HEADER AMINOACYL-TRNA SYNTHETASE 24-FEB-98 1ILE TITLE ISOLEUCYL-TRNA SYNTHETASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOLEUCYL-TRNA SYNTHETASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ILERS; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 300852; SOURCE 4 STRAIN: HB8; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PK7 KEYWDS AMINOACYL-TRNA SYNTHETASE, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 2 INITIATIVE, RSGI, STRUCTURAL GENOMICS EXPDTA X-RAY DIFFRACTION AUTHOR O.NUREKI,D.G.VASSYLYEV,M.TATENO,A.SHIMADA,T.NAKAMA,S.FUKAI,M.KONNO, AUTHOR 2 P.SCHIMMEL,S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS AUTHOR 3 INITIATIVE (RSGI) REVDAT 4 30-OCT-24 1ILE 1 REMARK LINK REVDAT 3 13-JUL-11 1ILE 1 VERSN REVDAT 2 24-FEB-09 1ILE 1 VERSN REVDAT 1 13-APR-99 1ILE 0 JRNL AUTH O.NUREKI,D.G.VASSYLYEV,M.TATENO,A.SHIMADA,T.NAKAMA,S.FUKAI, JRNL AUTH 2 M.KONNO,T.L.HENDRICKSON,P.SCHIMMEL,S.YOKOYAMA JRNL TITL ENZYME STRUCTURE WITH TWO CATALYTIC SITES FOR DOUBLE-SIEVE JRNL TITL 2 SELECTION OF SUBSTRATE. JRNL REF SCIENCE V. 280 578 1998 JRNL REFN ISSN 0036-8075 JRNL PMID 9554847 JRNL DOI 10.1126/SCIENCE.280.5363.578 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.8 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 46804 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.298 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6698 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 322 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.017 REMARK 3 BOND ANGLES (DEGREES) : 2.250 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : 1.650 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1ILE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000174180. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : MAY-97 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 30 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48290 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 15.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.100 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.0 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : 0.10200 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.1400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 76.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: X-PLOR 3.8 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 80.55000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.40000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 80.55000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 47.40000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS A 461 SG CYS A 502 1.14 REMARK 500 SG CYS A 464 SG CYS A 502 1.15 REMARK 500 SG CYS A 464 SG CYS A 504 1.16 REMARK 500 SG CYS A 181 SG CYS A 389 1.38 REMARK 500 SG CYS A 184 SG CYS A 392 1.66 REMARK 500 SG CYS A 461 SG CYS A 504 1.