 DC E 2 P DC E 2 O5' 0.065 REMARK 500 DA E 7 C5' DA E 7 C4' -0.087 REMARK 500 DC E 8 N1 DC E 8 C6 -0.041 REMARK 500 DC E 9 P DC E 9 O5' -0.060 REMARK 500 DA E 11 N3 DA E 11 C4 0.043 REMARK 500 DA E 11 N9 DA E 11 C4 0.037 REMARK 500 DC E 12 N1 DC E 12 C6 -0.047 REMARK 500 DA E 13 O3' DC E 14 P -0.112 REMARK 500 DC E 14 N1 DC E 14 C6 0.042 REMARK 500 DA E 15 P DA E 15 O5' -0.078 REMARK 500 DA E 15 C2' DA E 15 C1' -0.060 REMARK 500 DA E 15 O3' DA E 15 C3' -0.057 REMARK 500 DC E 16 N1 DC E 16 C6 0.037 REMARK 500 DC E 17 P DC E 17 O5' -0.064 REMARK 500 DA E 18 N9 DA E 18 C4 -0.039 REMARK 500 DC F 21 C5' DC F 21 C4' 0.046 REMARK 500 DT F 22 C5 DT F 22 C7 0.068 REMARK 500 DG F 24 C5 DG F 24 N7 0.040 REMARK 500 DG F 24 N9 DG F 24 C4 0.062 REMARK 500 DT F 27 C2' DT F 27 C1' -0.070 REMARK 500 DT F 29 O4' DT F 29 C1' 0.068 REMARK 500 DG F 38 P DG F 38 O5' 0.066 REMARK 500 DG F 38 C5' DG F 38 C4' 0.054 REMARK 500 DG F 38 C2' DG F 38 C1' 0.062 REMARK 500 DG F 38 O4' DG F 38 C1' 0.084 REMARK 500 DG F 38 N9 DG F 38 C4 0.048 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC C 2 C1' - O4' - C4' ANGL. DEV. = -8.4 DEGREES REMARK 500 DC C 2 O4' - C1' - N1 ANGL. DEV. = 3.8 DEGREES REMARK 500 DC C 2 C6 - N1 - C2 ANGL. DEV. = 2.8 DEGREES REMARK 500 DC C 2 N1 - C2 - O2 ANGL. DEV. = 6.7 DEGREES REMARK 500 DG C 3 O4' - C1' - C2' ANGL. DEV. = -6.5 DEGREES REMARK 500 DC C 4 O4' - C1' - C2' ANGL. DEV. = -5.1 DEGREES REMARK 500 DC C 4 O4' - C1' - N1 ANGL. DEV. = -4.4 DEGREES REMARK 500 DC C 4 C2 - N3 - C4 ANGL. DEV. = 4.4 DEGREES REMARK 500 DC C 4 N3 - C4 - C5 ANGL. DEV. = -2.5 DEGREES REMARK 500 DC C 4 N3 - C4 - N4 ANGL. DEV. = 5.3 DEGREES REMARK 500 DA C 5 O4' - C1' - C2' ANGL. DEV. = -9.2 DEGREES REMARK 500 DA C 5 C5 - C6 - N6 ANGL. DEV. = -5.4 DEGREES REMARK 500 DA C 5 C3' - O3' - P ANGL. DEV. = 9.1 DEGREES REMARK 500 DC C 6 C1' - O4' - C4' ANGL. DEV. = -10.2 DEGREES REMARK 500 DC C 6 O4' - C1' - N1 ANGL. DEV. = 5.0 DEGREES REMARK 500 DC C 6 C6 - N1 - C2 ANGL. DEV. = 2.8 DEGREES REMARK 500 DC C 6 N1 - C2 - O2 ANGL. DEV. = 6.0 DEGREES REMARK 500 DC C 6 C3' - O3' - P ANGL. DEV. = 7.3 DEGREES REMARK 500 DA C 7 C1' - O4' - C4' ANGL. DEV. = 5.0 DEGREES REMARK 500 DA C 7 O4' - C1' - C2' ANGL. DEV. = -10.5 