HEADER HYDROLASE 27-APR-01 1IJP TITLE SOLUTION STRUCTURE OF ALA20PRO/PRO64ALA SUBSTITUTED SUBUNIT C OF TITLE 2 ESCHERICHIA COLI ATP SYNTHASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATP SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SUBUNIT C; COMPND 5 EC: 3.6.1.34; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: UNCE; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: JH613; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PBR322 KEYWDS TRANSMEMBRANE HELIX, HYDROLASE EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR O.Y.DMITRIEV,R.H.FILLINGAME REVDAT 4 27-OCT-21 1IJP 1 REMARK SEQADV REVDAT 3 24-FEB-09 1IJP 1 VERSN REVDAT 2 01-APR-03 1IJP 1 JRNL REVDAT 1 27-MAR-02 1IJP 0 JRNL AUTH O.Y.DMITRIEV,R.H.FILLINGAME JRNL TITL STRUCTURE OF ALA(20) --> PRO/PRO(64) --> ALA SUBSTITUTED JRNL TITL 2 SUBUNIT C OF ESCHERICHIA COLI ATP SYNTHASE IN WHICH THE JRNL TITL 3 ESSENTIAL PROLINE IS SWITCHED BETWEEN TRANSMEMBRANE HELICES. JRNL REF J.BIOL.CHEM. V. 276 27449 2001 JRNL REFN ISSN 0021-9258 JRNL PMID 11331283 JRNL DOI 10.1074/JBC.M100762200 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR, DISCOVER 3.0 REMARK 3 AUTHORS : MOLECULAR SIMULATIONS INC. (DISCOVER) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1IJP COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-MAY-01. REMARK 100 THE DEPOSITION ID IS D_1000013341. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300 REMARK 210 PH : 5.0 REMARK 210 IONIC STRENGTH : 50 MM NACL REMARK 210 PRESSURE : ATMOSPHERIC ATM REMARK 210 SAMPLE CONTENTS : 2.2 MM SUBUNIT C, 50 MM NACL, PH REMARK 210 5.0 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : DQF-COSY; 2D TOCSY; 3D_15N REMARK 210 -SEPARATED TOCSY; 2D NOESY; 3D_ REMARK 210 15N-SEPARATED_NOESY; HNHA REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : FELIX 95.0, DYANA 1.5 REMARK 210 METHOD USED : SIMULATED ANNEALING, TORSION REMARK 210 ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 1 GLU A 2 CD GLU A 2 OE2 0.115 REMARK 500 1 GLU A 37 CD GLU A 37 OE2 0.115 REMARK 500 2 GLU A 2 CD GLU A 2 OE2 0.116 REMARK 500 2 GLU A 37 CD GLU A 37 OE2 0.114 REMARK 500 3 GLU A 2 CD GLU A 2 OE2 0.115 REMARK 500 3 GLU A 37 CD GLU A 37 OE2 0.115 REMARK 500 4 GLU A 2 CD GLU A 2 OE2 0.116 REMARK 500 4 GLU A 37 CD GLU A 37 OE2 0.114 REMARK 500 5 GLU A 2 CD GLU A 2 OE2 0.115 REMARK 500 5 GLU A 37 CD GLU A 37 OE2 0.115 REMARK 500 6 GLU A 2 CD GLU A 2 OE2 0.115 REMARK 500 6 GLU A 37 CD GLU A 37 OE2 0.115 REMARK 500 7 GLU A 2 CD GLU A 2 OE2 0.115 REMARK 500 7 GLU A 37 CD GLU A 37 OE2 0.115 REMARK 500 8 GLU A 2 CD GLU A 2 OE2 0.114 REMARK 500 8 GLU A 37 CD GLU A 37 OE2 0.115 REMARK 500 9 GLU A 2 CD GLU A 2 OE2 0.115 REMARK 500 9 GLU A 37 CD GLU A 37 OE2 0.115 REMARK 500 10 GLU A 2 CD GLU A 2 OE2 0.116 REMARK 500 10 GLU A 37 CD GLU A 37 OE2 0.114 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ASP A 7 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 1 ARG A 41 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 1 ASP A 44 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 1 ARG A 50 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 1 ASP A 61 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 1 ASP A 61 CB - CG - OD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 2 ASP A 7 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 2 ASP A 7 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 2 ARG A 41 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 2 ASP A 44 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 2 ARG A 50 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 2 ASP A 61 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 2 ASP A 61 CB - CG - OD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 3 ASP A 7 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 3 ARG A 41 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 3 ASP A 44 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 3 ASP A 44 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 3 ARG A 50 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 3 ASP A 61 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 4 ASP A 7 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 4 ARG A 41 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 4 ASP A 44 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 4 ARG A 50 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 4 ASP A 61 