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 392 CB CYS A 392 SG 0.114 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 89 CA - CB - CG ANGL. DEV. = 14.4 DEGREES REMARK 500 CYS A 181 CA - CB - SG ANGL. DEV. = 10.4 DEGREES REMARK 500 CYS A 389 CA - CB - SG ANGL. DEV. = 16.7 DEGREES REMARK 500 CYS A 392 CA - CB - SG ANGL. DEV. = 12.9 DEGREES REMARK 500 PRO A 426 C - N - CA ANGL. DEV. = -11.1 DEGREES REMARK 500 CYS A 502 CA - CB - SG ANGL. DEV. = 12.4 DEGREES REMARK 500 CYS A 504 CA - CB - SG ANGL. DEV. = 9.8 DEGREES REMARK 500 VAL A 578 CB - CA - C ANGL. DEV. = -12.4 DEGREES REMARK 500 ASP A 714 N - CA - C ANGL. DEV. = -16.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 9 70.52 -103.86 REMARK 500 GLU A 24 50.00 -98.25 REMARK 500 LYS A 25 51.30 15.87 REMARK 500 ALA A 49 49.54 -80.33 REMARK 500 PRO A 53 155.01 -41.44 REMARK 500 LEU A 99 1.73 -61.74 REMARK 500 SER A 122 -31.70 -35.94 REMARK 500 GLU A 131 24.82 -73.41 REMARK 500 PRO A 235 -4.45 -59.03 REMARK 500 LEU A 276 -111.00 -81.25 REMARK 500 GLU A 285 -135.95 8.78 REMARK 500 PRO A 294 117.67 -36.26 REMARK 500 ALA A 296 98.24 -63.80 REMARK 500 PRO A 322 -4.52 -56.34 REMARK 500 GLU A 352 -55.51 -26.31 REMARK 500 LYS A 355 109.08 -55.34 REMARK 500 ARG A 391 -76.81 -121.34 REMARK 500 LYS A 407 57.53 -66.82 REMARK 500 HIS A 428 22.75 -64.29 REMARK 500 ARG A 433 -38.03 -33.08 REMARK 500 ALA A 445 99.58 -69.77 REMARK 500 PRO A 457 26.09 -66.58 REMARK 500 ALA A 463 -39.57 -141.52 REMARK 500 CYS A 464 -140.37 -68.86 REMARK 500 LYS A 466 -159.17 -151.00 REMARK 500 GLU A 467 131.14 -4.88 REMARK 500 ARG A 492 -66.66 -18.20 REMARK 500 TYR A 513 156.73 -16.20 REMARK 500 HIS A 530 41.21 -91.78 REMARK 500 TYR A 531 -86.65 0.50 REMARK 500 GLU A 534 -110.48 -126.02 REMARK 500 HIS A 535 66.52 -55.46 REMARK 500 PHE A 543 -91.10 -58.01 REMARK 500 LYS A 588 97.61 -160.06 REMARK 500 LYS A 591 94.72 -51.39 REMARK 500 MET A 592 114.86 -36.01 REMARK 500 PHE A 609 -28.42 -145.06 REMARK 500 ALA A 626 163.58 -45.82 REMARK 500 PHE A 652 -71.74 -47.50 REMARK 500 LEU A 659 -69.82 -131.36 REMARK 500 ASP A 660 -5.53 -59.02 REMARK 500 ARG A 661 78.05 31.47 REMARK 500 PRO A 674 -160.99 -51.96 REMARK 500 GLU A 675 -78.37 -80.08 REMARK 500 VAL A 712 50.25 -104.52 REMARK 500 GLU A 713 -8.77 -173.25 REMARK 500 ASP A 714 -72.39 -95.53 REMARK 500 SER A 716 -175.14 62.22 REMARK 500 GLN A 717 -79.91 47.05 REMARK 500 TRP A 718 -106.24 -108.64 REMARK 500 REMARK 500 THIS ENTRY HAS 67 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 335 0.07 SIDE CHAIN REMARK 500 TYR A 399 0.07 SIDE CHAIN REMARK 500 TYR A 531 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 181 SG REMARK 620 2 CYS A 184 SG 61.4 REMARK 620 3 CYS A 389 SG 42.2 90.8 REMARK 620 4 CYS A 392 SG 62.5 65.4 45.6 REMARK 620 5 HOH A1327 O 120.5 160.4 102.4 134.