DEGREES REMARK 500 DA C 7 C4 - C5 - C6 ANGL. DEV. = 3.2 DEGREES REMARK 500 DC C 8 O4' - C1' - C2' ANGL. DEV. = -9.2 DEGREES REMARK 500 DC C 8 N1 - C2 - O2 ANGL. DEV. = 4.9 DEGREES REMARK 500 DC C 8 N3 - C4 - N4 ANGL. DEV. = 4.6 DEGREES REMARK 500 DC C 8 C3' - O3' - P ANGL. DEV. = 8.8 DEGREES REMARK 500 DC C 9 O4' - C1' - C2' ANGL. DEV. = -8.1 DEGREES REMARK 500 DC C 9 N1 - C2 - O2 ANGL. DEV. = 4.1 DEGREES REMARK 500 DC C 9 N3 - C4 - N4 ANGL. DEV. = 5.3 DEGREES REMARK 500 DC C 9 C5 - C4 - N4 ANGL. DEV. = -4.8 DEGREES REMARK 500 DC C 10 C3' - C2' - C1' ANGL. DEV. = -6.8 DEGREES REMARK 500 DC C 10 O4' - C1' - C2' ANGL. DEV. = 4.2 DEGREES REMARK 500 DC C 10 C6 - N1 - C2 ANGL. DEV. = 3.3 DEGREES REMARK 500 DC C 10 N1 - C2 - N3 ANGL. DEV. = -4.4 DEGREES REMARK 500 DC C 10 N1 - C2 - O2 ANGL. DEV. = 4.1 DEGREES REMARK 500 DA C 11 O4' - C1' - N9 ANGL. DEV. = 3.3 DEGREES REMARK 500 DA C 11 C3' - O3' - P ANGL. DEV. = 10.0 DEGREES REMARK 500 DC C 12 O4' - C1' - C2' ANGL. DEV. = -8.5 DEGREES REMARK 500 DC C 12 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 DC C 12 N3 - C4 - C5 ANGL. DEV. = -2.4 DEGREES REMARK 500 DC C 12 N1 - C2 - O2 ANGL. DEV. = 4.2 DEGREES REMARK 500 DA C 13 O4' - C1' - C2' ANGL. DEV. = -5.1 DEGREES REMARK 500 DA C 13 O4' - C1' - N9 ANGL. DEV. = -4.9 DEGREES REMARK 500 DC C 14 C1' - O4' - C4' ANGL. DEV. = -7.0 DEGREES REMARK 500 DC C 14 O4' - C1' - C2' ANGL. DEV. = -9.2 DEGREES REMARK 500 DC C 14 O4' - C1' - N1 ANGL. DEV. = 3.2 DEGREES REMARK 500 DC C 14 N1 - C2 - N3 ANGL. DEV. = -5.0 DEGREES REMARK 500 DC C 14 C2 - N3 - C4 ANGL. DEV. = 6.0 DEGREES REMARK 500 DC C 14 N3 - C4 - C5 ANGL. DEV. = -2.5 DEGREES REMARK 500 DC C 14 N1 - C2 - O2 ANGL. DEV. = 8.1 DEGREES REMARK 500 DC C 14 C3' - O3' - P ANGL. DEV. = 13.2 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 234 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 378 46.57 -144.46 REMARK 500 GLU A 416 -41.92 69.79 REMARK 500 SER A 444 -168.77 -77.46 REMARK 500 GLN A 515 -176.01 -172.82 REMARK 500 SER A 516 40.07 -173.66 REMARK 500 ALA A 534 22.01 -75.32 REMARK 500 ALA A 563 17.88 -67.64 REMARK 500 GLU B 416 -43.01 68.90 REMARK 500 ASP B 430 -159.11 -87.12 REMARK 500 SER B 444 -150.59 -83.04 REMARK 500 