HEADER HYDROLASE 11-SEP-01 1IR6 TITLE CRYSTAL STRUCTURE OF EXONUCLEASE RECJ BOUND TO MANGANESE COMPND MOL_ID: 1; COMPND 2 MOLECULE: EXONUCLEASE RECJ; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC DOMAIN; COMPND 5 SYNONYM: SINGLE-STRANDED DNA SPECIFIC EXONUCLEASE RECJ; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 274; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET19B KEYWDS MANGANESE, DNA REPAIR, DNA RECOMBINATION, NUCLEASE, SINGLE-STRANDED KEYWDS 2 DNA, TWO DOMAINS INTERCONNECTED BY ALPHA-HELIX, RIKEN STRUCTURAL KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, STRUCTURAL GENOMICS, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.YAMAGATA,Y.KAKUTA,R.MASUI,K.FUKUYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 4 27-DEC-23 1IR6 1 REMARK LINK REVDAT 3 24-FEB-09 1IR6 1 VERSN REVDAT 2 14-JAN-03 1IR6 1 REMARK REVDAT 1 15-MAY-02 1IR6 0 JRNL AUTH A.YAMAGATA,Y.KAKUTA,R.MASUI,K.FUKUYAMA JRNL TITL THE CRYSTAL STRUCTURE OF EXONUCLEASE RECJ BOUND TO MN2+ ION JRNL TITL 2 SUGGESTS HOW ITS CHARACTERISTIC MOTIFS ARE INVOLVED IN JRNL TITL 3 EXONUCLEASE ACTIVITY. JRNL REF PROC.NATL.ACAD.SCI.USA V. 99 5908 2002 JRNL REFN ISSN 0027-8424 JRNL PMID 11972066 JRNL DOI 10.1073/PNAS.092547099 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.YAMAGATA,R.MASUI,Y.KAKUTA,S.KURAMITSU,K.FUKUYAMA REMARK 1 TITL OVEREXPRESSION, PURIFICATION AND CHARACTERIZATION OF RECJ REMARK 1 TITL 2 PROTEIN FROM THERMUS THERMOPHILUS HB8 AND ITS CORE DOMAIN REMARK 1 REF NUCLEIC ACIDS RES. V. 29 4617 2001 REMARK 1 REFN ISSN 0305-1048 REMARK 1 DOI 10.1093/NAR/29.22.4617 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.83 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 418520.340 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 20777 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1008 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.008 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.08 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.40 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3145 REMARK 3 BIN R VALUE (WORKING SET) : 0.3620 REMARK 3 BIN FREE R VALUE : 0.3900 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.50 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 147 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.032 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2919 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 62.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.40 REMARK 3 ESD FROM SIGMAA (A) : 0.53 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.45 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.54 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.500 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.80 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.980 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.33 REMARK 3 BSOL : 34.07 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : ION.TOP REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1IR6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-SEP-01. REMARK 100 THE DEPOSITION ID IS D_1000005205. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-MAR-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21198 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 57.808 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.08 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.27900 REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SINGLE-WAVELENGTH REMARK 200 ANOMALOUS DISPERSION REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 76.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, SODIUM/POTASSIUM REMARK 280 TARTRATE, SODIUM CITRATE, GLYCEROL, MANGANESE CHLORIDE, PH 5.8, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 70.80000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.80000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 70.80000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 70.80000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 70.80000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 70.80000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 70.80000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 70.80000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 70.80000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 70.80000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 70.80000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 70.80000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 70.80000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 70.80000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 70.80000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 70.80000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 70.80000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 70.80000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PHE A 40 REMARK 465 ARG A 41 REMARK 465 ARG A 42 REMARK 465 LYS A 43 REMARK 465 GLU A 44 REMARK 465 ASP A 45 REMARK 465 LEU A 46 REMARK 465 ASP A 47 REMARK 465 PRO A 48 REMARK 465 LEU A 434 REMARK 465 PRO A 435 REMARK 465 GLU A 436 REMARK 465 PRO A 437 REMARK 465 GLY A 438 REMARK 465 LEU A 439 REMARK 465 LEU A 440 REMARK 465 PRO A 441 REMARK 465 GLN A 442 REMARK 465 VAL A 443 REMARK 465 PHE A 444 REMARK 465 ARG A 445 REMARK 465 GLU A 446 REMARK 465 LEU A 447 REMARK 465 ALA A 448 REMARK 465 LEU A 449 REMARK 465 LEU A 450 REMARK 465 GLU A 451 REMARK 465 PRO A 452 REMARK 465 TYR A 453 REMARK 465 GLY A 454 REMARK 465 GLU A 455 REMARK 465 GLY A 456 REMARK 465 ASN A 457 REMARK 465 PRO A 458 REMARK 465 GLU A 459 REMARK 465 PRO A 460 REMARK 465 LEU A 461 REMARK 465 PHE A 462 REMARK 465 LEU A 463 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 52 78.64 -61.62 REMARK 500 PRO A 54 -98.26 -24.36 REMARK 500 LEU A 55 108.24 71.01 REMARK 500 LEU A 99 32.32 -89.42 REMARK 500 ASP A 102 79.64 -104.52 REMARK 500 ILE A 139 -8.47 -39.58 REMARK 500 ASN A 141 40.14 -96.42 REMARK 500 HIS A 142 -25.49 -37.73 REMARK 500 LEU A 149 -86.28 -78.86 REMARK 500 GLU A 150 -39.20 -14.99 REMARK 500 HIS A 160 6.92 -153.59 REMARK 500 PRO A 179 -89.06 -9.71 REMARK 500 ASP A 180 54.62 -103.81 REMARK 500 LYS A 182 51.34 -140.53 REMARK 500 GLU A 200 -72.61 -51.07 REMARK 500 LEU A 202 -21.41 79.13 REMARK 500 VAL A 222 55.22 38.31 REMARK 500 SER A 243 -165.97 -78.26 REMARK 500 GLU A 280 29.41 -140.08 REMARK 500 LEU A 289 -63.21 -106.17 REMARK 500 THR A 290 -55.14 -4.35 REMARK 500 ALA A 294 -77.54 -56.82 REMARK 500 ALA A 325 -94.28 -57.13 REMARK 500 ASP A 326 98.61 84.70 REMARK 500 GLU A 338 77.24 -118.35 REMARK 500 GLN A 364 -138.70 64.90 REMARK 500 LEU A 372 -166.23 -163.54 REMARK 500 ALA A 373 -124.46 35.49 REMARK 500 ALA A 384 -9.66 66.04 REMARK 500 TYR A 391 143.67 171.42 REMARK 500 HIS A 394 -158.84 -137.65 REMARK 500 PHE A 400 -175.72 -172.68 REMARK 500 PHE A 421 150.12 74.13 REMARK 500 PRO A 422 -168.02 -66.95 REMARK 500 GLU A 427 -60.92 -175.42 REMARK 500 LEU A 430 -15.59 60.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A1434 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 84 OD2 REMARK 620 2 ASP A 136 OD1 80.8 REMARK 620 3 ASP A 136 OD2 91.6 49.5 REMARK 620 4 HIS A 160 NE2 95.4 85.4 132.4 REMARK 620 5 ASP A 221 OD2 63.7 140.9 112.6 112.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 1434 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: TTK003000716.1 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THERE ARE 2 DIFFERENCES BETWEEN THE DEPOSITORS REMARK 999 DATA AND THE GENETIC SEQUENCE(S) IN THE 14595119 REMARK 999 ENTRY. THERE IS NO QUESTION FROM THE ELECTRON REMARK 999 DENSITY THAT THESE RESIDUES ARE NOT DATABASE REMARK 999 SEQUENCE. DBREF 1IR6 A 40 463 UNP Q93R48 Q93R48_THETH 40 463 SEQADV 1IR6 PRO A 168 UNP Q93R48 SER 168 SEE REMARK 999 SEQADV 1IR6 ALA A 191 UNP Q93R48 VAL 191 SEE REMARK 999 SEQRES 1 A 424 PHE ARG ARG LYS GLU ASP LEU ASP PRO PRO LEU ALA LEU SEQRES 2 A 424 LEU PRO LEU LYS GLY LEU ARG GLU ALA ALA ALA LEU LEU SEQRES 3 A 424 GLU GLU ALA LEU ARG GLN GLY LYS ARG ILE ARG VAL HIS SEQRES 4 A 424 GLY ASP TYR ASP ALA ASP GLY LEU THR GLY THR ALA ILE SEQRES 5 A 424 LEU VAL ARG GLY LEU ALA ALA LEU GLY ALA ASP VAL HIS SEQRES 6 A 424 PRO PHE ILE PRO HIS ARG LEU GLU GLU GLY TYR GLY VAL SEQRES 7 A 424 LEU MET GLU ARG VAL PRO GLU HIS LEU GLU ALA SER ASP SEQRES 8 A 424 LEU PHE LEU THR VAL ASP CYS GLY ILE THR ASN HIS ALA SEQRES 9 A 424 GLU LEU ARG GLU LEU LEU GLU ASN GLY VAL GLU VAL ILE SEQRES 10 A 424 VAL THR ASP HIS HIS THR PRO GLY LYS THR PRO PRO PRO SEQRES 11 A 424 GLY LEU VAL VAL HIS PRO ALA LEU THR PRO ASP LEU LYS SEQRES 12 A 424 GLU LYS PRO THR GLY ALA GLY VAL ALA PHE LEU LEU LEU SEQRES 13 A 424 TRP ALA LEU HIS GLU ARG LEU GLY LEU PRO PRO PRO LEU SEQRES 14 A 424 GLU TYR ALA ASP LEU ALA ALA VAL GLY THR ILE ALA ASP SEQRES 15 A 424 VAL ALA PRO LEU TRP GLY TRP ASN ARG ALA LEU VAL LYS SEQRES 16 A 424 GLU GLY LEU ALA ARG ILE PRO ALA SER SER TRP VAL GLY SEQRES 17 A 424 LEU ARG LEU LEU ALA GLU ALA VAL GLY TYR THR GLY