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1102 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 461 SG REMARK 620 2 CYS A 464 SG 29.5 REMARK 620 3 CYS A 502 SG 36.3 41.5 REMARK 620 4 CYS A 504 CB 110.5 83.0 89.6 REMARK 620 5 CYS A 504 SG 61.9 42.2 38.8 51.8 REMARK 620 6 HOH A1179 O 110.7 127.3 139.5 130.7 168.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1102 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: TTK003000883.1 RELATED DB: TARGETDB DBREF 1ILE A 1 821 UNP P56690 SYI_THET8 1 821 SEQRES 1 A 821 MET PHE LYS GLU VAL GLY GLU PRO ASN PHE PRO LYS LEU SEQRES 2 A 821 GLU GLU GLU VAL LEU ALA PHE TRP LYS ARG GLU LYS ILE SEQRES 3 A 821 PHE GLN LYS SER VAL GLU ASN ARG LYS GLY GLY PRO ARG SEQRES 4 A 821 TYR THR VAL TYR GLU GLY PRO PRO THR ALA ASN GLY LEU SEQRES 5 A 821 PRO HIS VAL GLY HIS ALA GLN ALA ARG SER TYR LYS ASP SEQRES 6 A 821 LEU PHE PRO ARG TYR LYS THR MET ARG GLY TYR TYR ALA SEQRES 7 A 821 PRO ARG ARG ALA GLY TRP ASP THR HIS GLY LEU PRO VAL SEQRES 8 A 821 GLU LEU GLU VAL GLU LYS LYS LEU GLY LEU LYS SER LYS SEQRES 9 A 821 ARG GLU ILE GLU ALA TYR GLY ILE GLU ARG PHE ASN GLN SEQRES 10 A 821 ALA CYS ARG GLU SER VAL PHE THR TYR GLU LYS GLU TRP SEQRES 11 A 821 GLU ALA PHE THR GLU ARG ILE ALA TYR TRP VAL ASP LEU SEQRES 12 A 821 GLU ASP ALA TYR ALA THR LEU GLU PRO THR TYR ILE GLU SEQRES 13 A 821 SER ILE TRP TRP SER LEU LYS ASN LEU PHE ASP ARG GLY SEQRES 14 A 821 LEU LEU TYR ARG ASP HIS LYS VAL VAL PRO TYR CYS PRO SEQRES 15 A 821 ARG CYS GLY THR PRO LEU SER SER HIS GLU VAL ALA LEU SEQRES 16 A 821 GLY TYR LYS GLU ILE GLN ASP PRO SER VAL TYR VAL ARG SEQRES 17 A 821 PHE PRO LEU LYS GLU PRO LYS LYS LEU GLY LEU GLU LYS SEQRES 18 A 821 ALA SER LEU LEU ILE TRP THR THR THR PRO TRP THR LEU SEQRES 19 A 821 PRO GLY ASN VAL ALA ALA ALA VAL HIS PRO GLU TYR THR SEQRES 20 A 821 TYR ALA ALA PHE GLN VAL GLY ASP GLU ALA LEU ILE LEU SEQRES 21 A 821 GLU GLU GLY LEU GLY ARG LYS LEU LEU GLY GLU GLY THR SEQRES 22 A 821 GLN VAL LEU LYS THR PHE PRO GLY LYS ALA LEU GLU GLY SEQRES 23 A 821 LEU PRO TYR THR PRO PRO TYR PRO GLN ALA LEU GLU LYS SEQRES 24 A 821 GLY TYR PHE VAL VAL LEU ALA ASP TYR VAL SER GLN GLU SEQRES 25 A 821 ASP GLY THR GLY ILE VAL HIS GLN ALA PRO ALA PHE GLY SEQRES 26 A 821 ALA GLU ASP LEU GLU THR ALA ARG VAL TYR GLY LEU PRO SEQRES 27 A 821 LEU LEU LYS THR VAL ASP GLU GLU GLY LYS LEU LEU VAL SEQRES 28 A 821 GLU PRO PHE LYS GLY LEU TYR PHE ARG GLU ALA ASN ARG SEQRES 29 A 821 ALA ILE LEU ARG ASP LEU ARG GLY ARG GLY LEU LEU PHE SEQRES 30 A 821 LYS GLU GLU SER TYR LEU HIS SER TYR PRO HIS CYS TRP SEQRES 31 A 821 ARG CYS SER THR PRO LEU MET TYR TYR ALA THR GLU SER SEQRES 32 A 821 TRP PHE ILE LYS ASN THR LEU PHE LYS ASP GLU LEU ILE SEQRES 