SER B 516 52.03 -159.98 REMARK 500 ALA B 522 159.65 -48.09 REMARK 500 ASN B 576 75.15 33.30 REMARK 500 REMARK 500 REMARK: NULL DBREF 1IGN A 353 598 UNP P11938 RAP1_YEAST 353 598 DBREF 1IGN B 353 598 UNP P11938 RAP1_YEAST 353 598 DBREF 1IGN C 1 19 PDB 1IGN 1IGN 1 19 DBREF 1IGN D 20 38 PDB 1IGN 1IGN 20 38 DBREF 1IGN E 1 19 PDB 1IGN 1IGN 1 19 DBREF 1IGN F 20 38 PDB 1IGN 1IGN 20 38 SEQRES 1 C 19 DC DC DG DC DA DC DA DC DC DC DA DC DA SEQRES 2 C 19 DC DA DC DC DA DG SEQRES 1 D 19 DC DC DT DG DG DT DG DT DG DT DG DG DG SEQRES 2 D 19 DT DG DT DG DC DG SEQRES 1 E 19 DC DC DG DC DA DC DA DC DC DC DA DC DA SEQRES 2 E 19 DC DA DC DC DA DG SEQRES 1 F 19 DC DC DT DG DG DT DG DT DG DT DG DG DG SEQRES 2 F 19 DT DG DT DG DC DG SEQRES 1 A 246 GLY ALA LEU PRO SER HIS ASN LYS ALA SER PHE THR ASP SEQRES 2 A 246 GLU GLU ASP GLU PHE ILE LEU ASP VAL VAL ARG LYS ASN SEQRES 3 A 246 PRO THR ARG ARG THR THR HIS THR LEU TYR ASP GLU ILE SEQRES 4 A 246 SER HIS TYR VAL PRO ASN HIS THR GLY ASN SER ILE ARG SEQRES 5 A 246 HIS ARG PHE ARG VAL TYR LEU SER LYS ARG LEU GLU TYR SEQRES 6 A 246 VAL TYR GLU VAL ASP LYS PHE GLY LYS LEU VAL ARG ASP SEQRES 7 A 246 ASP ASP GLY ASN LEU ILE LYS THR LYS VAL LEU PRO PRO SEQRES 8 A 246 SER ILE LYS ARG LYS PHE SER ALA ASP GLU ASP TYR THR SEQRES 9 A 246 LEU ALA ILE ALA VAL LYS LYS GLN PHE TYR ARG ASP LEU SEQRES 10 A 246 PHE GLN ILE ASP PRO ASP THR GLY ARG SER LEU ILE THR SEQRES 11 A 246 ASP GLU ASP THR PRO THR ALA ILE ALA ARG ARG ASN MET SEQRES 12 A 246 THR MET ASP PRO ASN HIS VAL PRO GLY SER GLU PRO ASN SEQRES 13 A 246 PHE ALA ALA TYR ARG THR GLN SER ARG ARG GLY PRO ILE SEQRES 14 A 246 ALA ARG GLU PHE PHE LYS HIS PHE ALA GLU GLU HIS ALA SEQRES 15 A 246 ALA HIS THR GLU ASN ALA TRP ARG ASP ARG PHE ARG LYS SEQRES 16 A 246 PHE LEU LEU ALA TYR GLY ILE ASP ASP TYR ILE SER TYR SEQRES 17 A 246 TYR GLU ALA GLU LYS ALA GLN ASN ARG GLU PRO GLU PRO SEQRES 18 A 246 MET LYS ASN LEU THR ASN ARG PRO LYS ARG PRO GLY VAL SEQRES 19 A 246 PRO THR PRO GLY ASN TYR ASN SER ALA ALA LYS ARG SEQRES 1 B 246 GLY ALA LEU PRO SER HIS ASN LYS ALA SER PHE THR ASP SEQRES 2 B 246 GLU GLU ASP GLU PHE ILE LEU ASP VAL VAL ARG LYS ASN SEQRES 3 B 246 PRO THR ARG ARG THR THR HIS THR LEU TYR ASP GLU ILE SEQRES 4 B 246 