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 5 ASP A 7 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 5 ASP A 7 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 5 ARG A 41 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 5 ASP A 44 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 5 ARG A 50 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 5 ASP A 61 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 6 ASP A 7 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 6 ASP A 7 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 6 ARG A 41 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 6 ASP A 44 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 6 ARG A 50 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 6 ASP A 61 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 6 ASP A 61 CB - CG - OD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 7 ASP A 7 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 7 TYR A 10 CB - CG - CD2 ANGL. DEV. = -4.0 DEGREES REMARK 500 7 ARG A 41 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 7 ASP A 44 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 7 ARG A 50 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 7 ASP A 61 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 8 ASP A 7 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 8 ASP A 7 CB - CG - OD2 ANGL. DEV. = -6.5 DEGREES REMARK 500 8 ARG A 41 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 8 ASP A 44 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 8 ARG A 50 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 8 ASP A 61 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 8 ASP A 61 CB - CG - OD2 ANGL. DEV. = -6.3 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 66 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 2 -78.94 -97.93 REMARK 500 1 ASP A 44 62.56 -119.39 REMARK 500 2 GLU A 2 80.98 65.91 REMARK 500 2 ILE A 28 -73.58 -44.22 REMARK 500 2 LEU A 59 -2.83 -58.50 REMARK 500 2 ALA A 62 -73.15 -49.90 REMARK 500 3 GLU A 2 -66.31 -108.47 REMARK 500 4 GLU A 2 -76.41 -97.31 REMARK 500 4 ILE A 28 -70.28 -54.65 REMARK 500 4 ASP A 44 60.93 -119.28 REMARK 500 4 LEU A 59 -8.20 -55.76 REMARK 500 4 ALA A 62 -71.20 -48.03 REMARK 500 4 ALA A 77 86.22 71.23 REMARK 500 4 VAL A 78 -62.29 73.72 REMARK 500 5 GLU A 2 -74.38 -128.62 REMARK 500 5 ASN A 3 -49.43 -149.42 REMARK 500 5 LEU A 59 -14.34 -49.52 REMARK 500 6 ILE A 28 -73.76 -47.66 REMARK 500 6 LEU A 59 -17.28 -46.53 REMARK 500 6 ALA A 62 -82.65 -58.16 REMARK 500 7 GLU A 2 -75.28 -98.56 REMARK 500 7 LEU A 59 -2.63 -57.72 REMARK 500 7 ALA A 62 -74.88 -50.19 REMARK 500 8 GLU A 2 -74.57 -116.59 REMARK 500 8 ASN A 3 -65.42 -145.11 REMARK 500 8 ASP A 44 31.62 -97.62 REMARK 500 8 LEU A 59 -4.44 -57.58 REMARK 500 8 ALA A 77 78.82 64.09 REMARK 500 8 VAL A 78 -35.58 73.60 REMARK 500 9 GLU A 2 -76.27 -93.02 REMARK 500 9 LEU A 59 -19.63 -48.86 REMARK 500 9 VAL A 78 74.31 40.57 REMARK 500 10 GLU A 2 70.26 62.69 REMARK 500 10 TYR A 10 -73.72 -37.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 31 GLY A 32 1 147.88 REMARK 500 VAL A 60 ASP A 61 4 148.35 REMARK 500 VAL A 60 ASP A 61 7 148.83 REMARK 500 VAL A 60 ASP A 61 8 148.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1A91 RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE WILD TYPE SUBUNIT C OF E.COLI ATP REMARK 900 SYNTHASE AT PH 5.0 REMARK 900 RELATED ID: 1C0V RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE WILD TYPE SUBUNIT C OF E.COLI ATP REMARK 900 SYNTHASE AT PH 5.0, A MORE RECENT REFINEMENT REMARK 900 RELATED ID: 1C99 RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE WILD TYPE SUBUNIT C OF E.COLI ATP REMARK 900 SYNTHASE AT PH 8.0 DBREF 1IJP A 1 79 UNP P68699 ATPL_ECOLI 1 79 SEQADV 1IJP PRO A 20 UNP P68699 ALA 20 ENGINEERED MUTATION SEQADV 1IJP ALA A 64 UNP P68699 PRO 64 ENGINEERED MUTATION SEQRES 1 A 79 MET GLU ASN LEU ASN MET ASP LEU LEU TYR MET ALA ALA SEQRES 2 A 79 ALA VAL MET MET GLY LEU PRO ALA ILE GLY ALA ALA ILE SEQRES 3 A 79 GLY ILE GLY ILE LEU GLY GLY LYS PHE LEU GLU GLY ALA SEQRES 4 A 79 ALA ARG GLN PRO ASP LEU ILE PRO LEU LEU ARG THR GLN SEQRES 5 A 79 PHE PHE ILE VAL MET GLY LEU VAL ASP ALA ILE ALA MET SEQRES 6 A 79 ILE ALA VAL GLY LEU GLY LEU TYR VAL MET PHE ALA VAL SEQRES 7 A 79 ALA HELIX 1 1 GLU A 2 LEU A 19 1 18 HELIX 2 2 ILE A 22 GLN A 42 1 21 HELIX 3 3 LEU A 45 VAL A 78 1 34 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1