33 A 821 ARG ASN ASN GLN GLU ILE HIS TRP VAL PRO PRO HIS ILE SEQRES 34 A 821 LYS GLU GLY ARG TYR GLY GLU TRP LEU LYS ASN LEU VAL SEQRES 35 A 821 ASP TRP ALA LEU SER ARG ASN ARG TYR TRP GLY THR PRO SEQRES 36 A 821 LEU PRO ILE TRP VAL CYS GLN ALA CYS GLY LYS GLU GLU SEQRES 37 A 821 ALA ILE GLY SER PHE GLN GLU LEU LYS ALA ARG ALA THR SEQRES 38 A 821 LYS PRO LEU PRO GLU PRO PHE ASP PRO HIS ARG PRO TYR SEQRES 39 A 821 VAL ASP GLN VAL GLU LEU ALA CYS ALA CYS GLY GLY THR SEQRES 40 A 821 MET ARG ARG VAL PRO TYR VAL ILE ASP VAL TRP TYR ASP SEQRES 41 A 821 SER GLY ALA MET PRO PHE ALA SER LEU HIS TYR PRO PHE SEQRES 42 A 821 GLU HIS GLU GLU VAL PHE ARG GLU SER PHE PRO ALA ASP SEQRES 43 A 821 PHE ILE ALA GLU GLY ILE ASP GLN THR ARG GLY TRP PHE SEQRES 44 A 821 ASN SER LEU HIS GLN LEU GLY VAL MET LEU PHE GLY SER SEQRES 45 A 821 ILE ALA PHE LYS ASN VAL ILE CYS HIS GLY LEU ILE LEU SEQRES 46 A 821 ASP GLU LYS GLY GLN LYS MET SER LYS SER LYS GLY ASN SEQRES 47 A 821 VAL VAL ASP PRO TRP ASP ILE ILE ARG LYS PHE GLY ALA SEQRES 48 A 821 ASP ALA LEU ARG TRP TYR ILE TYR VAL SER ALA PRO PRO SEQRES 49 A 821 GLU ALA ASP ARG ARG PHE GLY PRO ASN LEU VAL ARG GLU SEQRES 50 A 821 THR VAL ARG ASP TYR PHE LEU THR LEU TRP ASN VAL TYR SEQRES 51 A 821 SER PHE PHE VAL THR TYR ALA ASN LEU ASP ARG PRO ASP SEQRES 52 A 821 LEU LYS ASN PRO PRO PRO PRO GLU LYS ARG PRO GLU MET SEQRES 53 A 821 ASP ARG TRP LEU LEU ALA ARG MET GLN ASP LEU ILE GLN SEQRES 54 A 821 ARG VAL THR GLU ALA LEU GLU ALA TYR ASP PRO THR THR SEQRES 55 A 821 SER ALA ARG ALA LEU ARG ASP PHE VAL VAL GLU ASP LEU SEQRES 56 A 821 SER GLN TRP TYR VAL ARG ARG ASN ARG ARG ARG PHE TRP SEQRES 57 A 821 LYS ASN GLU ASP ALA LEU ASP ARG GLU ALA ALA TYR ALA SEQRES 58 A 821 THR LEU TYR GLU ALA LEU VAL LEU VAL ALA THR LEU ALA SEQRES 59 A 821 ALA PRO PHE THR PRO PHE LEU ALA GLU VAL LEU TRP GLN SEQRES 60 A 821 ASN LEU VAL ARG SER VAL ARG LEU GLU ALA LYS GLU SER SEQRES 61 A 821 VAL HIS LEU ALA ASP TRP PRO GLU ALA ASP PRO ALA LEU SEQRES 62 A 821 ALA ASP GLU ALA LEU VAL ALA GLN MET ARG ALA VAL LEU SEQRES 63 A 821 LYS VAL VAL ASP LEU ALA ARG ALA ALA ARG ALA LYS SER SEQRES 64 A 821 GLY VAL HET ZN A1101 1 HET ZN A1102 1 HETNAM ZN ZINC ION FORMUL 2 ZN 2(ZN 2+) FORMUL 4 HOH *322(H2 O) HELIX 1 1 PHE A 10 ARG A 23 1 14 HELIX 2 2 ILE A 26 ARG A 34 1 9 HELIX 3 3 HIS A 57 MET A 73 1 17 HELIX 4 4 GLY A 88 LYS A 98 1 11 HELIX 5 5 LYS A 104 TYR A 110 1 7 HELIX 6 6 ILE A 112 SER A 122 1 11 HELIX 7 7 GLU A 127 TRP A 130 1 4 HELIX 8 8 PHE A 133 ARG A 136 1 4 HELIX 9 9 PRO A 152 ASP A 167 1 16 HELIX 10 10 SER A 190 LEU A 195 1 6 HELIX 11 11 PRO A 214 LEU A 217 5 4 HELIX 12 12 PRO A 231 GLY A 236 1 6 HELIX 13 13 LEU A 264 LEU A 268 1 5 HELIX 14 14 GLY A 281 LEU A 284 1 4 HELIX 15 15 ALA A 326 VAL A 334 1 9 HELIX 16 16 GLU A 352 PHE A 354 5 3 