SER HIS TYR VAL PRO ASN HIS THR GLY ASN SER ILE ARG SEQRES 5 B 246 HIS ARG PHE ARG VAL TYR LEU SER LYS ARG LEU GLU TYR SEQRES 6 B 246 VAL TYR GLU VAL ASP LYS PHE GLY LYS LEU VAL ARG ASP SEQRES 7 B 246 ASP ASP GLY ASN LEU ILE LYS THR LYS VAL LEU PRO PRO SEQRES 8 B 246 SER ILE LYS ARG LYS PHE SER ALA ASP GLU ASP TYR THR SEQRES 9 B 246 LEU ALA ILE ALA VAL LYS LYS GLN PHE TYR ARG ASP LEU SEQRES 10 B 246 PHE GLN ILE ASP PRO ASP THR GLY ARG SER LEU ILE THR SEQRES 11 B 246 ASP GLU ASP THR PRO THR ALA ILE ALA ARG ARG ASN MET SEQRES 12 B 246 THR MET ASP PRO ASN HIS VAL PRO GLY SER GLU PRO ASN SEQRES 13 B 246 PHE ALA ALA TYR ARG THR GLN SER ARG ARG GLY PRO ILE SEQRES 14 B 246 ALA ARG GLU PHE PHE LYS HIS PHE ALA GLU GLU HIS ALA SEQRES 15 B 246 ALA HIS THR GLU ASN ALA TRP ARG ASP ARG PHE ARG LYS SEQRES 16 B 246 PHE LEU LEU ALA TYR GLY ILE ASP ASP TYR ILE SER TYR SEQRES 17 B 246 TYR GLU ALA GLU LYS ALA GLN ASN ARG GLU PRO GLU PRO SEQRES 18 B 246 MET LYS ASN LEU THR ASN ARG PRO LYS ARG PRO GLY VAL SEQRES 19 B 246 PRO THR PRO GLY ASN TYR ASN SER ALA ALA LYS ARG FORMUL 7 HOH *206(H2 O) HELIX 1 1 ASP A 365 ARG A 376 1 12 HELIX 2 2 THR A 386 ILE A 391 1 6 HELIX 3 3 GLY A 400 VAL A 409 1 10 HELIX 4 4 ALA A 451 PHE A 470 1 20 HELIX 5 5 PHE A 525 GLU A 532 1 8 HELIX 6 6 GLU A 538 TYR A 552 1 15 HELIX 7 7 ILE A 554 GLU A 562 1 9 HELIX 8 8 ASP B 365 ARG B 376 1 12 HELIX 9 9 THR B 386 ILE B 391 1 6 HELIX 10 10 GLY B 400 VAL B 409 1 10 HELIX 11 11 ALA B 451 PHE B 470 1 20 HELIX 12 12 PHE B 525 GLU B 532 1 8 HELIX 13 13 GLU B 538 TYR B 552 1 15 HELIX 14 14 ILE B 554 GLU B 562 1 9 SHEET 1 A 2 VAL A 418 TYR A 419 0 SHEET 2 A 2 LYS A 437 THR A 438 -1 O THR A 438 N VAL A 418 SHEET 1 B 2 VAL B 418 TYR B 419 0 SHEET 2 B 2 LYS B 437 THR B 438 -1 N THR B 438 O VAL B 418 CISPEP 1 GLY A 519 PRO A 520 0 0.84 CISPEP 2 GLY B 519 PRO B 520 0 0.35 CRYST1 90.610 90.610 80.360 90.00 90.00 120.00 P 31 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011036 0.006372 0.000000 0.00000 SCALE2 0.000000 0.012744 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012444 0.00000 MTRIX1 1 0.570000 0.821600 -0.005400 -42.46000 1 MTRIX2 1 0.821700 -0.570000 0.006700 81.58000 1 MTRIX3 1 0.002400 -0.008200 -1.000000 80.71000 1