LYS SEQRES 18 A 424 ALA VAL GLU VAL ALA PHE ARG ILE ALA PRO ARG ILE ASN SEQRES 19 A 424 ALA ALA SER ARG LEU GLY GLU ALA GLU LYS ALA LEU ARG SEQRES 20 A 424 LEU LEU LEU THR ASP ASP ALA ALA GLU ALA GLN ALA LEU SEQRES 21 A 424 VAL GLY GLU LEU HIS ARG LEU ASN ALA ARG ARG GLN THR SEQRES 22 A 424 LEU GLU GLU ALA MET LEU ARG LYS LEU LEU PRO GLN ALA SEQRES 23 A 424 ASP PRO GLU ALA LYS ALA ILE VAL LEU LEU ASP PRO GLU SEQRES 24 A 424 GLY HIS PRO GLY VAL MET GLY ILE VAL ALA SER ARG ILE SEQRES 25 A 424 LEU GLU ALA THR LEU ARG PRO VAL PHE LEU VAL ALA GLN SEQRES 26 A 424 GLY LYS GLY THR VAL ARG SER LEU ALA PRO ILE SER ALA SEQRES 27 A 424 VAL GLU ALA LEU ARG SER ALA GLU ASP LEU LEU LEU ARG SEQRES 28 A 424 TYR GLY GLY HIS LYS GLU ALA ALA GLY PHE ALA MET ASP SEQRES 29 A 424 GLU ALA LEU PHE PRO ALA PHE LYS ALA ARG VAL GLU ALA SEQRES 30 A 424 TYR ALA ALA ARG PHE PRO ASP PRO VAL ARG GLU VAL ALA SEQRES 31 A 424 LEU LEU ASP LEU LEU PRO GLU PRO GLY LEU LEU PRO GLN SEQRES 32 A 424 VAL PHE ARG GLU LEU ALA LEU LEU GLU PRO TYR GLY GLU SEQRES 33 A 424 GLY ASN PRO GLU PRO LEU PHE LEU HET MN A1434 1 HETNAM MN MANGANESE (II) ION FORMUL 2 MN MN 2+ HELIX 1 1 GLY A 57 GLN A 71 1 15 HELIX 2 2 ASP A 82 LEU A 99 1 18 HELIX 3 3 LEU A 118 GLU A 120 5 3 HELIX 4 4 ARG A 121 GLU A 127 1 7 HELIX 5 5 ASN A 141 ALA A 143 5 3 HELIX 6 6 GLU A 144 LEU A 149 1 6 HELIX 7 7 HIS A 174 THR A 178 5 5 HELIX 8 8 THR A 186 ARG A 201 1 16 HELIX 9 9 PRO A 207 GLU A 209 5 3 HELIX 10 10 TYR A 210 ASP A 221 1 12 HELIX 11 11 GLY A 227 ILE A 240 1 14 HELIX 12 12 TRP A 245 VAL A 255 1 11 HELIX 13 13 ALA A 261 ARG A 267 1 7 HELIX 14 14 ARG A 267 LEU A 278 1 12 HELIX 15 15 GLU A 280 THR A 290 1 11 HELIX 16 16 ASP A 292 LEU A 322 1 31 HELIX 17 17 PRO A 323 ALA A 325 5 3 HELIX 18 18 HIS A 340 LEU A 356 1 17 HELIX 19 19 SER A 376 SER A 383 1 8 HELIX 20 20 ALA A 384 LEU A 388 5 5 HELIX 21 21 ASP A 403 ALA A 405 5 3 HELIX 22 22 LEU A 406 ARG A 420 1 15 SHEET 1 A 5 ASP A 102 PHE A 106 0 SHEET 2 A 5 ARG A 74 HIS A 78 1 N ILE A 75 O ASP A 102 SHEET 3 A 5 LEU A 131 THR A 134 1 O LEU A 133 N ARG A 76 SHEET 4 A 5 GLU A 154 THR A 158 1 O GLU A 154 N PHE A 132 SHEET 5 A 5 LEU A 171 VAL A 173 1 O VAL A 173 N VAL A 157 SHEET 1 B 5 ILE A 332 LEU A 335 0 SHEET 2 B 5 VAL A 359 ALA A 363 1 O PHE A 360 N ILE A 332 SHEET 3 B 5 LYS A 366 ARG A 370 -1 O ARG A 370 N VAL A 359 SHEET 4 B 5 ALA A 397 ALA A 401 -1 O PHE A 400 N GLY A 367 SHEET 5 B 5 ARG A 390 GLY A 393 -1 N GLY A 392 O GLY A 399 LINK OD2 ASP A 84 MN MN A1434 1555 1555 2.39 LINK OD1 ASP A 136 MN MN A1434 1555 1555 2.63 LINK OD2 ASP A 136 MN MN A1434 1555 1555 2.64 LINK NE2 HIS A 160 MN MN A1434 1555 1555 2.24 LINK OD2 ASP A 221 MN MN A1434 1555 1555 2.50 SITE 1 AC1 5 ASP A 84 ASP A 136 HIS A 160 HIS A 161 SITE 2 AC1 5 ASP A 221 CRYST1 141.600 141.600 141.600 90.00 90.00 90.00 P 21 3 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007062 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007062 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007062 0.00000