HELIX 17 17 PHE A 359 GLY A 372 1 14 HELIX 18 18 ASN A 408 GLU A 421 5 14 HELIX 19 19 PRO A 427 ILE A 429 5 3 HELIX 20 20 GLY A 435 LYS A 439 1 5 HELIX 21 21 PHE A 473 ARG A 479 1 7 HELIX 22 22 ARG A 492 GLN A 497 1 6 HELIX 23 23 VAL A 517 ALA A 527 1 11 HELIX 24 24 GLU A 536 SER A 542 1 7 HELIX 25 25 ILE A 552 ARG A 556 5 5 HELIX 26 26 TRP A 558 PHE A 570 1 13 HELIX 27 27 PRO A 602 ILE A 606 1 5 HELIX 28 28 ALA A 611 SER A 621 1 11 HELIX 29 29 PRO A 632 ASP A 641 1 10 HELIX 30 30 PHE A 643 ASP A 660 1 18 HELIX 31 31 LEU A 664 ASN A 666 5 3 HELIX 32 32 GLU A 675 GLU A 696 1 22 HELIX 33 33 PRO A 700 ASP A 714 1 15 HELIX 34 34 VAL A 720 TRP A 728 1 9 HELIX 35 35 ALA A 738 PRO A 756 1 19 HELIX 36 36 LEU A 761 LEU A 769 1 9 HELIX 37 37 VAL A 781 LEU A 783 5 3 HELIX 38 38 GLU A 796 ALA A 814 1 19 SHEET 1 A 2 LEU A 171 ASP A 174 0 SHEET 2 A 2 SER A 403 ILE A 406 -1 N PHE A 405 O TYR A 172 SHEET 1 B 3 MET A 397 ALA A 400 0 SHEET 2 B 3 VAL A 177 CYS A 181 -1 N TYR A 180 O MET A 397 SHEET 3 B 3 THR A 186 LEU A 188 -1 N LEU A 188 O PRO A 179 SHEET 1 C 5 TYR A 248 VAL A 253 0 SHEET 2 C 5 GLU A 256 GLU A 261 -1 N LEU A 260 O ALA A 249 SHEET 3 C 5 ALA A 222 THR A 228 1 N SER A 223 O ALA A 257 SHEET 4 C 5 TYR A 197 PRO A 210 -1 N PHE A 209 O LEU A 224 SHEET 5 C 5 LEU A 376 PRO A 387 -1 N TYR A 386 O LYS A 198 SHEET 1 D 2 ALA A 240 VAL A 242 0 SHEET 2 D 2 VAL A 303 LEU A 305 1 N VAL A 304 O ALA A 240 SHEET 1 E 3 TRP A 459 CYS A 461 0 SHEET 2 E 3 THR A 507 ARG A 510 -1 N ARG A 509 O VAL A 460 SHEET 3 E 3 GLU A 499 ALA A 501 -1 N LEU A 500 O MET A 508 SHEET 1 F 2 ILE A 548 GLY A 551 0 SHEET 2 F 2 VAL A 578 HIS A 581 1 N ILE A 579 O ILE A 548 SSBOND 1 CYS A 181 CYS A 184 1555 1555 1.95 SSBOND 2 CYS A 181 CYS A 392 1555 1555 1.85 SSBOND 3 CYS A 184 CYS A 389 1555 1555 2.26 SSBOND 4 CYS A 389 CYS A 392 1555 1555 1.06 SSBOND 5 CYS A 461 CYS A 464 1555 1555 0.94 SSBOND 6 CYS A 502 CYS A 504 1555 1555 0.93 LINK SG CYS A 181 ZN ZN A1101 1555 1555 2.05 LINK SG CYS A 184 ZN ZN A1101 1555 1555 1.72 LINK SG CYS A 389 ZN ZN A1101 1555 1555 1.44 LINK SG CYS A 392 ZN ZN A1101 1555 1555 1.27 LINK SG CYS A 461 ZN ZN A1102 1555 1555 1.91 LINK SG CYS A 464 ZN ZN A1102 1555 1555 1.71 LINK SG CYS A 502 ZN ZN A1102 1555 1555 1.48 LINK CB CYS A 504 ZN ZN A1102 1555 1555 2.39 LINK SG CYS A 504 ZN ZN A1102 1555 1555 1.16 LINK ZN ZN A1101 O HOH A1327 1555 1555 2.36 LINK ZN ZN A1102 O HOH A1179 1555 1555 2.70 SITE 1 AC1 5 CYS A 181 CYS A 184 CYS A 389 CYS A 392 SITE 2 AC1 5 HOH A1327 SITE 1 AC2 5 CYS A 461 CYS A 464 CYS A 502 CYS A 504 SITE 2 AC2 5 HOH A1179 CRYST1 161.100 94.800 126.500 90.00 126.30 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006207 0.000000 0.004560 0.00000 SCALE2 0.000000 0.010549 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009809 0.00000